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160 commits

Author SHA1 Message Date
b35d87a7ab feat(index): watermark stamps on every TS projection — adopt/catchup/rescan verdicts at load, stamp-after-data
Every persisted projection artifact (metadata field indexes + column
segments, HNSW node records, graph adjacency LSM trees) now carries a
stamp asserting 'this state reflects every committed generation ≤ W,
atomically' — written LAST in each owner's flush (stamp-after-data: a
crash between data and stamp = unstamped = rescan, never trust). At load,
each owner computes the three-way verdict: stamped==committed → adopt
(zero work) · behind → catchup (gap reported) · above/unstamped → RESCAN,
loudly. Legacy artifacts re-derive once, then are stamped forever. Shared
law in projectionWatermark.ts (the aggregation verdict machinery,
generalized); vector artifacts carry model dimensions. Verdicts are
computed and exposed (watermark()/watermarkVerdict()/watermarkGap());
rebuild triggers unchanged — acting on 'catchup' is the fold train.

Pins: 22 unit (7 metadata · 8 hnsw · 7 graph, incl. spy-order
stamp-after-data) + the end-to-end reopen-adopts pin.
2026-08-10 10:55:11 -07:00
2d532684b4 feat(plugin): every provider write surface carries the real committed generation
The provider contract (metadata addToIndex/removeFromIndex, vector
addItem/removeItem, id-mapper getOrAssign/remove) gains an optional
trailing generation — evaluated lazily at operation execute time (the
graph surface's thunk pattern, generalized), threaded from all 17
construction sites: undefined during generation-0 bootstrap, the real
committed generation everywhere else. Optional = additive: no existing
provider or caller breaks; native delta logs that stamped literal zero
start hearing truth. JS twins accept the parameter with parity notes.
Pins: provider doubles capture and assert nonzero monotonic generations
across add/update/remove on both surfaces.
2026-08-10 09:29:06 -07:00
287384cf1e feat(embedding): MT5 — deferred embedding with durable markers; write acks never wait on a neural net
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A3 of the service-class pair (BRAINY-PROD-LATENCY-TRIAD): a VFS file write
ran the embedder synchronously while the caller waited — 5.6s p50 / 21.4s
p95 per small file on a production deployment, the dominant stage of every
capture write.

- add()/update() gain deferEmbedding: the write acks at durability (data +
  metadata persisted, a DURABLE pending marker under
  _system/pending_embeds/<id> written BEFORE the commit — orphan-safe
  direction); the single-flight background worker embeds the CURRENT data
  and swaps the vector in ATOMICALLY (ReplaceInVectorIndex — the row is
  never absent from search; a deferred UPDATE keeps serving the OLD vector,
  stale-beats-absent per the flicker law). Typed refusals: defer+vector,
  defer-without-data.
- CRASH-SAFE: markers are recovered at open by a BOUNDED prefix listing
  (never a store walk) and the worker resumes in the background — a crash
  can delay a vector, never lose one. A wedged embedder trips a LOUD 60s
  hang guard and the worker moves on (marker retained for retry).
- The honest gauges: getIndexStatus().pendingEmbeds + pendingEmbedCount();
  awaitPendingEmbeds() is the eventual-vector-index BARRIER for callers
  and tests that need searchability before proceeding.
- VFS adopts it everywhere a write path could wait on the embedder:
  writeFile (both branches) and directory creation. Pinned in the
  strongest form: writeFile resolves while the embedder HANGS FOREVER.

Pins: deferred-embedding 5/5 (ack law · stale-beats-absent · crash
recovery across sessions · VFS hung-embedder ack · typed refusals).
Gates: unit 1928/1928 · integration 765 · conformance 27/27.
2026-08-05 16:26:43 -07:00
607b6b56f2 perf(sort): ordered reads never do per-row storage round-trips — the 199-317s production scan class dies structurally
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BRAINY-PROD-LATENCY-TRIAD Track A1 (David-approved plan): the sort path's
value resolution goes BATCHED — one chunked metadata-record batch pass
serves any N, replacing the serial per-row getNoun loop (62-98ms x 3,224
rows = the measured 199-317 second silent scan on self prod). The
metadata record carries every sortable value: system scalars EXACT
(bucketed-index precision loss can never force a per-row disk read
again) and the user bag via the shape-aware split, both record eras.

- resolveOrderValuesBatch: the one sanctioned value source for ordered
  reads (batch door: getNounMetadataBatch -> getMetadataBatch -> chunked
  parallel; never serial).
- Column top-K page re-sort and the no-column fallback both rewired.
- B2 down-payment: the no-column fallback ANNOUNCES itself once per
  field past 500 rows - silent degradation is illegal.
- THE CALL-SHAPE PIN (tests/unit/utils/metadataIndex-sort-callshape):
  zero vector-record reads, batch calls only, latency-blind so it holds
  on any machine - the serial loop cannot quietly return. Ordering
  contract re-pinned through the batch path (nulls last both directions,
  ties by id, never drop).

(! = perf contract change only; no API change. Gates: unit 1904/1904,
integration 758, conformance 27/27.)
2026-08-04 16:40:57 -07:00
24bf6cdbc5 feat(namespace): NO SPECIAL NAMES + storage fidelity — the ruled completion of the field-addressing law
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The write side of the law, ruled 2026-08-03: data is either in main space
where developers can use anything, or it is in system.*.

- The reserved-name write door DIES: add/update/relate/updateRelation
  metadata bags accept EVERY name (confidence, type, id, data, level,
  content, ...) as ordinary user fields — indexed, filterable, sortable,
  aggregatable, identical to any other field. The remap/enforce/warn
  machinery, the reservedFieldPolicy config (now a typed init refusal),
  and the compile-time metadata key bans are all removed. The one write
  refusal left: keys spelled 'system.*' (namespace forgery), now enforced
  on all four write doors.
- STORED RECORDS GO NESTED (v2): engine fields top-level, the user bag
  nested verbatim under 'metadata', sealed by a format stamp — by-name
  storage discrimination is unsound once colliders are admitted. Legacy
  flat records stay readable forever through the shape-aware splitters
  (sound for them: the old door refused colliders). Time travel rides the
  same split (generation store snapshots whole records).
- Name-based index exclusions DIE: user frame indexes every name; the
  excludeFields/indexedFields knobs and their silent-[] holes are gone;
  bulk-payload protection is value-shape only, uniform across names.
- Consumer-sweep findings fixed in the same wave: per-type counts read
  the frozen 'system.type' column (addToIndex sort, affinity tracking,
  cold-count rehydration, VFS type bitmaps — legacy 'noun' fallback for
  pre-rebuild reads); resolveHiddenIds addresses 'system.visibility'
  (bare 'visibility' was a silent no-op under the law — VFS/system
  entities leaked into default reads).
- Fidelity fallout fixed in the owning layers: readEntityFieldAddress
  reads the bag first (colliders were absent-shadowed by its own guard)
  and never serves system addresses from the bag; blob history refs read
  the bag shape-aware; migration transforms now receive ONE normalized
  view (engine fields + nested bag) regardless of stored era, and stray
  flat-habit keys refuse with the fix in the message.
- THE REOPEN-COLLIDER CONFORMANCE CASE (required before any RC counts as
  gates-green): all ten collider names + plumbing names written as user
  fields, verified verbatim + queryable across live reads, flush+reopen,
  a forced epoch rebuild, and asOf time travel; relation mirror; forgery
  refusals; legacy flat-record compat. 8/8 green.

Gates: unit 1901/1901 (exit 0) · integration 758 (exit 0) · conformance
27/27 (exit 0) · consumer test sweep migrated (10 files).
2026-08-03 16:59:32 -07:00
48a6130a50 feat(namespace): write-door forgery refusal (user metadata keys may never start 'system.') + refusal messages name both spellings in every branch (the non-colliding case marks system.<f> honestly as NOT valid) — cross-engine message pin alignment
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2026-08-03 16:07:27 -07:00
8e962dabda feat(namespace): conformance green 19/19 — data-aware did-you-mean on unindexed bare addresses, ordering contract on the column top-K path (never drop, nulls last, ties by id), shape-complete addressed reads (entity views AND raw storage shapes, shadow-proof both scopes), per-key source matching for dotted addresses; refusal classes unified under UnresolvableFieldError
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2026-08-03 16:01:02 -07:00
c2fb28a2f7 feat(namespace): egress guard + validation speak the law — whereMatcher's resolver reads system.* from the record and bare names from the metadata bag only (the bare-system switch is dead); validateFindParams refuses cursor/includeRelations/writeOnly typed (accepted-and-ignored dies as a class), validates order, and parses every orderBy address
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2026-08-03 15:51:14 -07:00
11c724bc86 feat(namespace): the index speaks the frozen keys — record-frame scalars index under literal 'system.<field>' (legacy 'noun' spelling folds into system.type; plumbing never indexed from a record frame), user fields stay bare in every shape; filter + sorted paths route every address through parseFieldAddress; storage fallbacks read the addressed side of the record
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2026-08-03 15:28:24 -07:00
56deb2e888 fix(namespace): the JS sorted fallback honors the ruled ordering contract — nulls last in BOTH directions (was nulls-first on desc) + deterministic id-ascending tie-break
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2026-08-03 14:05:26 -07:00
55b867c998 feat: warm contract (warm/warmOnOpen/provider warm hook), configurable transact budget floor, backend-neutral vector index op names
Three pieces addressing the cold-restart-write incident where a production
deployment's first writes after every restart (33-35s each on a cold page
cache) blew the op-count-scaled transact budget mid-batch: every write is
itself a multi-op transaction, so one cold operation consumed the whole
budget, the gate before the next operation tripped, and the write rolled
back atomically - refused, retried, and refused again until the page cache
warmed passively.

