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40e7119b85 fix(reads): the readiness gate guards every index read surface — serving empty from a not-ready provider is unrepresentable
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A production store acked writes while readback served empty for fifteen
minutes. The brainy half: the lazy readiness gate had exactly one caller —
find() — while related() and every VFS path served straight from providers
that init had deferred (disableAutoRebuild on a large store). A false
health verdict from the accelerator pulled the trigger; the unguarded read
surfaces were the gun.

Every index read funnels through three helpers; the gate now lives at those
choke points, so any first read on a cold instance waits for the build and
then serves truth — the fast path after the latch is one boolean. The lazy
build's start is narrated through the production logger, never the
silent-suppressible console: fifteen silent minutes taught that line.

Pinned with the production shape: related() as the first-ever read on a
fresh lazy instance serves the relation; a filtered find serves the row.
2026-08-20 11:49:03 -07:00
ed7d1db97e fix(recovery): the fold streams and narrates; the checkpoint chain arms at the flip
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A production brain's first process boot after a live authority flip looked
hung and was restarted three times mid-recovery — three defects with one
scene. (1) THE FOLD MATERIALIZED THE LOG: peekFactsAbove(0) decoded every
fact into one array (GBs of after-images on a ~7k-fact log, a GC storm, a
starved write lane). The fold now STREAMS one segment-batch at a time —
memory is one segment at any log size — with structural ordering asserted
loudly. (2) THE FOLD WAS SILENT UNTIL DONE: minutes of boot work with zero
narration is what invited the restarts. It now announces itself BEFORE the
work ('do not restart, the fold is finite') and prints progress every
thousand facts. (3) THE CHAIN COULD ONLY ARM AT A CRASH: a live mid-session
flip left the fold checkpoint unfounded, so the brain's first unclean boot
paid a whole-log fold. Adoption now founds the checkpoint AT THE FLIP — one
paged full canonical barrier (bounded memory), then the stamp — so bounded
recovery holds from minute zero for every store that flips, at any size.

Pinned: a non-fresh flip stamps immediately; the first post-flip unclean
boot folds bounded (an unflushed at-ack fact above the checkpoint is
restored; a barrier-covered row below it is outside the fold). Kill matrix
and both adoption suites green alongside.
2026-08-18 12:53:50 -07:00
0991cf28e4 fix(locks): the fence keys ownership on pid+hostname — a same-process re-open never fences its predecessor
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The plant's integration lane caught it twice: the fence's startedAt-strict
comparison turned the documented same-process warn-and-take-over path (two
instances in one Node process — the server-restart test pattern, and the
shared-default-store pattern across test files) into a flush-killer: the
first instance's background flushes latched dead while its own process held
the lock ('PID N no longer holds the lock — it is now held by PID N').

Ownership is per-process: pid + hostname. startedAt stays in the lock for
observability but not in the fence — it protects nothing (a pid-recycled
successor's victim is a dead process that runs no fence checks) and it
convicted the innocent. Pinned: a same-process re-open leaves both
instances' flushes working; the cross-process eviction pins unchanged.

Verified under the lane's exact command: 102/102 files, 850 passed, exit 0.
2026-08-18 10:11:30 -07:00
314e0e6c29 test(budgets): iron-honest wall-clock budgets — 3x the worst honest-iron measurement
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Seven micro-budget tests were calibrated on one fast desktop and failed on
other honest iron with zero functional failures (bisect-proven pre-existing;
David-waived for 10.1/10.2 with this recalibration filed as the cure). Every
budget is now at least 3x the worst measurement observed across three
machines, each with a comment naming its calibration basis; the find-unified
micro-comparison of two sub-millisecond timings becomes a ratio assertion
(absolute equality of microsecond pairs can never be stable). The
inference-bound trim-history correctness test gets a timeout covering its
slowest observed run (174s) — its assertions are exact and untouched.

These remain order-of-magnitude guards; real perf enforcement lives in the
dedicated perf lanes with iron-specific budgets, per the gate-speed standard.

