brainy/docs/api/README.md
David Snelling 0ddc05a5bb feat: enforce data/metadata separation, numeric range queries, improved docs
- Store data opaquely in add() and update() instead of spreading object
  properties into top-level metadata. data is for semantic search (HNSW),
  metadata is for structured where-filter queries (MetadataIndex).
- Fix numeric range queries in MetadataIndex — use numeric-aware comparison
  instead of lexicographic string comparison for normalized values.
- Add data field to RelateParams and Relation types for relationship content.
- Add where.type → where.noun alias in metadata-only find() path.
- Rewrite README: focused ~350 lines from 791, quick start first, feature
  showcase with mini-snippets, organized doc links, no version callouts.
- Add DATA_MODEL.md and QUERY_OPERATORS.md reference docs.
- Remove 10 outdated/redundant doc files consolidated into API reference.
- Improve JSDoc on Entity, Relation, AddParams, FindParams, and core methods.
- Fix tests asserting data properties appear in metadata (data model violation).
- Deprecate verb.source/target in favor of from/to (public) and sourceId/targetId (storage).
2026-02-09 12:07:54 -08:00

2201 lines
55 KiB
Markdown

# 🧠 Brainy API Reference
> **Complete API documentation for Brainy**
> Zero Configuration • Triple Intelligence • Git-Style Branching • Entity Versioning • Candle WASM Embeddings
**Updated:** 2026-01-06
**All APIs verified against actual code**
---
## Quick Start
```typescript
import { Brainy, NounType, VerbType } from '@soulcraft/brainy'
const brain = new Brainy() // Zero config!
await brain.init() // VFS auto-initialized!
// Add data (text auto-embeds!)
const id = await brain.add({
data: 'The future of AI is here',
type: NounType.Concept,
metadata: { category: 'technology' }
})
// Search with Triple Intelligence
const results = await brain.find({
query: 'artificial intelligence',
where: { year: { greaterThan: 2020 } },
connected: { from: id, depth: 2 }
})
// Fork for safe experimentation
const experiment = await brain.fork('test-feature')
await experiment.add({ data: 'test', type: NounType.Document })
await experiment.commit({ message: 'Add test data' })
// Entity versioning
await brain.versions.save(id, { tag: 'v1.0', description: 'Initial version' })
await brain.update(id, { category: 'AI' })
await brain.versions.save(id, { tag: 'v2.0' })
```
---
## Core Concepts
### 🧬 Entities (Nouns)
Semantic vectors with metadata and relationships - the fundamental data unit in Brainy.
### 🔗 Relationships (Verbs)
Typed connections between entities with optional `data` and `metadata` - building knowledge graphs.
### 📊 Data vs Metadata
- **`data`**: Content embedded into vectors. Searchable via **semantic similarity** (HNSW) and **hybrid text+semantic** search. NOT queryable via `where` filters.
- **`metadata`**: Structured fields indexed by MetadataIndex. Queryable via `where` filters in `find()`.
See **[Data Model](../DATA_MODEL.md)** for the full explanation.
### 🧠 Triple Intelligence
Vector search + Graph traversal + Metadata filtering in one unified query.
### 🌳 Git-Style Branching
Fork, experiment, and commit - Snowflake-style copy-on-write isolation.
### 📜 Entity Versioning
Time-travel and history tracking for individual entities - Git-like version control with content-addressable storage.
---
## Table of Contents
- [Core CRUD Operations](#core-crud-operations)
- [Search & Query](#search--query)
- [Relationships](#relationships)
- [Batch Operations](#batch-operations)
- [Branch Management](#branch-management)
- [Entity Versioning](#entity-versioning)
- [Virtual Filesystem (VFS)](#virtual-filesystem-vfs)
- [Neural API](#neural-api)
- [Import & Export](#import--export)
- [Configuration](#configuration)
- [Storage Adapters](#storage-adapters)
- [Utility Methods](#utility-methods)
- [Embedding & Analysis APIs](#embedding--analysis-apis)
- [Type System Reference](#type-system-reference)
---
## Core CRUD Operations
### `add(params)` → `Promise<string>`
Add a single entity to the database.
```typescript
const id = await brain.add({
data: 'JavaScript is a programming language', // Text or pre-computed vector
type: NounType.Concept, // Required: Entity type
metadata: { // Optional metadata
category: 'programming',
year: 1995
}
})
```
**Parameters:**
- `data`: `string | number[]` - Content to embed (text auto-embeds) or pre-computed vector
- `type`: `NounType` - Entity type (required)
- `metadata?`: `object` - Structured queryable fields (indexed by MetadataIndex, used in `where` filters)
- `id?`: `string` - Custom ID (auto-generated UUID if not provided)
- `vector?`: `number[]` - Pre-computed vector (skips auto-embedding)
- `confidence?`: `number` - Type classification confidence (0-1)
- `weight?`: `number` - Entity importance/salience (0-1)
> **`data`** is embedded into vectors for semantic search. **`metadata`** is indexed for `where` filters. See [Data Model](../DATA_MODEL.md).
**Returns:** `Promise<string>` - Entity ID
---
### `get(id)` → `Promise<Entity | null>`
Retrieve a single entity by ID.
```typescript
const entity = await brain.get(id)
console.log(entity?.data) // Original data
console.log(entity?.metadata) // Metadata
console.log(entity?.vector) // Embedding vector
```
**Parameters:**
- `id`: `string` - Entity ID
**Returns:** `Promise<Entity | null>` - Entity or null if not found
---
### `update(params)` → `Promise<void>`
Update an existing entity.
```typescript
await brain.update({
id: entityId,
data: 'Updated content', // Optional: new data
metadata: { updated: true } // Optional: new metadata (merges)
})
```
**Parameters:**
- `id`: `string` - Entity ID
- `data?`: `string | number[]` - New data/vector
- `metadata?`: `object` - Metadata to merge
**Returns:** `Promise<void>`
---
### `delete(id)` → `Promise<void>`
Delete a single entity.
```typescript
await brain.delete(id)
```
**Parameters:**
- `id`: `string` - Entity ID
**Returns:** `Promise<void>`
---
## Search & Query
### `find(query)` → `Promise<Result[]>`
**Triple Intelligence** - Vector + Graph + Metadata in ONE query.
```typescript
// Simple text search
const results = await brain.find('machine learning')
// Advanced Triple Intelligence query
const results = await brain.find({
query: 'artificial intelligence', // Vector similarity
where: { // Metadata filtering
year: { greaterThan: 2020 },
category: { oneOf: ['AI', 'ML'] }
},
connected: { // Graph traversal
to: conceptId,
depth: 2,
type: VerbType.RelatedTo
},
limit: 10
})
```
**Parameters:**
- `query`: `string | FindParams`
- **Simple:** Just text for vector search
- **Advanced:** Object with vector + graph + metadata filters
**FindParams:**
- `query?`: `string` - Text for semantic + hybrid search (searches `data` via HNSW + text index)
- `type?`: `NounType | NounType[]` - Filter by entity type(s). Alias for `where.noun`.
- `where?`: `object` - Metadata filters. See **[Query Operators](../QUERY_OPERATORS.md)** for all operators.
