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David Snelling c488fa82cc feat: add entity versioning system with critical bug fixes (v5.3.0) 
Entity Versioning (NEW):
- Add complete entity versioning API (brain.versions.*) with 18 methods
- Content-addressable storage with SHA-256 deduplication
- Git-style version control: save, restore, compare, undo, prune
- Auto-versioning augmentation with pattern-based filtering
- Branch-isolated version histories
- Complete integration tests and API documentation

Critical Bug Fixes:
- Fix commit() not updating branch refs (brainy.ts:2385)
  - Root cause: Passed "heads/main" which normalized to "refs/heads/heads/main"
  - Impact: All Git-style versioning features were broken
  - Fix: Pass branch name directly for correct normalization
- Fix VFS entities missing isVFSEntity flag
  - Add isVFSEntity: true to all VFS files/folders for filtering
  - Resolves pollution of semantic search with filesystem entities
  - Updated in writeFile(), mkdir(), and root directory init

Implementation:
- src/versioning/VersionManager.ts - Core versioning engine
- src/versioning/VersionStorage.ts - Content-addressable storage
- src/versioning/VersionIndex.ts - Metadata indexing
- src/versioning/VersionDiff.ts - Version comparison
- src/versioning/VersioningAPI.ts - Public API interface
- src/augmentations/versioningAugmentation.ts - Auto-versioning
- tests/integration/versioning.test.ts - Full integration tests
- tests/unit/versioning/ - Unit test suite

Documentation:
- Complete Entity Versioning API section in docs/api/README.md
- VFS entity filtering guide with examples
- Updated "What's New" section for v5.3.0
- Strategy docs for both critical bugs

Test Results:
- 1168 tests passing
- Build: PASSING (no TypeScript errors)
- Integration tests: ALL PASSING

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-04 11:19:02 -08:00
..
api feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
augmentations/intelligentImport feat: add intelligent import for CSV, Excel, and PDF files 2025-10-01 16:51:03 -07:00
benchmarks feat: remove legacy ImportManager, standardize getStats() API 2025-10-09 11:40:31 -07:00
comprehensive fix: resolve 10 test failures across clustering, metadata, and deletion 2025-10-09 16:33:08 -07:00
configs 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
fixtures/import feat: add intelligent import for CSV, Excel, and PDF files 2025-10-01 16:51:03 -07:00
helpers feat: Brainy 3.0 - Triple Intelligence Release 2025-09-15 11:06:16 -07:00
integration feat: add entity versioning system with critical bug fixes (v5.3.0) 2025-11-04 11:19:02 -08:00
manual fix: update tests for v5.1.0 API changes (VFS auto-init + property access) 2025-11-02 11:38:12 -08:00
performance docs: remove exaggerated performance claims and add honest benchmarks 2025-10-28 09:54:01 -07:00
scripts feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
unit feat: add entity versioning system with critical bug fixes (v5.3.0) 2025-11-04 11:19:02 -08:00
vfs fix: update VFS test for v5.2.0 BlobStorage architecture 2025-11-03 14:08:58 -08:00
brainy-3.test.ts fix: resolve 10 test failures across clustering, metadata, and deletion 2025-10-09 16:33:08 -07:00
critical-error-handling.test.ts feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
critical-neural-validation.test.ts feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
critical-performance-benchmark.test.ts feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
distributed-demo.test.ts feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
model-loading.test.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
opfs-storage.test.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
package-size-breakdown.test.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
package-size-limit.test.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
setup-integration.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
setup-unit.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
setup.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
streaming-pipeline.test.ts feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
type-utils.test.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
typeAwareHNSWIndex.test.ts feat: Phase 2 Type-Aware HNSW - 87% memory reduction @ billion scale 2025-10-15 15:39:28 -07:00
typeAwareQueryPlanner.test.ts feat: Phase 3 - Unified Semantic Type Inference (Nouns + Verbs) 2025-10-16 10:59:26 -07:00