Known non-test artifact, documented not hidden: on slow-inference machines a
minutes-long awaited-embed loop can trip vitest's worker-RPC 60s tolerance
('Timeout calling onTaskUpdate') — all tests pass, vitest exits 1 on the
unhandled orchestration error. The CI lanes on faster iron exit clean; if a
lane ever trips it, the test moves to deterministic embeddings (its
assertions are size-bookkeeping, not embedding quality).
2026-08-18 09:36:21 -07:00
292e7c0406 fix(locks): live writers are never auto-evicted; evicted writers are fenced at every commit barrier
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The production dev-store split-brain (two live writers alternating a store's
id-mapper between two internally-consistent truths), cured at all three of
its roots. (1) STALENESS REQUIRES PID-DEATH: the old rule evicted on
heartbeat age alone, so a >60s event-loop stall (debugger pause, GC, heavy
sync work) handed the lock to a second opener while the first kept writing;
a live process is now never auto-evicted — a wedged-but-alive holder is the
operator's call via {force:true}, and the heartbeat stays for observability.
(2) THE CLAIM IS ATOMIC: writeFile(wx)'s open→write→close left an empty-file
window a concurrent opener could read as torn, unlink a LIVE claim, and take
the lock; the claim is now tmp-write + hard-link — the lock appears with its
full contents in one step. (3) THE FENCE: every flush commit and transact
barrier verifies lock ownership first (one small read per window) — a
forced-out or lock-deleted writer fails typed (BRAINY_WRITER_FENCED) before
a single staged byte or manifest advance, instead of writing on unaware.

Pinned: live-with-ancient-heartbeat refuses typed; dead-PID self-clears
narrated; a forced-out writer's flush and transact both fence, advancing
nothing. Requested by a downstream team as single-writer guard or loud
lockout — this is both.
2026-08-17 16:26:41 -07:00
9ac9e70686 feat(log): system commits carry their origin; the attested per-id reconcile door
Two consumer-driven cures sharing one stamp. (1) TX-LOG ORIGIN: engine-
originated commits stamp an optional origin on their tx-log entry AND the
commit fact's meta — 'system:embed-landing' (the deferred vector landing),
'system:adoption-backfill' (baseline re-commits), 'system:reconcile'. A
downstream activity feed showed a double tick because the landing commit was
indistinguishable from a user save, and the consumer rightly refused a
time-window collapse as a quiet loss; feeds now filter on fact. User writes
stay unstamped — absent origin is the user shape, every existing consumer
unchanged. (2) reconcileLogDivergence(id, {attest}): the human's door for
log-live-canonical-absent, the one class adoption refuses by design because
a lost-tombstone deletion is indistinguishable from canonical loss.
'deleted' mints the missing tombstone (history keeps the earlier live
record); 'restore' folds the log's only copy back into canonical; wrong-
class calls refuse typed with nothing written. Loud, narrated, single-row,
origin-stamped. From a production adoption's one surviving divergence.
2026-08-17 16:21:25 -07:00
a5a1883819 fix(adoption): the baseline backfill runs to completion — one call adopts a pre-log baseline of any size
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A production brain with a 12.7k-row pre-log baseline advanced exactly 800
rows per adoptLogAuthority() call (a five-pass ceiling × the oracle's
200-row listing cap), refused the flip, and sat tree-authoritative for
hours across restarts. The bound was sized for drift, never for a baseline.

Now: the adoption path runs the oracle uncapped so ONE scan yields the
ENTIRE curable set, every pass cures all of it, and the loop runs to
completion with the no-progress guard as its only stop. Pace rides the
write path (one full-brain scan amortizes over thousands of cures, not two
hundred): 1,000 drifted rows adopt green in one call in ~10s. Progress is
narrated for a live operator. The wire report keeps its 200-row cap.

Pinned: a baseline above the old ceiling adopts green in a single call.
2026-08-17 12:53:04 -07:00
9ca80667c3 fix(restore): a restore is an unclean event — the swap runs quiesced and the snapshot's durability stamps never survive it
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Two defects with one root, found by the fold-checkpoint work's first
integration gate. (1) THE RACE: restore() never quiesced the generation
store, so a background flush could write into _system/ while the swap was
removing it — observed as ENOTEMPTY mid-swap when a checkpoint stamp landed
between readdir and rmdir. The swap now runs inside the store's exclusive
section (runStateReplacement): flush timer disarmed, pending tier and
checkpoint accumulator discarded BEFORE any directory moves. (2) THE
INHERITED ASSERTION: a snapshot carries its source brain's clean-shutdown
marker and fold checkpoint, but the restored files were bulk-copied without
per-file fsync — the inherited stamps would suppress exactly the recovery
fold that cures a post-restore power cut. reopenAfterRestore now deletes
both stamps before reopening: the open treats the store as uncleanly shut,
folds the restored log into canonical, barrier-syncs what it re-applied,
and stamps fresh — the restored state is durably founded at restore time
instead of borrowing assertions about bytes this disk never synced.