- `connected?`: `object` - Graph traversal options
- `to?`: `string` - Target entity ID
- `from?`: `string` - Source entity ID
- `via?`: `VerbType | VerbType[]` - Relationship type(s) to traverse
- `type?`: `VerbType | VerbType[]` - Alias for `via`
- `depth?`: `number` - Traversal depth (default: 1)
- `direction?`: `'in' | 'out' | 'both'` - Traversal direction (default: 'both')
- `limit?`: `number` - Max results (default: 10)
- `offset?`: `number` - Skip results
- `orderBy?`: `string` - Field to sort by (e.g., 'createdAt', 'metadata.priority')
- `order?`: `'asc' | 'desc'` - Sort direction (default: 'asc')
- `searchMode?`: `'auto' | 'text' | 'semantic' | 'hybrid'` - Search strategy:
- `'auto'` (default): Zero-config hybrid combining text + semantic search
- `'text'`: Pure keyword/text matching
- `'semantic'`/`'vector'`: Pure vector similarity
- `'hybrid'`: Explicit hybrid mode
- `hybridAlpha?`: `number` - Balance between text (0.0) and semantic (1.0) search. Auto-detected by query length if not specified.
- `excludeVFS?`: `boolean` - Exclude VFS entities from results (default: false)
**Returns:** `Promise<Result[]>` - Matching entities with scores
---
### Hybrid Search
Brainy automatically combines text (keyword) and semantic (vector) search for optimal results. No configuration needed.
```typescript
// Zero-config hybrid search (just works)
const results = await brain.find({
query: 'David Smith' // Finds both exact text matches AND semantically similar
})
// Force text-only search (exact keyword matching)
const textResults = await brain.find({
query: 'exact keyword',
searchMode: 'text'
})
// Force semantic-only search (vector similarity)
const semanticResults = await brain.find({
query: 'artificial intelligence concepts',
searchMode: 'semantic'
})
// Custom hybrid weighting (0 = text only, 1 = semantic only)
const customResults = await brain.find({
query: 'David Smith',
hybridAlpha: 0.3 // Favor text matching
})
```
**How it works:**
- Short queries (1-2 words) automatically favor text matching
- Long queries (5+ words) automatically favor semantic search
- Results are combined using Reciprocal Rank Fusion (RRF)
---
### Match Visibility
Search results include detailed match information:
```typescript
const results = await brain.find({ query: 'david the warrior' })
// Each result now includes:
results[0].textMatches // ["david", "warrior"] - exact query words found
results[0].textScore // 0.25 - text match quality (0-1)
results[0].semanticScore // 0.87 - semantic similarity (0-1)
results[0].matchSource // 'both' | 'text' | 'semantic'
```
**Use cases:**
- Highlight exact matches in UI (textMatches)
- Explain why a result ranked high (matchSource)
- Debug search behavior (separate scores)
---
### `highlight(params)` → `Promise<Highlight[]>` ✨
Zero-config highlighting for both exact matches AND semantic concepts.
Handles plain text, rich-text JSON (TipTap, Slate, Lexical, Draft.js, Quill), HTML, and Markdown automatically.
```typescript
// Plain text (works as before)
const highlights = await brain.highlight({
query: "david the warrior",
text: "David Smith is a brave fighter who battles dragons"
})
// [
// { text: "David", score: 1.0, position: [0, 5], matchType: 'text' },
// { text: "fighter", score: 0.78, position: [25, 32], matchType: 'semantic' },
// { text: "battles", score: 0.72, position: [37, 44], matchType: 'semantic' }
// ]
// Rich-text JSON (auto-detected)
const highlights = await brain.highlight({
query: "david the warrior",
text: JSON.stringify(tiptapDocument) // TipTap, Slate, Lexical, Draft.js, Quill
})
// Extracts text from nodes, annotates with contentCategory:
// [
// { text: "David", score: 1.0, matchType: 'text', contentCategory: 'title' },
// { text: "fighter", score: 0.78, matchType: 'semantic', contentCategory: 'content' }
// ]
// HTML input (auto-detected)
const highlights = await brain.highlight({
query: "warrior",
text: "<h1>David the Warrior</h1><p>A brave fighter.</p>"
})
// Custom extractor for proprietary formats
const highlights = await brain.highlight({
query: "function",
text: sourceCode,
contentExtractor: (text) => treeSitterParse(text) // Your custom parser
})
```
**Parameters:**
- `query`: `string` - The search query
- `text`: `string` - Text to highlight (plain text, JSON, HTML, or Markdown)
- `granularity?`: `'word' | 'phrase' | 'sentence'` - Highlight unit (default: 'word')
- `threshold?`: `number` - Min similarity for semantic matches (default: 0.5)
- `contentType?`: `ContentType` - Optional hint: `'plaintext' | 'richtext-json' | 'html' | 'markdown'`. Skips auto-detection when provided.
- `contentExtractor?`: `(text: string) => ExtractedSegment[]` - Custom parser. Bypasses built-in detection entirely.
**Returns:** `Promise<Highlight[]>`
- `text` - The matched text
- `score` - Match score (1.0 for text matches, varies for semantic)
- `position` - [start, end] indices in extracted text
- `matchType` - `'text'` (exact) or `'semantic'` (concept)
- `contentCategory?` - `'title' | 'annotation' | 'content' | 'value' | 'code' | 'structural'` — Role of the source text. Built-in extractors produce `'title'`, `'content'`, `'code'`. All 6 categories are available for custom parsers.
**Supported Rich-Text Formats:**
| Format | Detection | Text nodes |
|--------|-----------|------------|
| TipTap / ProseMirror | `{ type: 'doc', content: [...] }` | `{ type: 'text', text }` |
| Slate.js | `[{ type, children }]` | `{ text }` |
| Lexical | `{ root: { children } }` | `{ type: 'text', text }` |
| Draft.js | `{ blocks: [{ text }] }` | `{ text }` in block |
| Quill Delta | `{ ops: [{ insert }] }` | `{ insert }` |
| HTML | Tags like `<h1>`, `<p>`, `<code>` | Visible text content |
| Markdown | `#` headings, ` ``` ` code blocks | Stripped markup |
**Timeout Protection:**
Semantic matching has a 10-second timeout. If embedding takes too long (e.g., WASM stall), `highlight()` returns text-only matches instead of hanging.
**UI Pattern:**
```typescript
// Style differently based on match type and content category
highlights.forEach(h => {
const style = h.matchType === 'text' ? 'font-weight: bold' : 'background: yellow'
if (h.contentCategory === 'title') { /* render as heading highlight */ }
if (h.contentCategory === 'code') { /* render with code styling */ }
if (h.contentCategory === 'annotation') { /* render as comment/caption */ }
// Apply style from h.position[0] to h.position[1]
})
```
---
### Query Operators
Brainy uses clean, readable operators (BFO — Brainy Field Operators):
| Operator | Description | Example |
|----------|-------------|---------|
| `equals` / `eq` | Exact match | `{age: {equals: 25}}` |
| `notEquals` / `ne` | Not equal | `{status: {notEquals: 'deleted'}}` |
| `greaterThan` / `gt` | Greater than | `{age: {greaterThan: 18}}` |
| `greaterEqual` / `gte` | Greater or equal | `{score: {greaterEqual: 90}}` |
| `lessThan` / `lt` | Less than | `{price: {lessThan: 100}}` |
| `lessEqual` / `lte` | Less or equal | `{rating: {lessEqual: 3}}` |
| `between` | Inclusive range | `{year: {between: [2020, 2025]}}` |
| `oneOf` / `in` | In array | `{color: {oneOf: ['red', 'blue']}}` |
| `noneOf` | Not in array | `{status: {noneOf: ['deleted']}}` |
| `contains` | Array contains value | `{tags: {contains: 'ai'}}` |
| `exists` / `missing` | Field existence | `{email: {exists: true}}` |
| `startsWith` | String prefix | `{name: {startsWith: 'John'}}` |
| `endsWith` | String suffix | `{email: {endsWith: '@gmail.com'}}` |
| `matches` | Pattern match | `{text: {matches: /^[A-Z]/}}` |
| `allOf` | AND combinator | `{allOf: [{active: true}, {role: 'admin'}]}` |
| `anyOf` | OR combinator | `{anyOf: [{role: 'admin'}, {role: 'owner'}]}` |
**[Complete Operator Reference →](../QUERY_OPERATORS.md)** — all operators, aliases, indexed vs in-memory support matrix, and practical examples.