- The budget's start-gating contract is now explicit and pinned: it gates
  STARTING the next operation, never rolling back completed work for
  elapsed time (the shipped schedule since 8.7.0, now stated in contract
  JSDoc, guarded by code for operation 0, and enforced by regression
  tests). The 30s floor is configurable via transactionBudgetFloorMs for
  stores whose cold operations legitimately run long.
- New brain.warm() eagerly loads the vector index, metadata index, and
  graph adjacency so first operations after a cold restart run at
  steady-state cost. Returns a WarmReport with an honest per-surface
  outcome (warmed / probed / unavailable) - never reports a probe as a
  warm. warmOnOpen: true runs it during init(). New optional provider hook
  warm() on the vector and graph plugin contracts.
- Vector-index transaction op classes renamed from the backend-specific
  AddToHNSWOperation / RemoveFromHNSWOperation to backend-neutral
  AddToVectorIndexOperation / RemoveFromVectorIndexOperation, stamping the
  active backend into the emitted op-name string (AddToVectorIndex(js-hnsw)
  vs a native provider's own identity) so journals never misdirect an
  operator toward an index that isn't running.
2026-07-23 08:54:32 -07:00
945d92d29e fix: one field-resolution law across aggregation hooks, source.where, removeMany, and find() spellings
Four fixes from a consumer conformance report, one root disease — two
field-resolution regimes where there must be one:

- The delete/update aggregation hooks fed the engine a partial entity
  view (type/service/data/metadata only), so a reserved-field groupBy
  (subtype, visibility, ...) resolved to a nonexistent group on the way
  down: counts drifted upward forever after deletes, and updates moving
  an entity between reserved-field groups double-counted. The hooks now
  pass the full-fidelity view via entityForAggFromRawRecord (every
  reserved field top-level, mirroring the add path); the update sites
  pass the full get() view instead of a hand-rolled subset.
- Aggregation source.where resolved fields only against the custom
  metadata bag, so where on a reserved field silently matched nothing.
  The matcher now resolves each filtered field through
  resolveEntityField — the same single source of truth groupBy uses.
- removeMany() with no usable selector (bare array passed positionally,
  empty params, ids: []) resolved successfully having deleted nothing.
  All three now throw; the two legacy tests that pinned the silent
  no-op as 'graceful' now pin the refusal.
- find() where keys accept both spellings: a metadata.-prefixed key
  falls back to its flattened spelling when the prefixed one is not
  indexed (metadata is flattened at index time). A literal nested custom
  key named metadata still wins when indexed as spelled.

Five regression pins in aggregate-reserved-fields.test.ts (4 of 5 vary
red on the unfixed code).
2026-07-19 10:54:36 -07:00
16a73b8475 feat: OS-limit detection for pool-scale deployments
- New src/utils/osLimits.ts: reads RLIMIT_NOFILE (soft/hard, from
  /proc/self/limits) and vm.max_map_count at open — once per process,
  Linux-only, measurement-only — and warns loudly when either sits below the
  pool-scale floors (soft NOFILE < 65536, max_map_count < 262144), with the
  exact raise commands. On stock defaults the failure otherwise arrives as
  EMFILE or a failed mmap deep inside an index open, long after the cause
  stopped being visible. An unreadable limit produces NO warning — no
  measurement, no claim — so non-Linux platforms stay silent.
- Exported for ops doors: checkOsLimits() returns the full OsLimitsReport;
  floors exported as constants. Wired fire-and-forget in performInit after
  storage init; the check can never affect open.
- Unit tests pin the parser (incl. 'unlimited'), the floor thresholds, the
  null-never-warns rule, and the off-Linux silent path.
2026-07-17 17:51:54 -07:00
da55be7520 fix: aggregation state adoption on reopen + single-flight backfill + query-cap ratchet removal
- AggregationIndex: defineAggregate before init no longer forces a backfill.
  init reconciles instead of clobbering: the app definition wins, persisted
  state is adopted on hash match, a write landing pre-adoption forces an exact
  rescan, and a successful state load clears the backfill flag. New ready()
  settles every adoption decision before query paths consult backfill state.
- brainy: backfills are single-flight and batched. Concurrent queries share one
  store walk and every pending aggregate fills from that same walk; the old
  behavior let each concurrent query wipe the others' partial state and start
  its own full walk, so a store under steady aggregate traffic never converged.
  queryAggregate also waits for persisted definitions before deciding an
  aggregate does not exist.
- paramValidation: recordQuery is telemetry-only. The duration-based cap
  ratchet (x0.8 per recorded query while lifetime-average exceeded 1s, floored
  at 1000 - below the documented 10000 auto floor, reported under a stale
  basis label) is removed; the cap comes from its construction-time basis or
  explicit overrides alone.
- storage: __aggregation_* and singleton system keys (brainy:entityIdMapper)
  are recognized before the unknown-key warning fires; routing is unchanged.
- docs: find-limits cap-immutability note, aggregation reopen/adoption
  semantics, RELEASES.md 8.5.1 entry.
2026-07-17 09:20:09 -07:00
38b0041464 feat: generation fact log — after-image commit records, dual-written at every commit point
Every committed generation now also appends a FACT — an after-image
commit record (what each touched entity/relationship became, or a
body-less tombstone for a removal) — to an append-only, crc32c-framed
segment log under _generations/facts/. The before-image history and the
canonical tree remain authoritative; the fact log gives consumers ONE
sequential, self-verifying stream (index heals, incremental replays)
in place of a per-entity directory walk.

- Wire format: positional msgpack facts [generation, timestamp, ops,
  meta, blobHashes]; op = [kind u8, id bin16, record | nil tombstone];
  32-byte segment header (magic, formatVersion, firstGeneration,
  zeroed+verified reserved); length+crc32c frame per fact; zero-padded
  segment names so lexicographic order == generation order; JSON
  manifest with an atomic rename flip, manifest-first rotation.
- Commit protocol: facts append+fsync BEFORE the commit point inside
  the existing durability window, so a crash can only leave the log
  AHEAD of committed truth — open() truncates back (torn tails detected
  by CRC). Absent generation = never committed; a scan can never see an
  uncommitted fact. transact() facts are durable-on-return; single-op
  facts ride the group-commit flush exactly like buffered history. A
  fact-append failure fails the write, loudly — a silent gap would be a
  lie a later replay discovers.
- New public surface: brain.scanFacts() (sequential batches with heal
  telemetry: head/segments/approx up front, per-batch generation range
  + bytes + segment id, loud abort on gaps, summary cross-check) and
  brain.factSegmentPaths() (immutable sealed segments for zero-copy
  consumers; the mutable tail excluded). Exported types CommitFact,
  FactOp, FactScanBatch, FactScanHandle.
- Storage: optional binary raw-byte primitives (appendRawBytes,
  readRawBytes, writeRawBytes, rawByteSize) on StorageAdapter —
  feature-detected; filesystem + memory adapters implement them; an
  adapter without them hosts no fact log. Fact segments are byte-copied
  (never hard-linked) into snapshots. The _generations/facts/ namespace
  is registered as a protected family (rebuildable: false): no sweeper
  or GC may delete under it.
- New crc32c (Castagnoli) utility with RFC known-answer tests.
2026-07-15 10:49:02 -07:00
d0f69c731f fix: honest index readiness — no silently-empty queries on a cold index
Closes the "dishonest readiness proxy" anti-pattern (Pattern A): size()>0 /
isInitialized were treated as "this index serves queries", but a cold native
index can load its COUNT before its SERVING structure, so a query returned a
silent [] indistinguishable from "no such data". A shared assessIndexReadiness()
now reads only the provider's honest isReady() signal (never size()), applied at
every site:

- Vector: a one-shot verifyVectorLive() guard on the semantic/proximity search
  path (a pure semantic find({query}) has no filter, so nothing guarded it). It
  prefers isReady(), else a known-vector self-match probe; self-heals via rebuild
  or throws the new VectorIndexNotReadyError instead of a silent [].
- Graph: getVerbsBySource/ByTarget skip the fast path when the provider reports
  not-ready (falling to the canonical shard scan), plus a one-shot probe that
  self-heals a no-isReady provider whose adjacency did not cold-load.
- getIndexStatus(): folds in per-index honest `ready` (making `populated`
  honest) + rebuildFailed/rebuildError/degradedIds, so a readiness probe never
  200s a brain that is still warming up or degraded.