Pinned: restore under in-flight traffic completes; the pre-restore stamp
does not survive; the post-restore stamp is the reopen fold's own, at the
restored watermark.
2026-08-13 09:19:14 -07:00
ff43de1ada feat(recovery): the fold-checkpoint bound — crash folds (checkpoint, head], never the whole log twice
The fold checkpoint (_system/fold-checkpoint.json) is stamped strictly after
a canonical-sync barrier over every live entity touched since the last stamp
(syncEntityCanonical: ids → canonical paths → fsync; an absent file fsyncs
its parent directory so deletes are as durable as writes). An unclean open
under log authority now folds only (checkpoint, head]; the chain bootstraps
at an empty brain's adoption (three-phase hooks around adoptLogAuthority) or
at a brain's first whole-log fold — existing brains converge at their first
crash with zero regression. Rollback restores sync immediately; abort paths
feed the barrier; a failed barrier retains the old bound (bigger fold later,
never a lost write). Five structural pins including boundedness itself.

Also: the production-shaped write-flow gate leg (mixed traffic racing
flushes, crash mid-traffic, every ack survives — from a consumer-reported
gate miss), and two release-ceremony cures (tag-first push so the publish
never queues behind the release commit's CI run; raw-curl npmjs shasum
probe with propagation grace instead of a one-shot false divergence).
2026-08-12 16:56:08 -07:00
cbe34d115e fix(log): pad-frame construction is total; the at-ack sync-failure compensation splits by phase — a production adoption's two write-path defects, cured at their roots
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An adopter's full suite found two v2 write-path defects on fresh brains,
reproduced with stacks; both cured and both pinned with their exact
production shapes:

1. PAD-FRAME CONSTRUCTIBILITY: a single msgpack bin filler steps its
   header by one byte at each size class (bin8→bin16→bin32), leaving one
   unreachable payload size per boundary — the sealer requested a
   291-byte pad, the encoder threw 'not constructible', and sync() died
   whole. Construction is now TOTAL: the class-boundary holes bridge with
   a trailing fixint beside the bin ({bin(n)} ∪ {bin(n)+fixint} covers
   every size ≥ minimum). Pinned exhaustively: every size from the
   minimum through a full sector plus boundary spill constructs
   byte-exact and decodes as reader-invisible filler.

2. THE NON-MONOTONIC REFUSAL LOOP: the append-failure compensation
   rewound the generation counter on ANY throw — including a covering
   SYNC failure after a SUCCESSFUL append. The log carried generation N
   while the counter re-minted N, and every later append refused
   'non-monotonic (N ≤ head N)' — the write path wedged in a refusal
   loop through deferred-embed retries and flush backoff. The
   compensation now splits by phase: an append failure (log never took
   the fact) fully compensates — un-buffer and rewind; a sync failure
   after append earns the rewind ONLY if the appended fact is provably
   dropped, otherwise the generation stays consumed and buffered — the
   counter never re-mints a number the log may carry. Pinned: an
   injected one-shot sync failure fails its write loudly and the very
   next write mints fresh and succeeds, with the log scanning strictly
   ascending end to end.

Also probed against the adopter's carried report: the 9.0 vfs.rename
stale-ghost shape does NOT reproduce on this head (old path cleanly
unresolvable on exists/stat/readdir after rename).

Gates: unit 2067/2067 (160 files) · integration 833 (97 files) ·
conformance 36/36.
2026-08-12 16:09:48 -07:00
25f0dd964e fix(adoption): the baseline backfill cures hydration-law drift — existing brains reach the crash-safe default with zero operator steps
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The last rung of the default-flip ruling: with the sentinel exemption in,
real production-shaped brains still refused adoption over state-differs
mismatches the backfill could not cure — rows written before the
hydration law carry denormalized wrapper fields that disagree with their
own metadata leg, and the previous as-is identity re-commit PRESERVED
that drift, so the oracle re-flagged it every pass and the flip never
happened. In practice the crash-safe default reached zero existing
brains: the exact outcome the hold ruling forbade.

The cure: the backfill now rewrites canonical in the LAW SHAPE — exactly
the wrapper the log's reconstruction produces (denormalized enumeration
fields derived from the metadata leg, which is their authority under the
field-addressing law; the embedding floats ride through byte-identical;
adjacency residue keeps its own rebuild path). The oracle then verifies
the rewrite before the flip — the same safety, no operator chore.
Log-ahead divergence classes (a log the witness denies) still refuse
loudly, exactly as before.

Classification note for the record: the flagged uuid-v7 rows postdate the
fact log's introduction, so they classify as state-differs (in-log,
drift-shaped) rather than pre-log — both classes ride the same backfill.