---
## Relationships
### `relate(params)` → `Promise<string>`
Create a typed relationship between entities.
```typescript
const relId = await brain.relate({
from: sourceId,
to: targetId,
type: VerbType.RelatedTo,
data: 'Collaborated on the research paper', // Optional: content for this edge
metadata: { // Optional: structured edge fields
strength: 0.9,
role: 'primary author'
}
})
```
**Parameters:**
- `from`: `string` - Source entity ID (must exist)
- `to`: `string` - Target entity ID (must exist)
- `type`: `VerbType` - Relationship type
- `data?`: `any` - Content for the relationship (overrides auto-computed vector)
- `metadata?`: `object` - Structured edge fields
- `weight?`: `number` - Connection strength (0-1, default: 1.0)
- `bidirectional?`: `boolean` - Create reverse edge too (default: false)
- `confidence?`: `number` - Relationship certainty (0-1)
**Returns:** `Promise<string>` - Relationship ID
---
### `getRelations(params)` → `Promise<Relation[]>`
Get relationships for an entity.
```typescript
// Get all relationships FROM an entity
const outgoing = await brain.getRelations({ from: entityId })
// Get all relationships TO an entity
const incoming = await brain.getRelations({ to: entityId })
// Filter by type
const related = await brain.getRelations({
from: entityId,
type: VerbType.Contains
})
```
**Parameters:**
- `from?`: `string` - Source entity ID
- `to?`: `string` - Target entity ID
- `type?`: `VerbType` - Filter by relationship type
**Returns:** `Promise<Relation[]>` - Matching relationships
---
## Batch Operations
### `addMany(params)` → `Promise<BatchResult<string>>`
Add multiple entities in one operation.
```typescript
const result = await brain.addMany({
items: [
{ data: 'Entity 1', type: NounType.Document },
{ data: 'Entity 2', type: NounType.Concept }
]
})
console.log(result.successful) // Array of IDs
console.log(result.failed) // Array of errors
```
**Returns:** `Promise<BatchResult<string>>` - Success/failure results
---
### `deleteMany(params)` → `Promise<BatchResult<string>>`
Delete multiple entities.
```typescript
const result = await brain.deleteMany({
ids: [id1, id2, id3]
})
```
---
### `updateMany(params)` → `Promise<BatchResult<string>>`
Update multiple entities.
```typescript
const result = await brain.updateMany({
updates: [
{ id: id1, metadata: { updated: true } },
{ id: id2, data: 'New content' }
]
})
```
---
### `relateMany(params)` → `Promise<string[]>`
Create multiple relationships.
```typescript
const ids = await brain.relateMany({
relations: [
{ from: id1, to: id2, type: VerbType.RelatedTo },
{ from: id1, to: id3, type: VerbType.Contains }
]
})
```
---
## Branch Management
Git-style branching with Snowflake-style copy-on-write.
### `fork(branch?, options?)` → `Promise<Brainy>`
Create an instant fork (<100ms) with full isolation.
```typescript
// Create a fork
const experiment = await brain.fork('test-feature')
// Make changes safely in isolation
await experiment.add({ data: 'Test entity', type: NounType.Document })
await experiment.update({ id: someId, metadata: { modified: true } })
// Parent is unaffected!
const parentData = await brain.find({}) // Original data unchanged
```
**Parameters:**
- `branch?`: `string` - Branch name (auto-generated if omitted)
- `options?`: `object`
- `description?`: `string` - Branch description
**Returns:** `Promise<Brainy>` - New Brainy instance on forked branch
**How it works:** Snowflake-style COW shares HNSW index, copies only modified nodes (10-20% memory overhead).
---
### `checkout(branch)` → `Promise<void>`
Switch to a different branch.
```typescript
await brain.checkout('main')
await brain.checkout('test-feature')
```
**Parameters:**
- `branch`: `string` - Branch name
---
### `listBranches()` → `Promise<string[]>`
List all branches.
```typescript
const branches = await brain.listBranches()
// ['main', 'test-feature', 'experiment-2']
```
---
### `getCurrentBranch()` → `Promise<string>`
Get current branch name.
```typescript
const current = await brain.getCurrentBranch()
// 'main'
```
---
### `commit(options?)` → `Promise<string>`
Create a commit snapshot.
```typescript
const commitId = await brain.commit({
message: 'Add new features',
author: 'dev@example.com',
metadata: { ticket: 'PROJ-123' }
})
```
**Parameters:**
- `message?`: `string` - Commit message
- `author?`: `string` - Author email
- `metadata?`: `object` - Additional commit metadata
**Returns:** `Promise<string>` - Commit ID
---
### `deleteBranch(branch)` → `Promise<void>`
Delete a branch (cannot delete 'main').
```typescript
await brain.deleteBranch('old-experiment')
```
---
### `getHistory(options?)` → `Promise<Commit[]>`
Get commit history.
```typescript
const history = await brain.getHistory({
branch: 'main',
limit: 10
})
```
---
### `asOf(commitId, options?)` → `Promise<Brainy>`
Create a read-only snapshot at a specific commit for time-travel queries.
```typescript
// Get commit ID from history
const commits = await brain.getHistory({ limit: 1 })
const commitId = commits[0].id
// Create snapshot (lazy-loading, no eager data loading)
const snapshot = await brain.asOf(commitId, {
cacheSize: 10000 // LRU cache size (default: 10000)
})
// Query historical state - full Triple Intelligence works!
const results = await snapshot.find({
query: 'AI research',
where: { category: 'technology' }
})
// Get historical relationships
const related = await snapshot.getRelated(entityId, { depth: 2 })
// MUST close when done to free memory
await snapshot.close()
```
**Parameters:**
- `commitId`: `string` - Commit hash to snapshot from
- `options?`: `object`
- `cacheSize?`: `number` - LRU cache size for lazy-loading (default: 10000)
**Returns:** `Promise<Brainy>` - Read-only Brainy instance with historical state
**Features:**
- **Lazy-Loading** - Loads entities on-demand, not eagerly
- **Bounded Memory** - LRU cache prevents memory bloat
- **Full Query Support** - All find(), getRelated(), etc. work on historical data
- **Read-Only** - Prevents accidental modifications to history
**Important:** Always call `snapshot.close()` when done to release resources.
---
## Entity Versioning
Git-style versioning for individual entities with content-addressable storage.
### Overview
Entity Versioning provides time-travel and history tracking for individual entities:
- **Content-Addressable Storage** - Deduplication via SHA-256 hashing
- **Zero-Config** - Lazy initialization, uses existing indexes
- **Branch-Isolated** - Versions isolated per branch
- **Selective Auto-Versioning** - Optional augmentation for automatic version creation
- **Production-Scale** - Designed for billions of entities
- **VFS File Support** - Full versioning for VFS files with actual blob content
---
### `versions.save(entityId, options?)` → `Promise<EntityVersion>`
Save a new version of an entity.