Unblocked by the native providers now reporting serving-truth (graph via
SSTable-residency readiness, vector via durableBaseLoadFailed). New export:
VectorIndexNotReadyError. getIndexStatus gains additive fields. No breaking API.
13 new tests; existing readiness guards green.
2026-07-13 13:17:56 -07:00
119087a75c fix: spine hardening pass 1 (part) — count symmetry, honest partial-load, flush durability, read-fault propagation
Write/index-spine hardening, first batch of Pass 1. Each fix restores an
invariant the surrounding code already intended; every one has a
fail-before/pass-after test.

- Pattern C, finding 5 (baseStorage): delete now decrements the user-facing
  scalar total symmetrically — deleteNounMetadata was decrementing only the
  per-type bucket, deleteVerbMetadata neither the bucket nor the scalar, so
  getNounCount()/getVerbCount() inflated permanently (the stale scalar wins
  pagination via Math.max and is persisted). Invariant now holds:
  scalar total === Σ per-type across add/update/delete and reopen.

- Pattern A, finding 3 (graph/lsm/LSMTree): a partial SSTable-load failure no
  longer publishes the manifest's full relationship count as healthy. Any
  per-SSTable load failure throws after the batch, which resets to honest-empty
  and lets the existing size()===0 self-heal rebuild run — size()/isHealthy()
  can no longer lie about a partial load.

- Pattern B, finding 6 (hnsw/hnswIndex): deferred flush() no longer clears
  dirty nodes whose connections failed to persist — failed nodes stay in the
  retry set, and flush() throws HnswFlushError instead of returning a lying
  node count. The immediate-mode first-noun saveHNSWSystem is un-swallowed, so
  addItem() rejects rather than returning an id for a rootless index.

- Pattern B, finding 11 (part — storage reads): new shared isAbsentError()
  helper (utils/errorClassification, ENOENT-only absence) applied to
  loadBinaryBlob and readObjectFromPath — a real IO fault (EIO/EACCES/EMFILE)
  now propagates loudly instead of masquerading as "absent", which had driven
  needless rebuilds / empty reads (loadBinaryBlob feeds the native provider).

Regression: 78 green across the 3 new suites + db-mvcc, generationStore,
temporal-vfs, rollback-trapdoor, restore-nondestructive. Full gate runs before
the Pass-1 release (David-gated). Remaining Pass 1: finding 11 getNoun/getVerb
legs, finding 4 (ColumnStore), finding 8 (pending-flush), finding 10 (degraded),
finding 7 (clear). Pattern A guards (1,2,9) as a follow-up release.
2026-07-13 08:50:07 -07:00
6821e1980b fix: validate where-operators and align the in-memory matcher to the documented set
`find({ where })` had two gaps that could silently return nothing. The in-memory
matcher (`matchesQuery`, used for egress re-validation and historical reads) was
missing several documented operators — `in`, `greaterThanOrEqual`,
`lessThanOrEqual` — so it disagreed with the index path, which does handle them.
And an unknown operator key (a typo, or `notIn` written where `not: { in }` was
meant) fell through to a nested-object-field interpretation and matched nothing.

- Align `matchesQuery` to the full documented operator set (add the missing
  aliases; the default branch now throws instead of treating an unknown key as a
  nested field — dotted paths remain the supported nested form).
- Validate the `where` filter up front (`validateWhereFilter`), throwing a typed
  `BrainyError('INVALID_QUERY')` that names the unknown operator, recursing into
  `allOf` / `anyOf` / `not`.
- Stop excluding a user field literally named `level` from the metadata index
  (it collided with an internal never-index key), so numeric/exact filters on it
  resolve instead of returning 0.

Adds unit coverage for the operator set and the throw-on-unknown behavior.
2026-07-07 12:23:36 -07:00
30eacbdfeb fix: no script shape can hang on brainy's internals — unref every maintenance timer + one-shot beforeExit
A consumer's clean-room verification of the 8.0.10 fix found relate() still
hanging their scripts. Root-causing the CLASS instead of the repro found two
mechanisms:

1. The 'beforeExit' auto-flush hook looped forever on any script that never
   reaches close(): Node re-emits beforeExit after every event-loop drain, and
   the async flush schedules new work — flush, drain, flush, forever. The
   listener now self-deregisters BEFORE its one flush, so the next drain exits.
   (Empirically: process.on('beforeExit', async () => await anything) alone
   never exits — this was the deepest root of the whole hang class.)

2. Every background-maintenance interval is now unref'd at creation — graph
   auto-flush, LSM compaction, metadata write-buffer flush, VFS cache
   maintenance, PathResolver cache maintenance, statistics debounce (the
   writer-lock heartbeat, flush watcher, and cache monitors already were).
   Durability is owned by close() and the beforeExit flush, both deterministic;
   a best-effort interval must never keep the host process alive.

Proof: the reported shape (add x2 + relate, filesystem) exits cleanly BOTH
with close() (~0.5 s) and with NO teardown at all — and in the no-teardown
case the beforeExit flush still lands the data (verified by reopen: both
nouns + the edge present). New per-op-class sweep test asserts no ref'd
timer survives close() for add / relate / graph find / metadata update /
vfs — turning this bug class off permanently instead of per-repro.
2026-07-02 17:26:22 -07:00
c540d63b69 fix: a bare script now exits cleanly after close() — release every process keep-alive
A consumer report on the GA pair: any minimal add/find/close script hangs
forever. Root cause was FOUR ref'd keep-alives brainy never released:

1+2. The global SIGTERM/SIGINT shutdown hooks (registered once at init) were
   anonymous and never removed — a process.on signal listener holds a ref'd
   signal handle. They are now named statics, deregistered when the LAST live
   instance closes (Brainy.instances also stopped leaking closed instances);
   a later init re-registers them.
3. UnifiedCache.startFairnessMonitor() created an interval it never stored,
   cleared, or unref'd — unclearable by construction. Now stored + unref'd
   (same posture as the existing memory-pressure timer): a cache monitor must
   never keep the host process alive.
4. brainy.close() never called VirtualFileSystem.close(), stranding the VFS
   background-maintenance interval and the PathResolver maintenance interval.
   close() now shuts the VFS down.

Proof: a bare script (init/add/close, no process.exit) exits 1 ms after
close() returns; before the fix it hung until killed. 3 new lifecycle tests
pin the hook semantics (once globally, survive while other instances live,
removed on last close, re-register after).
2026-07-02 16:39:16 -07:00
bf4a333f9b docs: rename the native provider to @soulcraft/cor across public docs and JSDoc
The 3.0 native engine ships as @soulcraft/cor (brainy 8.x <-> cor 3.x are a
version-matched pair); the old @soulcraft/cortex package stays on the 2.x/7.x
line. Public docs and .d.ts-visible comments now name the correct package.
Historical 2.x contract references (e.g. the 2.3.1 read-side fallback) keep
the old name deliberately.
2026-07-02 15:11:41 -07:00
ab53fa0893 docs(8.0): add module JSDoc to typeValidation.ts (the one file missing a module block) 2026-07-01 15:37:25 -07:00
b5bc73fb17 perf(8.0): allocation-free distance loops (6x cosine) — evidence-revised Fork X
Rewrite the four open-core distance functions (cosine / euclidean / manhattan /
dot-product) from object-accumulating `reduce` to single-pass allocation-free
indexed loops. cosine's per-element `{dotProduct,normA,normB}` object was the
hot-path GC lever.

MEASURED (tests/benchmarks/distance-microbench.mjs, dim=384, N=20000, median of
41): cosine 44.3ms -> 7.4ms (~6x), euclidean 9.2ms -> 6.6ms (~1.4x); the built
cosineDistance drops ~44ms -> ~9ms. Numerically identical (same ops, same order)
so recall is unchanged; full suite green (1753/1753).

Also drop the unfounded perf JSDoc ("faster than GPU", "Node.js 23.11+") and the
`new Function(distanceFn.toString())` eval in calculateDistancesBatch — with the
functions now tight loops, the batch is a thin JIT-inlined map (no worker, no
stringify/reconstruct).

