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David Snelling c488fa82cc feat: add entity versioning system with critical bug fixes (v5.3.0) 
Entity Versioning (NEW):
- Add complete entity versioning API (brain.versions.*) with 18 methods
- Content-addressable storage with SHA-256 deduplication
- Git-style version control: save, restore, compare, undo, prune
- Auto-versioning augmentation with pattern-based filtering
- Branch-isolated version histories
- Complete integration tests and API documentation

Critical Bug Fixes:
- Fix commit() not updating branch refs (brainy.ts:2385)
  - Root cause: Passed "heads/main" which normalized to "refs/heads/heads/main"
  - Impact: All Git-style versioning features were broken
  - Fix: Pass branch name directly for correct normalization
- Fix VFS entities missing isVFSEntity flag
  - Add isVFSEntity: true to all VFS files/folders for filtering
  - Resolves pollution of semantic search with filesystem entities
  - Updated in writeFile(), mkdir(), and root directory init

Implementation:
- src/versioning/VersionManager.ts - Core versioning engine
- src/versioning/VersionStorage.ts - Content-addressable storage
- src/versioning/VersionIndex.ts - Metadata indexing
- src/versioning/VersionDiff.ts - Version comparison
- src/versioning/VersioningAPI.ts - Public API interface
- src/augmentations/versioningAugmentation.ts - Auto-versioning
- tests/integration/versioning.test.ts - Full integration tests
- tests/unit/versioning/ - Unit test suite

Documentation:
- Complete Entity Versioning API section in docs/api/README.md
- VFS entity filtering guide with examples
- Updated "What's New" section for v5.3.0
- Strategy docs for both critical bugs

Test Results:
- 1168 tests passing
- Build: PASSING (no TypeScript errors)
- Integration tests: ALL PASSING

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-04 11:19:02 -08:00
..
all-apis-comprehensive.test.ts fix: update tests for v5.1.0 API changes (VFS auto-init + property access) 2025-11-02 11:38:12 -08:00
api-parameter-validation.test.ts fix: resolve 10 test failures across clustering, metadata, and deletion 2025-10-09 16:33:08 -07:00
azure-storage.test.ts chore(release): 4.0.0 2025-10-17 14:48:34 -07:00
brainy-complete.integration.test.ts fix: resolve 10 test failures across clustering, metadata, and deletion 2025-10-09 16:33:08 -07:00
brainy-core.integration.test.ts feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
brainy-phase1c-integration.test.ts test: complete Phase 1c integration tests for type-aware API 2025-10-15 14:26:17 -07:00
commit-ref-bug.test.ts feat: add entity versioning system with critical bug fixes (v5.3.0) 2025-11-04 11:19:02 -08:00
count-synchronization.test.ts fix(storage): resolve count synchronization race condition across all storage adapters 2025-10-21 11:19:08 -07:00
cow-full-integration.test.ts feat: implement complete v5.0.0 Git-style fork/merge/commit workflow 2025-11-01 11:56:11 -07:00
entity-confidence-weight.test.ts fix: update tests for v5.1.0 API changes (VFS auto-init + property access) 2025-11-02 11:38:12 -08:00
find-unified-integration.test.ts fix: resolve 10 test failures across clustering, metadata, and deletion 2025-10-09 16:33:08 -07:00
gcs-native-storage.test.ts feat: simplify GCS storage naming and add Cloud Run deployment options 2025-10-20 11:12:32 -07:00
gcs-persistence-fix.test.ts fix: implement unified UUID-based sharding for metadata across all storage adapters 2025-10-08 13:26:35 -07:00
get-relations-fix.test.ts fix: resolve getRelations() empty array bug and add string ID shorthand 2025-10-21 13:10:34 -07:00
hnsw-rebuild.test.ts fix: correct test assertions for addMany return value and use valid VerbType 2025-10-10 14:23:24 -07:00
image-import.test.ts feat: add ImageHandler with EXIF extraction and comprehensive MIME detection (v5.2.0) 2025-11-03 14:06:17 -08:00
metadata-vector-exclusion.test.ts fix: v3.50.2 emergency hotfix - exclude numeric field names from metadata indexing 2025-10-16 16:31:06 -07:00
phase3TypeFirstQuery.integration.test.ts feat: Phase 3 - Unified Semantic Type Inference (Nouns + Verbs) 2025-10-16 10:59:26 -07:00
relationship-intelligence.test.ts fix: createEntities defaults to true, enable AI features by default 2025-10-23 16:54:40 -07:00
remaining-apis.test.ts fix: update tests for v5.1.0 API changes (VFS auto-init + property access) 2025-11-02 11:38:12 -08:00
s3-storage.test.ts feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
smart-import.test.ts feat: implement progressive flush intervals for streaming imports 2025-10-22 17:36:27 -07:00
typeAwareHNSW.integration.test.ts feat: Phase 2 Type-Aware HNSW - 87% memory reduction @ billion scale 2025-10-15 15:39:28 -07:00
typeInference.hybrid.integration.test.ts feat: Phase 3 - Unified Semantic Type Inference (Nouns + Verbs) 2025-10-16 10:59:26 -07:00
typeInference.integration.test.ts feat: Phase 3 - Unified Semantic Type Inference (Nouns + Verbs) 2025-10-16 10:59:26 -07:00
versioning.test.ts feat: add entity versioning system with critical bug fixes (v5.3.0) 2025-11-04 11:19:02 -08:00
vfs-and-graph-entities.test.ts fix: update tests for v5.1.0 API changes (VFS auto-init + property access) 2025-11-02 11:38:12 -08:00
vfs-api-wiring.test.ts fix: update tests for v5.1.0 API changes (VFS auto-init + property access) 2025-11-02 11:38:12 -08:00
vfs-debug.test.ts fix: update tests for v5.1.0 API changes (VFS auto-init + property access) 2025-11-02 11:38:12 -08:00
vfs-import-verification.test.ts fix: update tests for v5.1.0 API changes (VFS auto-init + property access) 2025-11-02 11:38:12 -08:00
vfs-knowledge-separation.test.ts fix: update tests for v5.1.0 API changes (VFS auto-init + property access) 2025-11-02 11:38:12 -08:00