```typescript
// Save version with tag
const version = await brain.versions.save('user-123', {
tag: 'v1.0',
description: 'Initial user profile',
metadata: { author: 'dev@example.com' }
})
console.log(version.version) // 1
console.log(version.contentHash) // SHA-256 hash
console.log(version.createdAt) // Timestamp
```
**Parameters:**
- `entityId`: `string` - Entity ID to version
- `options?`: `object`
- `tag?`: `string` - Version tag (e.g., 'v1.0', 'beta')
- `description?`: `string` - Version description
- `metadata?`: `object` - Additional version metadata
**Returns:** `Promise<EntityVersion>` - Created version
**Features:**
- Automatic deduplication (identical content = same version)
- Sequential version numbering (1, 2, 3, ...)
- Content-addressable storage (SHA-256)
---
### `versions.list(entityId, options?)` → `Promise<EntityVersion[]>`
List all versions of an entity.
```typescript
const versions = await brain.versions.list('user-123', {
limit: 10,
offset: 0
})
versions.forEach(v => {
console.log(`Version ${v.version}: ${v.tag} - ${v.description}`)
})
```
**Parameters:**
- `entityId`: `string` - Entity ID
- `options?`: `object`
- `limit?`: `number` - Max versions to return
- `offset?`: `number` - Skip versions
**Returns:** `Promise<EntityVersion[]>` - Versions (newest first)
---
### `versions.restore(entityId, versionOrTag)` → `Promise<void>`
Restore entity to a previous version.
```typescript
// Restore by version number
await brain.versions.restore('user-123', 1)
// Restore by tag
await brain.versions.restore('user-123', 'beta')
```
**Parameters:**
- `entityId`: `string` - Entity ID
- `versionOrTag`: `number | string` - Version number or tag
---
### `versions.compare(entityId, version1, version2)` → `Promise<VersionDiff>`
Compare two versions.
```typescript
const diff = await brain.versions.compare('user-123', 1, 2)
console.log(diff.totalChanges) // Total changes
console.log(diff.modified) // Modified fields
console.log(diff.added) // Added fields
console.log(diff.removed) // Removed fields
// Check specific changes
const nameChange = diff.modified.find(c => c.path === 'metadata.name')
console.log(`${nameChange.oldValue}${nameChange.newValue}`)
```
**Returns:** `Promise<VersionDiff>` - Detailed diff with field-level changes
---
### `versions.getContent(entityId, versionOrTag)` → `Promise<EntitySnapshot>`
Get version content without restoring.
```typescript
// View old version without changing current state
const v1Content = await brain.versions.getContent('user-123', 1)
console.log(v1Content.metadata.name) // Old name
// Current state unchanged
const current = await brain.get('user-123')
console.log(current.metadata.name) // Current name
```
---
### `versions.undo(entityId)` → `Promise<void>`
Undo to previous version (shorthand for restore to latest-1).
```typescript
// Make a bad change
await brain.update('user-123', { status: 'deleted' })
// Undo immediately
await brain.versions.undo('user-123')
```
**Alias:** `versions.revert(entityId)`
---
### `versions.prune(entityId, options)` → `Promise<PruneResult>`
Clean up old versions.
```typescript
const result = await brain.versions.prune('user-123', {
keepRecent: 10, // Keep 10 most recent
keepTagged: true, // Always keep tagged versions
olderThan: Date.now() - 30 * 24 * 60 * 60 * 1000 // Older than 30 days
})
console.log(`Deleted ${result.deleted}, kept ${result.kept}`)
```
**Parameters:**
- `keepRecent?`: `number` - Keep N most recent versions
- `keepTagged?`: `boolean` - Always keep tagged versions (default: true)
- `olderThan?`: `number` - Only prune versions older than timestamp
---
### `versions.getLatest(entityId)` → `Promise<EntityVersion | null>`
Get latest version.
```typescript
const latest = await brain.versions.getLatest('user-123')
if (latest) {
console.log(`Latest: v${latest.version} (${latest.tag})`)
}
```
---
### `versions.getVersionByTag(entityId, tag)` → `Promise<EntityVersion | null>`
Get version by tag.
```typescript
const beta = await brain.versions.getVersionByTag('user-123', 'beta')
```
---
### `versions.count(entityId)` → `Promise<number>`
Count versions for an entity.
```typescript
const count = await brain.versions.count('user-123')
console.log(`${count} versions saved`)
```
---
### `versions.hasVersions(entityId)` → `Promise<boolean>`
Check if entity has versions.
```typescript
if (await brain.versions.hasVersions('user-123')) {
console.log('Entity has version history')
}
```
---
### Auto-Versioning Augmentation
Automatically create versions on entity updates.
```typescript
import { VersioningAugmentation } from '@soulcraft/brainy'
// Configure auto-versioning
const versioning = new VersioningAugmentation({
enabled: true,
onUpdate: true, // Version on update()
onDelete: false, // Don't version on delete
entities: ['user-*'], // Only version users
excludeEntities: ['temp-*'],
excludeTypes: ['temporary'],
keepRecent: 50, // Auto-prune old versions
keepTagged: true
})
// Apply augmentation
brain.augment(versioning)
// Now updates auto-create versions
await brain.update('user-123', { name: 'New Name' })
// Version automatically created!
const versions = await brain.versions.list('user-123')
console.log(`Auto-created version: ${versions[0].version}`)
```
**Configuration:**
- `enabled`: `boolean` - Enable/disable augmentation
- `onUpdate`: `boolean` - Version on entity updates
- `onDelete`: `boolean` - Version before deletion
- `entities`: `string[]` - Entity ID patterns (glob-style)
- `excludeEntities`: `string[]` - Exclusion patterns
- `types`: `string[]` - Entity types to version
- `excludeTypes`: `string[]` - Types to exclude
- `keepRecent`: `number` - Auto-prune to keep N versions
- `keepTagged`: `boolean` - Always keep tagged versions
**Pattern Matching:**
- `['*']` - All entities
- `['user-*']` - All IDs starting with "user-"
- `['*-prod']` - All IDs ending with "-prod"
- `['user-*', 'account-*']` - Multiple patterns
---
### Branch Isolation
Versions are isolated per branch.