Evidence-revised scope: the Float32Array resident-storage half of the original
Fork X is DROPPED. The same microbench shows Float32Array is ~1.7x SLOWER for
this compute (V8 widens f32 -> f64 on every element read), so it would regress
the hot path for a RAM win the open-core JS path does not need — billion-scale
vector RAM is the native provider's SIMD/mmap/quantized domain. The resident
representation stays number[]; no type-chain or cache changes.
2026-07-01 10:55:04 -07:00
ca9129a924 chore(8.0): modernize toolchain + position Bun as a runtime
Consumer-invisible modernization pass — no public API or runtime-behavior
change; dist for the override-only files is byte-identical.

Toolchain:
- CI: GitHub Actions matrix — Node 22/24 (test:unit) + Bun latest (test:bun).
- engines: node ">=22" (was "22.x"), bun ">=1.1.0".
- tsconfig: isolatedModules + noImplicitOverride; add the 33 `override`
  modifiers the flag requires across storage/integrations/vfs/transaction.
- deps: @types/node ^22; add prettier; drop dead standard-version,
  @rollup/plugin-* and the redundant embedded eslintConfig (flat
  eslint.config.js is the active config — verified identical lint output).

paramValidation: replace the top-level `await import('node:os'/'node:fs')`
with static ESM imports. The top-level-await form poisoned the module graph;
static imports also drop the browser/edge fallback branches no supported
runtime reaches (8.0 is Node/Bun/Deno-only).

Bun positioning: recommend Bun as a runtime (`bun add` / `bun run`), which is
green (test:bun 8/8). Drop single-binary `bun build --compile` as a target —
native addons cannot embed into it, and Bun 1.3.10 has a `--compile` codegen
regression around top-level await. Rename the Bun test to bun-runtime-test.ts
and correct docs that overclaimed single-binary support.

Gates: typecheck 0, build 0, test:unit 1743/1743, test:bun 8/8.
2026-07-01 09:16:46 -07:00
8b191224ce feat(8.0): wire the two cor-confirmed metadata-provider contract additions
Both shapes confirmed with cor for the lockstep (cor builds the native side
against these; the JS index is a no-op / unchanged):

- probeConsistency?(): Promise<boolean> — OPTIONAL O(1) cold-open consistency
  sampler on MetadataIndexProvider. brainy calls it ONCE per brain on the first
  read; on `false` it self-heals via detectAndRepairCorruption() — the metadata
  counterpart of the 7.33.2 graph cold-load guard, completing the phantom triad's
  detect-and-repair-on-open. Best-effort: a probe failure never breaks a read
  (the one-shot guard resets so a transient failure retries). The JS index omits
  the method, so it is simply never probed.

- getIdsForFilter(filter, opts?: { limit?; offset? }) — brainy passes a page
  bound on the UNSORTED find({ type, where, limit }) path so a native provider can
  early-stop and return only the [0, limit) prefix, killing the O(N) FFI marshal
  at billion scale (pairs with cor #75). brainy passes offset:0 and ALWAYS
  re-windows the result itself (visibility filter + slice); the JS index ignores
  opts and returns all matches (behaviour unchanged).

New unit tests cover brainy's call behaviour for both (probe→repair on false,
healthy→no-repair, failure-is-best-effort, once-per-brain; opts passed with
offset 0 on the unsorted path). Full gate green: unit 1718, integration 607.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-29 12:11:00 -07:00
5f974abc8a perf(8.0): negation/absence where-operators via roaring-bitmap difference
The JS metadata index served `ne`, `exists:false`, and `missing:true` by
materializing the ENTIRE id universe as an array of UUID strings, building a Set
of the excluded ids, and filtering — O(N) heap and two full passes on the
open-core path, on the most common shape (`deleted !== true`).

Compute the complement as a roaring-bitmap difference over the int-id universe
instead (`complementIds(excludeInts)` = universe \ exclude), converting only the
result back to UUIDs. The exclude set is small (the matching value), so this
avoids the full-corpus string materialization entirely. Behaviour is unchanged,
including the load-bearing soft-delete semantic that `field !== value` includes
entities with no such field. New focused tests pin `ne`/`exists:false`/
`missing:true`/`exists:true` result sets and that the complement reflects deletes.

Full gate green: unit 1520, integration 607.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-29 11:19:18 -07:00
ddcc0c723d refactor(8.0): remove the 4 deprecated query-operator aliases (clean break)
8.0 keeps the canonical operators (eq/ne/gt/gte/lt/lte) and their clean
long-form aliases (equals/notEquals/greaterThan/greaterThanOrEqual/lessThan/
lessThanOrEqual), and drops the four redundant deprecated spellings:
  is → eq,  isNot → ne,  greaterEqual → gte,  lessEqual → lte

Removed from every evaluator (metadataIndex criteria + range switches,
metadataFilter, the db whereMatcher egress path) and from the
BrainyFieldOperators type, the unsupported-operator error message, the docs
(QUERY_OPERATORS / api README / VFS projection + semantic guides), and the
whereMatcher alias tests. Also migrated Brainy's own internal use — the VFS
TemporalProjection queried with greaterEqual/lessEqual, which would have
silently broken — to gte/lte.

Full gate green: build, unit 1512, integration 607.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-29 10:29:20 -07:00
b9369f260b refactor(8.0): remove dead/deprecated code (legacy sweep)
- Deleted getIdsForFilterOld() — a 74-line "DEPRECATED old implementation"
  private method in the metadata index with no callers.
- Deleted getEdgesBySource/ByTarget/ByType from FileSystemStorage — three
  deprecated methods that only `console.warn` + `return []` (stub returns the
  repo forbids); not called anywhere and not required by any interface.
- Removed dead commented-out code fragments (an aspirational find() block in the
  NLP processor; a stale duplicate `const groups` line in the VFS generator).

Build + unit gate green.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-29 10:09:39 -07:00
47e8031124 fix(8.0): close GA-blocking correctness gaps from the readiness audit
- Version-coupling cold-init: getBrainyVersion() returned a stale build-time
  default ('3.14.0') on the FIRST synchronous call — the one loadPlugins() makes
  to build context.version — because the package.json read was async. A native
  provider declaring a realistic `>=8.0.0` range was therefore rejected on cold
  init. version.ts now reads package.json synchronously (8.0 targets Node-like
  runtimes only); added a cold-init coupling regression with a `^8.0.0` plugin.
- No-silent-failures on the highest-fan-in read path: getNouns()/getVerbs()
  converted a storage read failure into a success-shaped empty page, which the
  cold-start rebuild then read as "store empty" and skipped the rebuild — booting
  a permanently-empty index with no signal (the same silent-failure class as the
  phantom bug). Both now re-throw a named BrainyError; the rebuild path re-throws
  read failures (fail loud) and records a queryable degraded state, surfaced via
  checkHealth(), for non-fatal rebuild hiccups.
- LSM SSTable leak: graph compaction wrote a merged SSTable but only dropped the
  old ones from the manifest, orphaning their payloads forever ("In production
  we'd add a cleanup mechanism"). Added StorageAdapter.deleteMetadata() and now
  reclaim each compacted-away SSTable.
- Documented the two headline methods add() and find() (the only undocumented
  public methods on the class).

Full gate green: build, unit 1512, integration 607.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-29 10:03:38 -07:00
bf0afe8563 refactor(8.0): remove dead, unreachable, and unwired modules
Pre-GA dead-code sweep. A deterministic import-reachability walk from the
package's real entry points (the exports map, the CLI bin, the conversation
surface) found 34 source modules that nothing reachable imports — they
compile and ship as dist output that no consumer or internal path can ever
reach. All were superseded duplicates, abandoned parallel implementations,
or built-but-never-wired features:

  - superseded duplicates of live modules: an older "unified" entry, a
    standalone neural-import variant, a static NLP processor + its matcher,
    a parallel API-types module, a duplicate progress-types module
  - an abandoned import path (orchestrator + entity deduplicator + barrels)
    left behind when ingestion moved to the coordinator
  - unwired feature modules (instance pool, import presets, cached
    embeddings, relationship-confidence scorer) reachable only from tests
  - dead leaf utilities (write buffer, deleted-items index, bounded
    registry, two crypto shims, a cache manager, a structured logger, a
    stale v5 type-migration helper, a browser-only FS type shim) and
    several dead re-export barrels
  - a CLI catalog command wired into no command

Also removed two tests that only exercised deleted modules, repointed two
VFS tests off a deleted barrel onto the implementation module, and deleted
one example that demoed removed features.