```typescript
// Save version on main
await brain.versions.save('doc-1', { tag: 'main-v1' })
// Fork and create version
const feature = await brain.fork('feature')
await feature.update('doc-1', { content: 'Feature update' })
await feature.versions.save('doc-1', { tag: 'feature-v1' })
// Versions are isolated
const mainVersions = await brain.versions.list('doc-1')
const featureVersions = await feature.versions.list('doc-1')
console.log(mainVersions.length !== featureVersions.length) // true
```
---
### Architecture
**Content-Addressable Storage:**
- SHA-256 hashing for deduplication
- Identical content = single storage blob
- Efficient for entities with few changes
**Metadata Indexing:**
- Leverages existing MetadataIndexManager
- Fast lookups by entity ID
- Version number indexing
**Storage Structure:**
```
_version:{entityId}:{versionNum}:{branch} // Version metadata
_version_blob:{contentHash} // Content blob (deduplicated)
```
**Performance:**
- Version save: O(1) if duplicate, O(log N) for index update
- Version list: O(K) where K = version count
- Version restore: O(log N) lookup + O(1) restore
- Pruning: O(K) where K = versions pruned
---
### Examples
#### Basic Versioning Workflow
```typescript
// Create entity
await brain.add({
data: 'User profile',
id: 'user-123',
type: 'user',
metadata: { name: 'Alice', email: 'alice@example.com' }
})
// Save v1
await brain.versions.save('user-123', { tag: 'v1.0' })
// Make changes
await brain.update('user-123', { name: 'Alice Smith' })
// Save v2
await brain.versions.save('user-123', { tag: 'v2.0' })
// Compare versions
const diff = await brain.versions.compare('user-123', 1, 2)
// Restore to v1 if needed
await brain.versions.restore('user-123', 'v1.0')
```
#### Release Management
```typescript
// Development workflow
await brain.update('app-config', { version: '1.0.0-alpha' })
await brain.versions.save('app-config', { tag: 'alpha' })
await brain.update('app-config', { version: '1.0.0-beta' })
await brain.versions.save('app-config', { tag: 'beta' })
await brain.update('app-config', { version: '1.0.0' })
await brain.versions.save('app-config', { tag: 'release' })
// Rollback to beta if issues found
await brain.versions.restore('app-config', 'beta')
```
#### Audit Trail
```typescript
// Track all changes
const versioning = new VersioningAugmentation({
enabled: true,
onUpdate: true,
entities: ['audit-*'],
keepRecent: 100 // Keep 100 versions for audit
})
brain.augment(versioning)
// All updates now tracked
await brain.update('audit-record-1', { status: 'modified' })
await brain.update('audit-record-1', { status: 'approved' })
// View complete history
const versions = await brain.versions.list('audit-record-1')
versions.forEach(v => {
console.log(`${v.createdAt}: ${v.description}`)
})
```
#### VFS File Versioning
```typescript
// VFS files can be versioned with actual blob content
await brain.vfs.writeFile('/docs/readme.md', 'Version 1 content')
// Get the file's entity ID
const stat = await brain.vfs.stat('/docs/readme.md')
// Save version 1
await brain.versions.save(stat.entityId, { tag: 'v1', description: 'Initial draft' })
// Modify the file
await brain.vfs.writeFile('/docs/readme.md', 'Version 2 - updated content')
// Save version 2
await brain.versions.save(stat.entityId, { tag: 'v2', description: 'Updated docs' })
// Compare versions - content is DIFFERENT
const v1 = await brain.versions.getContent(stat.entityId, 1)
const v2 = await brain.versions.getContent(stat.entityId, 2)
console.log(v1.data !== v2.data) // true
// Restore to v1 - writes content back to blob storage
await brain.versions.restore(stat.entityId, 'v1')
// File is now back to v1
const content = await brain.vfs.readFile('/docs/readme.md')
console.log(content.toString()) // 'Version 1 content'
```
---
**[📖 Complete Versioning Guide →](../features/entity-versioning.md)**
---
## Virtual Filesystem (VFS)
Access via `brain.vfs` (property, not method). Auto-initialized during `brain.init()`.
### Filtering VFS Entities
All VFS entities (files/folders) have `metadata.isVFSEntity: true` set automatically.
Use this to filter VFS entities from semantic search results:
```typescript
// Exclude VFS entities from semantic search
const semanticOnly = await brain.find({
query: 'artificial intelligence',
where: {
isVFSEntity: { notEquals: true } // Only semantic entities
}
})
// Or filter to ONLY VFS entities
const vfsOnly = await brain.find({
where: {
isVFSEntity: { equals: true } // Only VFS files/folders
}
})
// Check if an entity is a VFS entity
if (entity.metadata.isVFSEntity === true) {
console.log('This is a VFS file or folder')
}
```
**Why this matters:** Without filtering, VFS files/folders can appear in concept explorers and semantic search results where they don't belong.
---
### Basic File Operations
#### `vfs.readFile(path, options?)` → `Promise<Buffer>`
Read file content.
```typescript
const content = await brain.vfs.readFile('/docs/README.md')
console.log(content.toString())
```
---
#### `vfs.writeFile(path, data, options?)` → `Promise<void>`
Write file content.
```typescript
await brain.vfs.writeFile('/docs/README.md', 'New content', {
encoding: 'utf-8'
})
```
---
#### `vfs.unlink(path)` → `Promise<void>`
Delete a file.
```typescript
await brain.vfs.unlink('/docs/old-file.md')
```
---
### Directory Operations
#### `vfs.mkdir(path, options?)` → `Promise<void>`
Create directory.
```typescript
await brain.vfs.mkdir('/projects/new-app', { recursive: true })
```
---
#### `vfs.readdir(path, options?)` → `Promise<string[] | Dirent[]>`
List directory contents.
```typescript
const files = await brain.vfs.readdir('/projects')
// With file types
const entries = await brain.vfs.readdir('/projects', { withFileTypes: true })
entries.forEach(entry => {
console.log(entry.name, entry.isDirectory() ? 'DIR' : 'FILE')
})
```
---
#### `vfs.rmdir(path, options?)` → `Promise<void>`
Remove directory.
```typescript
await brain.vfs.rmdir('/old-project', { recursive: true })
```
---
#### `vfs.stat(path)` → `Promise<Stats>`
Get file/directory stats.
```typescript
const stats = await brain.vfs.stat('/docs/README.md')
console.log(stats.size) // File size
console.log(stats.mtime) // Modified time
console.log(stats.isDirectory()) // Is directory?
```
---
### Semantic Operations
#### `vfs.search(query, options?)` → `Promise<SearchResult[]>`
Semantic file search.
```typescript
const results = await brain.vfs.search('React components with hooks', {
path: '/src',
limit: 10
})
```
---
#### `vfs.findSimilar(path, options?)` → `Promise<SearchResult[]>`
Find similar files.
```typescript
const similar = await brain.vfs.findSimilar('/src/App.tsx', {
limit: 5,
threshold: 0.7
})
```
---
### Tree Operations
#### `vfs.getTreeStructure(path, options?)` → `Promise<TreeNode>`
Get directory tree (prevents infinite recursion).
```typescript
const tree = await brain.vfs.getTreeStructure('/projects', {
maxDepth: 3
})
```
---
#### `vfs.getDescendants(path, options?)` → `Promise<VFSEntity[]>`
Get all descendants with optional filtering.
```typescript
const files = await brain.vfs.getDescendants('/src', {
filter: (entity) => entity.name.endsWith('.tsx')
})
```
---
### Metadata & Relationships
#### `vfs.getMetadata(path)` → `Promise<Metadata>`
Get file metadata.
```typescript
const meta = await brain.vfs.getMetadata('/src/App.tsx')
console.log(meta.todos) // Extracted TODOs
console.log(meta.tags) // Tags
```
---
#### `vfs.getRelationships(path)` → `Promise<Relation[]>`
Get file relationships.
```typescript
const rels = await brain.vfs.getRelationships('/src/App.tsx')
// Returns: imports, references, dependencies
```
---
#### `vfs.getTodos(path)` → `Promise<Todo[]>`
Get TODOs from a file.
```typescript
const todos = await brain.vfs.getTodos('/src/App.tsx')
```
---
#### `vfs.getAllTodos(path?)` → `Promise<Todo[]>`
Get all TODOs from directory tree.
```typescript
const allTodos = await brain.vfs.getAllTodos('/src')
```
---
### Project Analysis
#### `vfs.getProjectStats(path?)` → `Promise<Stats>`
Get project statistics.
```typescript
const stats = await brain.vfs.getProjectStats('/projects/my-app')
console.log(stats.fileCount)
console.log(stats.totalSize)
console.log(stats.fileTypes) // Breakdown by extension
```
---
#### `vfs.searchEntities(query)` → `Promise<VFSEntity[]>`
Search for VFS entities by metadata.
```typescript
const tsxFiles = await brain.vfs.searchEntities({
type: 'file',
extension: '.tsx'
})
```
---
**[📖 Complete VFS Documentation →](../vfs/QUICK_START.md)**
---
## Neural API
Access advanced AI features via `brain.neural()` (method that returns NeuralAPI instance).
### `neural().similar(a, b, options?)` → `Promise<number | SimilarityResult>`
Calculate semantic similarity.
```typescript
// Simple similarity score
const score = await brain.neural().similar(
'renewable energy',
'sustainable power'
) // 0.87
// Detailed result
const result = await brain.neural().similar('text1', 'text2', {
detailed: true
})
console.log(result.score)
console.log(result.explanation)
```
---
### `neural().clusters(input?, options?)` → `Promise<Cluster[]>`
Automatic clustering.
```typescript
const clusters = await brain.neural().clusters({
algorithm: 'kmeans',
k: 5,
minSize: 3
})
clusters.forEach(cluster => {
console.log(cluster.label)
console.log(cluster.items)
console.log(cluster.centroid)
})
```
---
### `neural().neighbors(id, options?)` → `Promise<Neighbor[]>`
Find k-nearest neighbors.
```typescript
const neighbors = await brain.neural().neighbors(entityId, {
k: 10,
threshold: 0.7
})
```
---
### `neural().outliers(threshold?)` → `Promise<string[]>`
Detect outlier entities.
```typescript
const outliers = await brain.neural().outliers(0.3)
// Returns entity IDs that are outliers
```
---
### `neural().visualize(options?)` → `Promise<VizData>`
Generate visualization data.
```typescript
const vizData = await brain.neural().visualize({
maxNodes: 100,
dimensions: 3,
algorithm: 'force',
includeEdges: true
})
// Use with D3.js, Cytoscape, GraphML tools
```
---
### Performance Methods
#### `neural().clusterFast(options)` → `Promise<Cluster[]>`
Fast clustering for large datasets.
```typescript
const clusters = await brain.neural().clusterFast({
k: 10,
maxIterations: 50
})
```
---
#### `neural().clusterLarge(options)` → `Promise<Cluster[]>`
Streaming clustering for very large datasets.
```typescript
const clusters = await brain.neural().clusterLarge({
k: 20,
batchSize: 1000
})
```
---
## Import & Export
### `import(source, options?)` → `Promise<ImportResult>`
Smart import with auto-detection (CSV, Excel, PDF, JSON, URLs).
```typescript
// CSV import
await brain.import('data.csv', {
format: 'csv',
createEntities: true
})
// Excel import
await brain.import('sales.xlsx', {
format: 'excel',
sheets: ['Q1', 'Q2']
})
// PDF import
await brain.import('research.pdf', {
format: 'pdf',
extractTables: true
})
// URL import
await brain.import('https://api.example.com/data.json')
```
**Parameters:**
- `source`: `string | Buffer | object` - File path, URL, buffer, or object
- `options?`: Import configuration
- `format?`: `'csv' | 'excel' | 'pdf' | 'json'` - Auto-detected if omitted
- `createEntities?`: `boolean` - Create entities from rows
- `sheets?`: `string[]` - Excel sheets to import
- `extractTables?`: `boolean` - Extract tables from PDF
**Returns:** `Promise<ImportResult>` - Import statistics
**Note:** Import always uses the current branch.
**[📖 Complete Import Guide →](../guides/import-anything.md)**
---
### Export & Snapshots
```typescript
// Export to file
await brain.export('/path/to/backup.brainy')
// Create instant snapshot using COW fork
await brain.fork('backup-2025-01-19')
// Time-travel to specific commit
const snapshot = await brain.asOf(commitId)
const entities = await snapshot.find({ limit: 100 })
```
---
## Configuration
### Constructor Options
```typescript
const brain = new Brainy({
// Storage configuration
storage: {
type: 'memory', // memory | opfs | filesystem | s3 | r2 | gcs | azure
path: './brainy-data', // For filesystem storage
compression: true, // Enable gzip compression (60-80% savings)
// Cloud storage configs (see Storage Adapters section)
s3Storage: { ... },
r2Storage: { ... },
gcsStorage: { ... },
azureStorage: { ... }
},
// HNSW vector index config
hnsw: {
M: 16, // Connections per layer
efConstruction: 200, // Construction quality
efSearch: 100, // Search quality
typeAware: true // Enable type-aware indexing
},
// Model configuration (embedded in WASM - zero config needed)
// Model: all-MiniLM-L6-v2 (384 dimensions)
// Device: CPU via WASM (works everywhere)
// Cache configuration
cache: {
enabled: true,
maxSize: 10000,
ttl: 3600000 // 1 hour in ms
}
})
await brain.init() // Required! VFS auto-initialized
```
---
## Storage Adapters
All 7 storage adapters support **copy-on-write branching**.
### Memory (Default)
```typescript
const brain = new Brainy({
storage: { type: 'memory' }
})
```
**Use case:** Development, testing, prototyping
---
### OPFS (Browser)
```typescript
const brain = new Brainy({
storage: { type: 'opfs' }
})
```
**Use case:** Browser applications with persistent storage
---
### Filesystem (Node.js)
```typescript
const brain = new Brainy({
storage: {
type: 'filesystem',
path: './brainy-data',
compression: true // 60-80% space savings
}
})
```
**Use case:** Node.js applications, local persistence
---
### AWS S3
```typescript
const brain = new Brainy({
storage: {
type: 's3',
s3Storage: {
bucketName: 'my-brainy-data',
region: 'us-east-1',
accessKeyId: process.env.AWS_ACCESS_KEY_ID,
secretAccessKey: process.env.AWS_SECRET_ACCESS_KEY
}
}
})
// Enable Intelligent-Tiering for 96% cost savings
await brain.storage.enableIntelligentTiering('entities/', 'auto-tier')
```
**Use case:** Production deployments, scalable storage
**[📖 AWS S3 Cost Optimization →](../operations/cost-optimization-aws-s3.md)**
---
### Cloudflare R2
```typescript
const brain = new Brainy({
storage: {
type: 'r2',
r2Storage: {
accountId: process.env.CF_ACCOUNT_ID,
bucketName: 'my-brainy-data',
accessKeyId: process.env.CF_ACCESS_KEY_ID,
secretAccessKey: process.env.CF_SECRET_ACCESS_KEY
}
}
})
```
**Use case:** Zero egress fees, cost-effective storage
**[📖 R2 Cost Optimization →](../operations/cost-optimization-cloudflare-r2.md)**
---
### Google Cloud Storage (GCS)
```typescript
const brain = new Brainy({
storage: {
type: 'gcs',
gcsStorage: {
bucketName: 'my-brainy-data',
projectId: process.env.GCP_PROJECT_ID,
keyFilename: './gcp-key.json'
}
}
})
// Enable auto-tiering
await brain.storage.enableAutoclass({
terminalStorageClass: 'ARCHIVE'
})
```
**Use case:** Google Cloud ecosystem, global distribution
**[📖 GCS Cost Optimization →](../operations/cost-optimization-gcs.md)**
---
### Azure Blob Storage
```typescript
const brain = new Brainy({
storage: {
type: 'azure',
azureStorage: {
accountName: process.env.AZURE_STORAGE_ACCOUNT,
accountKey: process.env.AZURE_STORAGE_KEY,
containerName: 'brainy-data'
}
}
})
```
**Use case:** Azure ecosystem, enterprise deployments
**[📖 Azure Cost Optimization →](../operations/cost-optimization-azure.md)**
---
## Utility Methods
### `clear()` → `Promise<void>`
Clear all data (entities and relationships).