Verified: clean build (both tsc passes), unit 1505 + integration 607 green,
and a re-run of the reachability walk reports zero remaining orphans.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-24 15:18:40 -07:00
450084b6ce perf(8.0): bound find({ where, orderBy }) sort to the page (CTX-BR-FIND-ORDERBY)
A filtered + ordered find() materialized the FULL sorted match set before slicing
the page — passing k = filteredIds.length to the column store's filteredSortTopK.
A broad filter + orderBy returning 20 rows at billion scale produced hundreds of
millions of sorted ids to discard all but the page (O(matches) heap).

Thread the page bound (offset + limit + the hidden-tier over-fetch) into
getSortedIdsForFilter → filteredSortTopK / sortTopK / the sparse-path slice, so
the sort produces only the page. Ordering and pagination are unchanged.

From cor's 2026-06-24 co-release scaling audit (item 1).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-23 15:01:49 -07:00
4d0b64f455 fix(8.0): restore() reloads a native entity-id mapper before graphIndex.rebuild()
A logical snapshot restore could silently lose graph edges on a brain backed by
a native provider: the graph adjacency keys on the shared id-mapper's interned
ints (sourceInt/targetInt), which are derived + never persisted, and restore()
never reloaded the mapper — so a native graph rebuild resolved verb endpoints
against a stale/empty mapper and dropped edges.

restore() now calls entityIdMapper.rebuild() — a new OPTIONAL method on the
EntityIdMapperProvider contract — BEFORE rebuilding the indexes, so a native
mapper reloads its int<->uuid from the restored binary KV first and the graph
resolves endpoints correctly. The JS mapper deliberately has NO rebuild() and
needs none: MetadataIndex.rebuild() re-derives it from the restored entities via
append-only getOrAssign, consistently with the bitmaps it builds — forcing a
reload there would blank a still-referenced mapping and break find() after a
same-instance restore.

Contract: graphIndex.rebuild() resolves sourceId/targetId -> ints through the
shared mapper itself (brainy does not re-feed resolved endpoints); brainy's only
job is to ensure the mapper is reloaded first.

Test: relationships survive a snapshot round-trip (db-mvcc.test.ts). 84
generation/temporal/visibility tests green; tsc clean.
2026-06-23 12:02:17 -07:00
a3d6fdb8b3 feat(8.0): GraphAccelerationProvider contract — the native graph-engine seam
Defines the optional native graph-acceleration provider (cor 3.0) that
brainy feature-detects and routes brain.graph.* / related({node}) /
find({connected}) to, falling back to pure-TS adjacency when absent. This is
the published seam cor wires its native build against (mirrors the existing
VersionedIndexProvider pattern: defined in plugin.ts, exported from index.ts,
implemented externally, feature-detected at runtime).

Contract (locked cross-team in the design thread):
- GraphAccelerationProvider: traverse, edgesForNode, graphCursorOpen/Next/Close,
  pageRank, connectedComponents, shortestPath, neighborhoodSample, topByDegree.
  Every read op is generation-aware (optional trailing generation?: bigint) so
  db.asOf(g).graph.* resolves historically; omitted = now.
- Subgraph: columnar wire format (BigInt64Array node/edge columns, Uint16Array
  edgeTypes, optional Uint8Array nodeDepth, truncated flag) — parallel typed
  arrays, never array-of-objects; brainy maps u64<->UUID lazily for rendered rows.
- OpaqueIdSet: a find() universe forwarded opaquely into traverse/search for the
  zero-crossing query->expand fusion (brainy never inspects it; the provider
  version-tags + validates the envelope).
- VectorIndexProvider.search gains allowedIds?: OpaqueIdSet | ReadonlySet<string>
  (predicate pushdown — recovers filtered recall lost to post-filtering).
- EntityIdMapperProvider gains entityIntsToUuids(BigInt64Array) — the bigint batch
  reverse resolver for Subgraph.nodes; implemented on the JS mapper (TS fallback).

All new public types exported from index.ts. Test: entityIntsToUuids round-trip
+ order-preservation + empty-int sentinel.
2026-06-21 08:12:22 -07:00
d02e522a3e feat(8.0): id-normalization (#18) + aggregation min/max delete-safety + RC-safe release
- id-normalization (#18): `brain.newId()` (UUID v7) + v7 default ids; non-UUID string ids are
  transparently normalized to a stable UUID v5 on creation AND every lookup — get/update/remove,
  relate(from,to), related, find({connected}), getMany, removeMany, the transact op-handler, and
  db.with() overlays — with the caller's original key preserved under `_originalId`. The engine only
  ever sees a UUID; real UUIDs pass through untouched. universal/uuid.ts gains v5/v7/isUUID +
  BRAINY_ID_NAMESPACE; new utils/idNormalization.ts (coerceNewEntityId / resolveEntityId).
- aggregation min/max delete-safety: `queryAggregate` no longer leaves a stale min/max after
  deleting the current extreme — min/max now track a value multiset and recompute in-memory (no
  entity scan; that scan was the prior delete-then-hang a consumer reported). Other metrics were
  already exact across deletes. Regression test proves resolve-after-delete + correct new min/max.
- release.sh RC-safe: explicit version arg, prerelease detection (npm `--tag rc` + GitHub
  `--prerelease`), full `test:ci` gate (unit + integration), current-branch push, npm-access
  verification after publish.
- native-engine references point at `@soulcraft/cor` (8.0's partner) in user-facing strings/docs.

Unit 1461/0 · integration 599/0 · tsc clean.
2026-06-20 14:46:40 -07:00
eccf42000b fix(8.0): multi-valued array fields index every element (contains no longer misses)
addToIndex builds a fieldsMap from the extracted {field,value} entries, but
only __words__ accumulated — every other repeated field did fieldsMap[field]=value,
so a multi-valued field (tags:['a','b','c'] → three 'tags' entries from
extractIndexableFields) collapsed to last-value-wins. columnStore.addEntity
expands an array to one indexed entry per element, but it only ever received the
final scalar, so `contains` matched only the last element and missed the rest.

Accumulate any repeated non-__words__ field into an array before addEntity
(promote scalar→array on the second occurrence). __words__ keeps its always-array
special-case so its multiValue manifest flag stays set even for single-word docs.

find-unified-integration.test.ts → 0 failures (was 4):
- 'array contains' (A.4): now queries first/middle/last element — all match
  (previously only the last-indexed element did).
- 'complete find workflow': $contains→contains (8.0 operator) AND fixed the test
  premise — find() hard-ANDs vector∩graph∩metadata, and connected:{from:X} returns
  X's NEIGHBOURS not X, so the graph anchor must be 'earth' (which the ML concept
  relates to), not the concept itself. Multi-signal scores are reciprocal-rank
  fusion (~1/61), not [0,1] cosine, so assert a positive fusion score, not >0.5.
- 'nonsense vector query': cosine search always returns nearest neighbours, so
  assert the structural array/bound contract, not length===0 (a Tier-2 concern).
- 'hard-ANDs signals': a nonexistent connected.from is an empty graph signal that
  zeros the intersection — assert length===0 (documented AND semantics), was >0.

1469 unit + full find-unified integration green.
2026-06-19 11:37:59 -07:00
009e50681e fix(8.0): column-store range queries honor exclusive bounds (lessThan/greaterThan)
getIdsForRange computed includeMin/includeMax correctly for every operator
(gt→false/true, lt→true/false, between→true/true) but DROPPED them when the
column store served the query — it called columnStore.rangeQuery(field,min,max)
with no flags, and the column-store path was inclusive-only. So whenever a field
lived in the column store, strict lessThan/greaterThan silently behaved as
lte/gte. The sparse-fallback path already forwarded the flags, so this was
column-store-only.

Thread includeMin/includeMax end to end:
- ColumnSegmentCursor: add textbook lowerBound/upperBound helpers and express
  binarySearchRange in terms of them. Inclusive/inclusive is byte-identical to
  the old impl (lowerBound(lo) == old binarySearchValue(lo).index; upperBound(hi)
  == old "first position after hi"). Exclusive lower advances past ALL duplicates
  of the boundary value; exclusive upper stops before them.
- ColumnStore.rangeQuery: accept the flags, apply them in the segment cursor AND
  the tail-buffer linear scan (strict > / < when exclusive). A bound taken from a
  segment's own min/max stays inclusive — it is a real stored value.
- VectorIndex/types interface + getIdsForRange call site updated.

Surfaced by brainy-complete dual-bound test (year/popularity exclusive both ends
→ ['Express','Vue.js']; React@95 and Angular@75 correctly excluded). Added 5
column-store unit tests: exclusive lower, exclusive upper, both, duplicate
boundary values, and the unflushed tail-buffer path. 1469 unit green.
2026-06-19 11:01:41 -07:00
d918f49287 fix(8.0): per-type counts rehydrate after cold reopen (column store, not dead sparse index)
lazyLoadCounts() read the `__sparse_index__noun` blob, but the sparse-index
WRITE path was removed in 7.20.0 — new workspaces persist the 'noun' field
ONLY to the column store. So on close()+reopen the sparse load found nothing
and left every per-type count at 0: counts.byType / byTypeEnum / topTypes /
allNounTypeCounts all read empty, while find() / getNounCount() (different
sources) stayed correct.

Rehydrate from the column store's 'noun' field instead. Its per-value
cardinality matches the warm updateTypeFieldAffinity counts exactly because
both are driven from the same addToIndex field set, in lockstep, with no
visibility gate on either — so syncTypeCountsToFixed (called right after in
init) reproduces the warm fixed-array values precisely. Legacy chunked sparse
index kept as a fallback for pre-7.20.0 workspaces.

Ground-truth verified: 12 Person + 5 Document → cold reopen now reports
person:12 / document:5 (was 0), topTypes [person, document, collection].

Tests: un-skipped the intentionally-failing phase1c "warm cache on init"
reopen test and strengthened it to exact persisted counts; added a warm==cold
element-for-element equality test. 1464 unit + count-sync/multi-process/
clear-persistence integration green.
2026-06-19 10:55:43 -07:00
5eaf579937 fix(8.0): real bugs surfaced by integration hardening — where-intersect, related() offset, relate() updatedAt
Three of the five bugs the rot pass surfaced (correct inputs → wrong output), fixed:

1. where-filter dropped all but the last operator on a field. getIdsForFilter()'s
   per-operator loop overwrote fieldResults each iteration, so
   { year: { greaterThan: 2009, lessThan: 2020 } } kept only lessThan. Now each
   operator's match set is AND-intersected (multi-operator-per-field works).
   (metadataIndex.ts)
2. related({ offset }) ignored the offset — getVerbs() zeroed it and smuggled it via
   an unimplemented cursor, so every page returned items [0, limit). Now the real
   offset is passed through to getVerbsWithPagination (which slices [offset,+limit)).
   (baseStorage.ts) — verified: get-relations-fix pagination test passes.
3. relate() never persisted updatedAt, so reads fabricated a fresh Date.now() each
   call (non-idempotent). Now createdAt and updatedAt share one timestamp at create.
   (brainy.ts) — verified: get-relations-fix equivalence test passes.

Follow-ups (precisely diagnosed, not papered over): exclusive range bounds —
ColumnStore.rangeQuery(field,min,max) is inclusive-only, so getIdsForRange() drops
includeMin/includeMax (metadataIndex.ts:996) and lessThan/greaterThan behave as
lte/gte when the column store is active (the dual-bound test's popularity:95 boundary
stays red); counts not rehydrating after restart; unscoped VFS path-cache.
2026-06-17 13:19:54 -07:00
f4dea80176 feat(8.0): visibility field (public/internal/system) on nouns + verbs
Adds a reserved, top-level `visibility` field (mirrors the subtype rollout):
'public' (default, surfaced) | 'internal' (developer app-internal — hidden from
default find/count/stats, opt-in via includeInternal) | 'system' (Brainy
plumbing, library-set only).

Fixes a real leak: the VFS root entity counted in getNounCount() and appeared in
find() (a fresh brain reported 1 entity). It is now visibility:'system' →
excluded from every user-facing surface. Developers also get a first-class
hidden-unless-asked tier (e.g. learned internals vs user-exposed data).

- Reserved (RESERVED_ENTITY_FIELDS / RESERVED_RELATION_FIELDS) — spoof-proof from metadata.
- Threaded through add/relate/update/transact; surfaced top-level on reads.
- Default exclusion in counts (baseStorage), find()/related() (hard candidate
  filter via excludeVisibility — keeps topK/limit correct), and stats;
  includeInternal/includeSystem opt-ins.
- VFS root marked 'system'.

Tests: visibility.test.ts 17/17 (fresh-brain getNounCount()===0, internal hidden
+ opt-in, verb symmetry, top-level surfacing, metadata-spoof rejection). Unit
1431 green; count-synchronization integration now passes (off-by-one fixed).
2026-06-16 15:20:26 -07:00
b26d3d42b3 fix(8.0): drive query-cap off MemAvailable + floor auto-detected caps
The auto-detected query-limit cap was computed from os.freemem() (MemFree),
which excludes reclaimable page cache. On hosts that memory-map large index
files the cache holding those pages dominates RAM, so MemFree collapses to a
sliver and the cap cratered to its floor on perfectly healthy machines,
rejecting legitimate find() calls.

- getAvailableMemory() now prefers /proc/meminfo MemAvailable (counts
  reclaimable cache), falling back to os.freemem() off-Linux, then a 2 GB
  constant where no OS module is available.
- Auto-detected caps (container + free-memory tiers) are floored at
  MIN_AUTO_QUERY_LIMIT (10_000); a transient low reading can never throttle
  queries to a near-useless ceiling. Consumer-supplied maxQueryLimit /
  reservedQueryMemory bypass the floor — an explicit caller knows their box.

Also scrubs two stale comments referencing the removed cloud storage
adapters and the retired mmap-vector backend: 8.0's native vector provider
persists its own .dkann file via getBinaryBlobPath, so the old rootDirectory
hook does not apply on this line.

Tests: memoryLimits 26/26 (4 new floor regressions), unit 1398/1398,
find-limits + db-mvcc + api-parameter-validation 37/37.
2026-06-16 09:01:45 -07:00
35b9d7ef43 refactor(8.0)!: remove orphaned zero-config subsystem + dead cloud/progressive-init storage vestige
The old config-generation subsystem (src/config/ + autoConfiguration.ts) was
superseded during the 8.0 rework and never wired into init(): it emitted settings
for a partitioning subsystem that no longer exists and probed deleted cloud env
vars. The live zero-config path is inline — recall preset → HNSW knobs, storage
auto-detect, auto persistMode, container-memory-aware cache sizing.

The storage progressive-init / cloud-detection cluster was equally dead after the
cloud adapters were dropped: isCloudStorage() is permanently false (no overriders),
scheduleBackgroundInit/runBackgroundInit were never called (the latter an empty
body), initMode was never assigned, and Brainy.isFullyInitialized()/
awaitBackgroundInit() were always-trivial with zero callers. scheduleCountPersist()
collapses to its only-ever-taken immediate write-through path.

Removed:
- src/config/{index,zeroConfig,storageAutoConfig,modelAutoConfig,sharedConfigManager}.ts
- src/utils/autoConfiguration.ts + the inert BrainyZeroConfig export
- Brainy.isFullyInitialized()/awaitBackgroundInit() (+ BrainyInterface decls)
- InitMode type, isCloudStorage/detectCloudEnvironment/resolveInitMode,
  scheduleBackgroundInit/runBackgroundInit/ensureValidatedForWrite and their state
- Dead cloud env-var probes (K_SERVICE/K_REVISION/AWS_LAMBDA_FUNCTION_NAME/
  FUNCTIONS_TARGET/AZURE_FUNCTIONS_ENVIRONMENT)

Kept (verified live): production-detection logging (environment.ts), container-
memory cache sizing (memoryDetection/paramValidation), on-disk hash bucketing
(sharding.ts).

Docs: scrubbed deleted-subsystem references (JS quantization knobs, cloud/OPFS
adapters, partitioning, old zero-config API) across 14 files; deleted two wholly-
obsolete feature docs (complete-feature-list, v3-features); rewrote
architecture/zero-config for 8.0.

~3,700 LOC removed. Build clean; 1392 unit + 24 db-mvcc green.
2026-06-15 11:11:21 -07:00
00d3203d68 refactor(8.0)!: remove distributed clustering subsystem — inert/orphaned, scale is single-process + native provider
The distributed-clustering subsystem never ran in production: it was inert,
orphaned dead code (faked consensus, stub replication, no live wiring, and it
did not interoperate with the 8.0 Db API). Brainy 8.0 is a single-process
library. Scale is single-process + the optional native provider
(@soulcraft/cortex, on-disk DiskANN to 10B+ vectors) + per-tenant pools +
horizontal read scaling (many reader processes, one writer).