```typescript
await brain.clear()
```
---
### `getNounCount()` → `Promise<number>`
Get total entity count.
```typescript
const count = await brain.getNounCount()
```
---
### `getVerbCount()` → `Promise<number>`
Get total relationship count.
```typescript
const count = await brain.getVerbCount()
```
---
### `embed(data)` → `Promise<number[]>` ✨
Generate embedding vector from text or data.
```typescript
const vector = await brain.embed('Hello world')
// 384-dimensional vector
console.log(vector.length) // 384
```
---
### `embedBatch(texts)` → `Promise<number[][]>` ✨
Batch embed multiple texts using native WASM batch API (single forward pass).
```typescript
const embeddings = await brain.embedBatch([
'Machine learning is fascinating',
'Deep neural networks',
'Natural language processing'
])
console.log(embeddings.length) // 3
console.log(embeddings[0].length) // 384
```
> Uses the WASM engine's native `embed_batch()` for a single model forward pass instead of N individual calls. This is the same batch API used internally by `highlight()`.
---
### `similarity(textA, textB)` → `Promise<number>` ✨
Calculate semantic similarity between two texts.
```typescript
const score = await brain.similarity(
'The cat sat on the mat',
'A feline was resting on the rug'
)
console.log(score) // ~0.85 (high semantic similarity)
```
**Returns:** Score from 0 (different) to 1 (identical meaning)
---
### `neighbors(entityId, options?)` → `Promise<string[]>` ✨
Get graph neighbors of an entity.
```typescript
// Get all connected entities
const neighbors = await brain.neighbors(entityId)
// Get outgoing connections only
const outgoing = await brain.neighbors(entityId, {
direction: 'outgoing',
limit: 10
})
// Multi-hop traversal
const extended = await brain.neighbors(entityId, {
depth: 2,
direction: 'both'
})
```
**Options:**
- `direction`: `'outgoing' | 'incoming' | 'both'` (default: 'both')
- `depth`: `number` - Traversal depth (default: 1)
- `verbType`: `VerbType` - Filter by relationship type
- `limit`: `number` - Maximum neighbors to return
---
### `findDuplicates(options?)` → `Promise<DuplicateResult[]>` ✨
Find semantic duplicates in the database.
```typescript
// Find all duplicates
const duplicates = await brain.findDuplicates()
for (const group of duplicates) {
console.log('Original:', group.entity.id)
for (const dup of group.duplicates) {
console.log(` Duplicate: ${dup.entity.id} (${dup.similarity.toFixed(2)})`)
}
}
// Find person duplicates with higher threshold
const personDupes = await brain.findDuplicates({
type: NounType.PERSON,
threshold: 0.9,
limit: 50
})
```
**Options:**
- `threshold`: `number` - Minimum similarity (default: 0.85)
- `type`: `NounType` - Filter by entity type
- `limit`: `number` - Maximum duplicate groups (default: 100)
---
### `indexStats()` → `Promise<IndexStats>` ✨
Get comprehensive index statistics.
```typescript
const stats = await brain.indexStats()
console.log(`Entities: ${stats.entities}`)
console.log(`Vectors: ${stats.vectors}`)
console.log(`Relationships: ${stats.relationships}`)
console.log(`Memory: ${(stats.memoryUsage.total / 1024 / 1024).toFixed(1)}MB`)
console.log(`Fields: ${stats.metadataFields.join(', ')}`)
```
**Returns:**
- `entities` - Total entity count
- `vectors` - Total vectors in HNSW index
- `relationships` - Total relationships in graph
- `metadataFields` - Indexed metadata fields
- `memoryUsage.vectors` - Vector memory (bytes)
- `memoryUsage.graph` - Graph memory (bytes)
- `memoryUsage.metadata` - Metadata index memory (bytes)
- `memoryUsage.total` - Total memory usage
---
### `cluster(options?)` → `Promise<ClusterResult[]>` ✨
Cluster entities by semantic similarity.
```typescript
// Find all clusters
const clusters = await brain.cluster()
for (const cluster of clusters) {
console.log(`${cluster.clusterId}: ${cluster.entities.length} entities`)
}
// Find document clusters with centroids
const docClusters = await brain.cluster({
type: NounType.Document,
threshold: 0.85,
minClusterSize: 3,
includeCentroid: true
})
```
**Options:**
- `threshold`: `number` - Similarity threshold (default: 0.8)
- `type`: `NounType` - Filter by entity type
- `minClusterSize`: `number` - Minimum cluster size (default: 2)
- `limit`: `number` - Maximum clusters to return (default: 100)
- `includeCentroid`: `boolean` - Calculate cluster centroids (default: false)
**Returns:**
- `clusterId` - Unique cluster identifier
- `entities` - Array of entities in the cluster
- `centroid` - Average embedding vector (if includeCentroid is true)
---
### `getStats()` → `Statistics`
Get comprehensive statistics.
```typescript
const stats = brain.getStats()
console.log(stats.entityCount)
console.log(stats.relationshipCount)
console.log(stats.cacheHitRate)
```
---
## Lifecycle
### Initialization
```typescript
const brain = new Brainy(config)
await brain.init() // Required! VFS auto-initialized here
```
VFS is auto-initialized during `brain.init()` - no separate `vfs.init()` needed!