Removed:
- src/distributed/ entirely (coordinator, shardManager, cacheSync,
  readWriteSeparation, queryPlanner, healthMonitor, configManager,
  hashPartitioner, shardMigration, domainDetector, storageDiscovery, http/network
  transports). ReaderMode/HybridMode relocated to src/storage/operationalModes.ts
  (slimmed to the live surface).
- src/types/distributedTypes.ts; config.distributed field + JSDoc;
  coreTypes distributedConfig; memoryStorage distributedConfig persistence.
- DistributedRole enum + src/config/distributedPresets.ts and the orphaned
  src/config/extensibleConfig.ts (config/augmentation registry built on removed
  cloud adapters + distributed presets), plus their src/index.ts re-exports.
- 13 BRAINY_* cluster env vars; the storage setDistributedComponents hook;
  enableDistributedSearch (dead config flag); the metadata partition field;
  the distributed_ reserved key prefix.
- Orphaned src/storage/readOnlyOptimizations.ts (zero importers).
- Tests targeting the subsystem: distributed-demo, distributed-cluster helper,
  distributed-transactions, sharding-transactions.
- Docs: EXTENDING_STORAGE.md (deleted); scrubbed distributed/cluster/Raft/
  shard-manager/multi-node prose from v3-features, enterprise-for-everyone,
  augmentations-actual, complete-feature-list, vfs/README, vfs/ROADMAP,
  vfs/VFS_CORE, capacity-planning, transactions, MIGRATION-V3-TO-V4,
  storage-architecture; reframed scale prose to the 8.0 model.

Kept: src/storage/sharding.ts (local-disk 256-bucket directory sharding via
getShardIdFromUuid — used live by baseStorage, unrelated to clustering);
the multi-process mode: 'reader' | 'writer' roles; semantic/HNSW clustering.

RELEASES.md: added a removed-surfaces row documenting the cut and the 8.0
scale model.
2026-06-15 10:37:39 -07:00
f8e0079d3f feat(8.0): zero-config finalize + cut JS quantization (config.vector = recall + persistMode) 2026-06-15 10:08:51 -07:00
1f7e365a4e chore(8.0): final pre-RC1 sweep — API consistency, named errors, orphans, zero-cast codebase 2026-06-11 14:51:00 -07:00
c44678390e feat(8.0): brain.fillSubtypes migration helper + pre-RC1 gap closure
- brain.fillSubtypes(rules): idempotent subtype back-fill for pre-8.0 data.
  One rule per NounType/VerbType (literal default or per-entry function);
  fills only entries still missing a subtype through the public update()/
  updateRelation() paths; returns { scanned, filled, skipped, errors, byType }.
  Full unit suite in tests/unit/brainy/fill-subtypes.test.ts.
- Fix getNouns/getVerbs pagination hasMore (peek one past the window) —
  was permanently false, silently truncating every multi-page walk.
- find({ near }) without near.id now throws a teaching error instead of an
  opaque storage sharding failure; CLI --threshold without --near applies a
  plain score floor.
- CLI init/close audit: every one-shot command init()s, close()s, and exits
  explicitly; delete the unmaintained interactive REPL; replace the cloud-era
  storage subcommands with status/batch-delete; new types/validate commands.
- requireSubtype JSDoc now documents the 8.0 default-on contract; audit()
  recommendation points at fillSubtypes.
- Docs: data-storage-architecture rewritten to the real 8.0 on-disk layout;
  README storage section reflects filesystem+memory and snapshots; eli5 and
  SEMANTIC_VFS /as-of/ semantics corrected; internal tracker IDs and
  .strategy references scrubbed from published files.
2026-06-11 10:53:55 -07:00
2427bb7960 feat(8.0): u64 BigInt graph provider contract — punch list a-d,g,h
GraphIndexProvider now speaks BigInt at the boundary (D.2 mirror):
- getNeighbors/getVerbIdsBySource/getVerbIdsByTarget take entity ints and
  return entity/verb ints as bigint[]
- new REQUIRED verbIntsToIds(bigint[]) batch reverse resolver (L.7
  identity-fingerprint design — verb ids are UUIDs by contract, so the
  provider-side interning is losslessly reversible)
- addVerb(verb, sourceInt, targetInt) returns the interned verb int;
  removeVerb(verbId) joins the contract

Coordinator (brainy.ts) owns ALL UUID <-> int conversion: getOrAssign on
writes, getInt on reads (unmapped UUID -> empty result without calling the
provider), getUuid / verbIntsToIds on returns, plus a bounded ~100k-entry
insertion-order warm cache for verb-int -> verb-id pairs fed by addVerb
returns and resolver results. GraphVerb gains derived sourceInt/targetInt
(populated at add time, never persisted). findConnectedSubtype gains a
native fast path that routes single-type single-subtype outgoing BFS
through the provider when available.

JS GraphAdjacencyIndex satisfies the contract while staying string/u32-keyed
internally: entity ints resolve through the shared entity-id mapper (threaded
in by the coordinator on init/fork/checkout), verb ints come from an
in-process append-only interning map re-derived from storage on
rebuild/cold-start. ColumnStoreProvider widens the same way: addEntity/
removeEntity take bigint, sortTopK/filteredSortTopK return bigint[].

relate() now rejects a caller-supplied id with a teaching error — verb ids
are brainy-generated UUIDs by contract in 8.0 (previously a passed id was
silently ignored). No Roaring64 provider-boundary decode site exists yet;
the JS-internal column store stays Roaring32 and the Treemap decoder lands
with the first consumer of provider-returned filter buffers.

Public brain API unchanged. 1413 tests green (+10 new BigInt contract tests).
2026-06-10 10:45:45 -07:00
42159f2bd7 chore(8.0): collapse dead defensive guards + redundant polyfills
Follow-up to the browser/cloud/threading sweep — everything that was guarding
against unreachable runtimes is now dead.

cacheManager.ts: Environment enum + this.environment field removed (only NODE
was reachable). StorageType narrowed to MEMORY + FILESYSTEM. navigator.deviceMemory
and performance.memory paths in detectOptimalCacheSize + detectAvailableMemory
deleted; node:os is the sole source. environmentConfig keeps the index signature
for future per-runtime tuning but only the node slot is wired.

Dead 'typeof window === undefined' guards (the check is always true on 8.0):
paramValidation, structuredLogger, mutex, brainy.ts stats block, and
networkTransport ws-dynamic-import all collapsed. IntegrationLoader's inverse
guard ('!== undefined' returning 'browser') deleted. mutex's createMutex default
type simplified from "(typeof window === 'undefined' ? 'file' : 'memory')" to
plain 'file'.

Redundant TextEncoder/TextDecoder polyfills: Node 22+ ships both as globals.
src/utils/textEncoding.ts deleted (applyTensorFlowPatch was named for a defunct
dep and only re-assigned globals already present). setup.ts collapsed to an
empty stable import target. unified.ts loses its applyTensorFlowPatch re-export.

modelAutoConfig.getModelPath() loses the unreachable trailing fallback now
that isNode() is effectively the only branch the function ever takes.

jsonProcessing.ts left unchanged — its 'typeof document' checks are value-shape
guards on the parsed JSON, not environment detection.
2026-06-09 16:46:16 -07:00
266715aeee chore(8.0)!: drop browser support, cloud SDKs, legacy pipeline, dead threading
Brainy 8.0 is server-only. This commit takes the consequences seriously and
removes everything that was only there to keep browser/cloud/threading
surfaces alive.

Browser support drop (per the @deprecated notes in environment.ts):
  - isBrowser, isWebWorker, areWebWorkersAvailable, navigator.deviceMemory
    paths, window/document/self.onmessage code.
  - browser console.log in unified.ts, the 'browser' branch in
    autoConfiguration.ts (env enum + scaleUp cases), 'browser-cache' model
    path, MCP service environment value.
  - package.json browser field.
  - src/worker.ts (Web Worker entrypoint) deleted.

Cloud SDK removal (the four adapters were dropped in Phase 7; the SDKs
were the lingering tax):
  - @aws-sdk/client-s3, @azure/identity, @azure/storage-blob, and
    @google-cloud/storage removed from package.json. Lockfile drops the
    entire @aws/@azure/@google-cloud/@smithy transitive tree.
  - EnhancedS3Clear class deleted from enhancedClearOperations.ts (the
    only @aws-sdk/client-s3 consumer; the dynamic import sites went with
    it). EnhancedFileSystemClear stays.
  - src/utils/adaptiveSocketManager.ts deleted entirely (474 LOC of HTTPS
    socket-pool management for the dropped cloud HTTP handler).
    performanceMonitor.ts no longer reports a socketConfig; socket
    utilization is fixed at 0.

Dead threading subsystem:
  - executeInThread was imported by distance.ts and hnswIndex.ts but
    never called. It was scaffolding for a future "off-main-thread
    distance batch" optimization that never shipped.
  - src/utils/workerUtils.ts deleted (Web Worker code path + an
    unreachable Node Worker Threads code path).
  - environment.ts loses isThreadingAvailable, isThreadingAvailableAsync,
    areWorkerThreadsAvailable, areWorkerThreadsAvailableSync. All exports
    purged from index.ts and unified.ts.
  - autoConfiguration.ts drops AutoConfigResult.threadingAvailable.

Legacy plugin/augmentation pipeline:
  - src/pipeline.ts deleted. The whole file was a no-op stub for
    backwards compat — Pipeline class had no methods, no lifecycle hooks,
    no before/after callbacks. AugmentationPipeline, augmentationPipeline,
    createPipeline, createStreamingPipeline, StreamlinedPipelineOptions,
    StreamlinedPipelineResult, StreamlinedExecutionMode were all aliases
    for the same stub.
  - src/mcp/mcpAugmentationToolset.ts deleted. executePipeline always
    threw "deprecated", isValidAugmentationType always returned false,
    getAvailableTools always returned []. Dead surface.
  - BrainyMCPService no longer instantiates a toolset. TOOL_EXECUTION
    requests now return the standard UNSUPPORTED_REQUEST_TYPE error.
    'availableTools' system-info returns [] (was the same in practice).

Net: 22 files changed, ~6400 LOC deleted (including legacy code +
mechanical lockfile churn). Build clean, 1409/1409 tests pass.
2026-06-09 16:38:30 -07:00
cb16a39a0c chore(8.0): Phase A + B — purge all @deprecated APIs + cacheManager dead branches
PHASE A — every @deprecated marker resolved (~25 removed)

src/coreTypes.ts
- GraphVerb: dropped the "@deprecated Will be replaced by HNSWVerbWithMetadata"
  note. GraphVerb IS the canonical contract — every public API path speaks
  it. Removed the `source` and `target` legacy alias fields (renamed `from`
  / `to` callers years ago; no consumers remain).
- StorageAdapter: dropped the "@deprecated Use getNouns() with filter" notes
  from `getNounsByNounType`, `getVerbsBySource`, `getVerbsByTarget`,
  `getVerbsByType`. They were never deprecated in spirit — they're useful
  non-paginated convenience wrappers over the paginated `getNouns()` /
  `getVerbs()` surface. Refreshed JSDoc to explain the role.

src/types/graphTypes.ts
- Mirrored the GraphVerb cleanup: dropped `source` + `target` legacy aliases.
  sourceId + targetId are the canonical fields.

src/import/ImportCoordinator.ts
- Deleted the entire DeprecatedImportOptions interface block (130 LOC). It
  was a v3 → v4 migration tool using the `?: never` trick to force
  compile errors on dropped options. Five major versions in, the
  forced-error gate is no longer pulling its weight.

src/triple/TripleIntelligence.ts
- Deleted `TripleIntelligenceEngine = any` alias. No consumers; superseded
  by `TripleIntelligenceSystem`.

src/storage/cow/binaryDataCodec.ts
- Deleted `wrapBinaryData()`. The COW dispatch layer in `baseStorage.ts`
  routes by key-prefix convention; the old guess-by-JSON-parse codec was
  fragile (compressed bytes can accidentally parse as JSON) and unused.

src/storage/baseStorage.ts
- Refreshed JSDoc on `convertHNSWVerbToGraphVerb()` — the method is alive
  and used internally; the deprecation note was stale.

src/embeddings/wasm/AssetLoader.ts → DELETED
- File was @deprecated since model weights moved into the Candle WASM
  bundle. No consumers. Removed from `embeddings/wasm/index.ts` exports.

src/embeddings/wasm/types.ts
- Dropped @deprecated tags on `TokenizerConfig` + `TokenizedInput` — still
  used by `WordPieceTokenizer` (auxiliary tokenization). Deleted
  `InferenceConfig` (truly dead). Updated `embeddings/wasm/index.ts`
  exports.

src/utils/metadataIndex.ts
- Deleted `getIdsForCriteria()` — pure alias for `getIdsForFilter()`, no
  consumers.

src/interfaces/IIndex.ts
- Removed RebuildOptions.lazy (deprecated and unused; lazy mode is auto-
  selected by available-memory detection).

src/hnsw/hnswIndex.ts
- Removed `getNouns()` (returned a full Map; deprecated in favor of
  pagination years ago and no consumers in src/ or tests/).

PHASE B — cacheManager dead StorageType branches

src/storage/cacheManager.ts
- Collapsed the `isRemoteStorage` flag and its 15 dead conditional branches
  spanning calculateOptimalCacheSize() and calculateOptimalBatchSize().
  After dropping cloud adapters in step 7, `coldStorageType` is never S3
  or REMOTE_API; the branches were dead. Cache sizing and batch sizing now
  honor the filesystem-only reality with simpler heuristics.
- Collapsed `detectWarmStorageType()` + `detectColdStorageType()` from
  ~40 LOC of environment-+-availability branching to 2-line returns of
  `StorageType.FILESYSTEM`. Brainy 8.0 ships filesystem + memory only.

NOT YET — Phases C-G in follow-up commits

C: storageAutoConfig.ts + zeroConfig + extensibleConfig + sharedConfigManager
D: TODO/FIXME sweep across src/
E: skipped tests + the parallel-test race condition
F: docs deep clean (BATCHING, augmentations, READMEs)
G: browser support drop (the last 2 @deprecated)

VERIFICATION

- npx tsc --noEmit: clean
- npm test: 1408 / 1409 (same pre-existing race-condition outstanding)
2026-06-09 15:33:56 -07:00
9f9a41599e chore(8.0): step-7 follow-through — collapse remaining cloud branches + docs sweep (scaffold step 13)
Final cleanup pass for Brainy 8.0. Catches three categories of debt:

A. STEP-7 FOLLOW-THROUGH (rebuild-path collapse)

Step 7's bisect-reset (debugging a flaky test) lost the in-source edits
to three rebuild paths even though the commit message claimed they
shipped. Re-applied now:

- src/utils/metadataIndex.ts — collapsed the `isLocalStorage` /
  cloud-pagination branching. Local-load-all-at-once is the only path
  in 8.0. Removed ~150 LOC of paginated-cloud branching for both nouns
  and verbs, plus the safety counters (`consecutiveEmptyBatches`,
  `MAX_ITERATIONS`, etc.).
- src/hnsw/hnswIndex.ts — same simplification for HNSW rebuild. The
  paginated cloud path is gone; HNSW now loads all nodes at once.
  Removed ~85 LOC.
- src/graph/graphAdjacencyIndex.ts — same simplification for graph
  adjacency rebuild. Removed ~50 LOC.

The collapse is safe because cloud adapters were deleted in step 7;
`storageType === 'OPFSStorage'` (and similar) can never match now.

B. CLOUD-ONLY DOCS DELETED

- docs/operations/cost-optimization-aws-s3.md
- docs/operations/cost-optimization-azure.md
- docs/operations/cost-optimization-cloudflare-r2.md
- docs/operations/cost-optimization-gcs.md
- docs/operations/cloud-run-filestore-guide.md

(docs/deployment/* contained no cloud-specific files that needed deletion.)

C. STORAGE-ADAPTERS GUIDE REWRITTEN FOR 8.0

docs/guides/storage-adapters.md → fresh content reflecting the 8.0
reality:
- Two adapters: FileSystemStorage + MemoryStorage. Quick-start matrix.
- Cloud backup section explains the operator-tooling pattern (gsutil /
  aws s3 / rclone / azcopy) with the exact commands consumers will run.
- "Why no cloud adapters in 8.0?" section documents the four reasons
  per BR-BRAINY-80-STORAGE-SIMPLIFY.
- Migration recipe for 7.x cloud-adapter consumers: mount local disk →
  filesystem storage → operator backup cron.

Updated frontmatter description so soulcraft.com/docs renders the
correct preview.

NOT IN THIS COMMIT (deliberate, lower-priority)

- src/storage/cacheManager.ts still references StorageType.S3 /
  REMOTE_API / OPFS as dead branches (23 sites). The branches are never
  reached in 8.0, but cleaning them would cascade through 5 consumers.
  Defer to a follow-up if the dead code surfaces as a real maintenance
  issue.
- src/config/storageAutoConfig.ts keeps its StorageType enum + autodetect
  for 7.x compat surface. Same reason: rewriting cascades through
  zeroConfig, extensibleConfig, sharedConfigManager. Defer.
- docs/MIGRATION-V3-TO-V4.md and docs/DEVELOPER_LEARNING_PATH.md still
  reference cloud adapters as historical artefacts. That's accurate —
  they describe how things used to be. Left as-is.
- @deprecated audit in src/ (10 files) deferred — audit each individually
  in a future polish pass.

VERIFICATION

- npx tsc --noEmit: clean
- npm test: 1408 / 1409 (same pre-existing race-condition outstanding from
  step 7; no regressions from this cleanup)
2026-06-09 15:05:02 -07:00