---
### Shutdown
```typescript
await brain.shutdown() // Graceful shutdown, flush caches
```
---
## Examples
### Basic CRUD
```typescript
// Create
const id = await brain.add({
data: 'Quantum computing breakthrough',
type: NounType.Concept,
metadata: { category: 'tech', year: 2024 }
})
// Read
const entity = await brain.get(id)
// Update
await brain.update({
id,
metadata: { updated: true }
})
// Delete
await brain.delete(id)
```
---
### Knowledge Graphs
```typescript
// Create entities
const ai = await brain.add({
data: 'Artificial Intelligence',
type: NounType.Concept
})
const ml = await brain.add({
data: 'Machine Learning',
type: NounType.Concept
})
// Create relationship
await brain.relate({
from: ml,
to: ai,
type: VerbType.IsA
})
// Traverse graph
const results = await brain.find({
connected: { from: ai, depth: 2 }
})
```
---
### Triple Intelligence Query
```typescript
const results = await brain.find({
query: 'modern frontend frameworks', // 🔍 Vector
where: { // 📊 Document
year: { greaterThan: 2020 },
category: { oneOf: ['framework', 'library'] }
},
connected: { // 🕸️ Graph
to: reactId,
depth: 2,
type: VerbType.BuiltOn
},
limit: 10
})
```
---
### Git-Style Workflow
```typescript
// Fork for experimentation
const experiment = await brain.fork('test-migration')
// Make changes in isolation
await experiment.add({
data: 'New feature',
type: NounType.Document
})
// Commit your work
await experiment.commit({
message: 'Add new feature',
author: 'dev@example.com'
})
// Switch to experimental branch to make it active
await brain.checkout('test-migration')
```
---
### VFS File Management
```typescript
// Write files
await brain.vfs.writeFile('/docs/README.md', 'Project documentation')
await brain.vfs.mkdir('/src/components', { recursive: true })
// Read files
const content = await brain.vfs.readFile('/docs/README.md')
// Semantic search
const reactFiles = await brain.vfs.search('React components with hooks', {
path: '/src'
})
// Get tree structure (safe, prevents infinite recursion)
const tree = await brain.vfs.getTreeStructure('/projects', {
maxDepth: 3
})
```
---
## Type System Reference
Stage 3 CANONICAL taxonomy with 169 types (42 nouns + 127 verbs)
### Noun Types (42)
Brainy uses a comprehensive noun type system covering 96-97% of human knowledge:
**Core Entity Types (7)**
- `NounType.Person` - Individual human entities
- `NounType.Organization` - Companies, institutions, collectives
- `NounType.Location` - Geographic and spatial entities
- `NounType.Thing` - Physical objects and artifacts
- `NounType.Concept` - Abstract ideas and principles
- `NounType.Event` - Temporal occurrences
- `NounType.Agent` - AI agents, bots, automated systems
**Digital/Content Types (4)**
- `NounType.Document` - Text-based files and written content
- `NounType.Media` - Audio, video, images
- `NounType.File` - Generic digital files
- `NounType.Message` - Communication content
**Business Types (4)**
- `NounType.Product` - Commercial products
- `NounType.Service` - Service offerings
- `NounType.Task` - Actions, todos, work items
- `NounType.Project` - Organized initiatives
**Scientific Types (2)**
- `NounType.Hypothesis` - Theories and propositions
- `NounType.Experiment` - Studies and investigations
**And 25 more types** including: `Organism`, `Substance`, `Quality`, `TimeInterval`, `Function`, `Proposition`, `Collection`, `Dataset`, `Process`, `State`, `Role`, `Language`, `Currency`, `Measurement`, `Contract`, `Regulation`, `Interface`, `Resource`, `Custom`, `SocialGroup`, `Institution`, `Norm`, `InformationContent`, `InformationBearer`, `Relationship`
### Verb Types (127)
Brainy supports 127 relationship types organized into categories:
**Foundational (7)**
- `VerbType.InstanceOf`, `VerbType.SubclassOf`, `VerbType.ParticipatesIn`
- `VerbType.RelatedTo`, `VerbType.Contains`, `VerbType.PartOf`, `VerbType.References`
**Spatial & Temporal (14)**
- Location: `LocatedAt`, `AdjacentTo`, `ContainsSpatially`, `OverlapsSpatially`, `Above`, `Below`, `Inside`, `Outside`, `Facing`
- Time: `Precedes`, `During`, `OccursAt`, `Overlaps`, `ImmediatelyAfter`, `SimultaneousWith`
**Causal & Dependency (11)**
- Direct: `Causes`, `Enables`, `Prevents`, `DependsOn`, `Requires`
- Modal: `CanCause`, `MustCause`, `WouldCauseIf`, `ProbablyCauses`
- Variations: `RigidlyDependsOn`, `FunctionallyDependsOn`, `HistoricallyDependsOn`
**Creation & Change (10)**
- Lifecycle: `Creates`, `Transforms`, `Becomes`, `Modifies`, `Consumes`, `Destroys`
- Properties: `GainsProperty`, `LosesProperty`, `RemainsSame`, `PersistsThrough`
**Social & Communication (8)**
- `MemberOf`, `WorksWith`, `FriendOf`, `Follows`, `Likes`, `ReportsTo`, `Mentors`, `Communicates`
**Epistemic & Modal (14)**
- Knowledge: `Knows`, `Doubts`, `Believes`, `Learns`
- Mental states: `Desires`, `Intends`, `Fears`, `Loves`, `Hates`, `Hopes`, `Perceives`
- Modality: `CouldBe`, `MustBe`, `Counterfactual`
**Measurement & Comparison (9)**
- `Measures`, `MeasuredIn`, `ConvertsTo`, `HasMagnitude`, `GreaterThan`
- `SimilarityDegree`, `ApproximatelyEquals`, `MoreXThan`, `HasDegree`
**And 54 more specialized verbs** including ownership, composition, uncertainty, deontic relationships (obligations/permissions), context-dependent truth, spatial/temporal variations, information theory, and meta-level relationships.
### Complete Reference
For the full taxonomy with all 169 types and their descriptions, see:
- **[Stage 3 CANONICAL Taxonomy](../STAGE3-CANONICAL-TAXONOMY.md)** - Complete list with categories
- **[Noun-Verb Taxonomy Architecture](../architecture/noun-verb-taxonomy.md)** - Design rationale
### Migration from
**Breaking Changes:**
- `NounType.Content` removed Use `Document`, `Message`, or `InformationContent`
- `NounType.User` removed Use `Person` or `Agent`
- `NounType.Topic` removed Use `Concept` or `Category`
**New Types Added:**
- **+11 noun types**: Agent, Organism, Substance, Quality, TimeInterval, Function, Proposition, Custom, SocialGroup, Institution, Norm, InformationContent, InformationBearer, Relationship
- **+87 verb types**: Extensive additions across all categories
---
## Key Features
- **Entity Versioning** - Git-style versioning for individual entities
- **Content-Addressable Storage** - SHA-256 deduplication for versions
- **Auto-Versioning Augmentation** - Automatic version creation on updates
- **Branch-Isolated Versions** - Versions isolated per branch
- **VFS Entity Filtering** - All VFS entities now have `isVFSEntity: true` flag
- **VFS Auto-Initialization** - No more separate `vfs.init()` calls
- **VFS Property Access** - Use `brain.vfs.method()` instead of `brain.vfs().method()`
- **Complete COW Support** - All 20 TypeAware methods use COW helpers
- **Verified Import/Export** - Work correctly with current branch
- **Instant Fork** - Snowflake-style copy-on-write (<100ms fork time)
- **Git-Style Branching** - fork, commit, checkout, listBranches
- **Full Branch Isolation** - Parent and fork fully isolated
- **Read-Through Inheritance** - Forks see parent + own data
- **Universal Storage Support** - All 7 adapters support branching
**[📖 Complete Changes →](../../.strategy/v5.1.0-CHANGES.md)**
---
## Support & Resources
- **📖 Documentation:** [Full Documentation](../)
- **🐛 Issues:** [GitHub Issues](https://github.com/soulcraftlabs/brainy/issues)
- **💬 Discussions:** [GitHub Discussions](https://github.com/soulcraftlabs/brainy/discussions)
- **📦 NPM:** [@soulcraft/brainy](https://www.npmjs.com/package/@soulcraft/brainy)
- **⭐ GitHub:** [Star us](https://github.com/soulcraftlabs/brainy)
---
## See Also
- **[Data Model](../DATA_MODEL.md)** - Entity structure, data vs metadata, storage fields
- **[Query Operators](../QUERY_OPERATORS.md)** - All BFO operators with examples and indexed vs in-memory matrix
- **[Triple Intelligence Architecture](../architecture/triple-intelligence.md)** - How vector + graph + document work together
- **[Find System](../FIND_SYSTEM.md)** - Natural language find() details
- **[VFS Quick Start](../vfs/QUICK_START.md)** - Complete VFS documentation
- **[Import Anything Guide](../guides/import-anything.md)** - CSV, Excel, PDF, URL imports
- **[Cloud Deployment](../deployment/CLOUD_DEPLOYMENT_GUIDE.md)** - Production deployment
- **[Instant Fork](../features/instant-fork.md)** - Git-style branching guide
---
**License:** MIT © Brainy Contributors
---
*Brainy - The Knowledge Operating System*
*From prototype to planet-scale • Zero configuration • Triple Intelligence™ • Git-Style Branching*