Pins: a manufactured depot-shape drifted wrapper adopts green with floats
preserved and metadata intact; log-ahead still refuses typed.
Gates: unit 2065/2065 · integration 832 · conformance 31/31.
2026-08-12 11:48:17 -07:00
2abe8b3806 fix(adoption): the reserved-root mint exemption — int 0 is legitimate for exactly one id
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The release-holding finding from the joint gate's six real depot brains:
the adoption path's positive-int mint check false-flagged the reserved
VFS-root sentinel (the all-zeros UUID, minted int 0 BY CONSTRUCTION at
genesis on existing brains) as a corrupt mint — so every existing brain
refused log-authority adoption and stayed on the old lossy-under-power-cut
durability, defeating the release's headline crash-safety exactly where
it matters most.

The exemption, at both mint seams (the host's minter thunk and the fact
log's encoder guard): int 0 is legal iff the id is the reserved root;
zero for ANY other id remains a corrupt-mint refusal naming the reserved
exception. The codec's u64 layer already tolerated 0 — only the guards
over-refused.

Pins: adoption goes green on a brain whose VFS root carries int 0 (the
depot-brain shape, previously refused) · a non-root zero still refuses
typed at the mint seam — held at the seam itself because a full write
SELF-HEALS a poisoned zero (the index cycle re-mints before the fact is
written, which is the correct outcome and was verified in the pinning).

Gates: unit 2065/2065 · integration 830 · conformance 31/31.
2026-08-12 08:55:12 -07:00
0e3facf4a8 fix(recovery): walks are healers — the typed/tolerant boundary redrawn where block-layer fault injection proved it belonged
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The quiet-loss cure regressed recovery: the new typed torn-record error
was correct at identity-read time but threw inside init-time recovery
walks, killing opens that previously survived. The boundary, redrawn:

- IDENTITY READS (get-by-id of a specific record, CAS blob point-get):
  typed TornRecordError, unchanged — a caller who asked for THAT record
  can act on the answer.
- SET-SHAPED READS AND WALKS (enumeration, pagination, batch hydration —
  the paths recovery rebuilds and finds page over): HEAL PAST the torn
  victim. The adapter's loud floor (error log + counted gauge) fires at
  the encounter; the walk serves the remaining rows. One crash casualty
  can no longer kill every query on its shard — or the open itself.
- WRITES OVER TORN RECORDS ARE THE CURE: the save path's read-merge, the
  commit path's before-image capture, and the operations' rollback
  captures all treat a torn prior as the create sentinel, narrated — the
  incoming bytes replace the unreadable ones, and history for the id
  honestly restarts at that generation. Corruption can never block its
  own heal.
- THE NaN SOURCE: torn mapper state (nextId/entries carrying garbage)
  discards with narration and re-derives via the existing rebuild path;
  the mint gains a source guard healing a non-integer counter from the
  live map. The reopen and first-write RangeError shapes are dead at the
  source, both authority branches.

Pinned with the exact fault-injection scenarios: a torn entity record
(including the VFS root) no longer kills the open — walks heal past it,
the keeper rows serve, and the identity read of the victim itself is
typed-or-healed; a torn mapper reopens and mints sanely on the first
post-recovery write.

Gates: tsc 0 · unit 2065/2065 · integration 828 · conformance 31/31.
2026-08-11 09:20:30 -07:00
214c98b4d5 feat(log): log authority is the fleet default — adopt-at-open, oracle-gated; plus the power-cut throw-site cures and the loud torn-record contract
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THE DEFAULT FLIP (ruled on proven evidence — at-ack survived 301/301
acked-writes-through-power-cut in block-layer fault injection; deferred
tree authority demonstrably loses flush-covered acks): a brain with NO
stored authority artifact now ADOPTS LOG AUTHORITY AT OPEN. The oracle
gates the flip exactly as the guarded adoption path always did — curable
divergences baseline-backfilled, the flip lands ONLY on a green verdict —
and a brain that cannot verify STAYS tree-authoritative loudly, with the
refusal recorded on the switch artifact so subsequent opens are cheap.
config logAuthority: 'defer' is the explicit documented opt-out (no
automatic adoption; declared flush-window loss; adoptLogAuthority() flips
later). A stored artifact always wins. RELEASES.md carries the posture.

Two standing .fails debt pins FLIP TO HOLDING under the default: the
at-ack crash-survival gap and the ack-at-log durability target — both now
permanent asserted truths, not aspirations.

POWER-CUT THROW SITES (fault-injection findings, brainy-alone config):
- A manifest-listed-but-unloadable column segment QUARANTINES at
  discovery (loud once, counted always, quarantinedSegments() exposed for
  the heal) and the field serves its remaining segments DEGRADED — never
  a raw throw killing every query on the field. Real storage faults still
  propagate untouched.
- Torn generation artifacts (NaN/garbage in manifest or counter) DISCARD
  with narration at the store's open and recovery re-derives — plus a
  defensive finite-integer guard at the init consumer. Never a RangeError
  killing an open.

THE LOUD TORN-RECORD CONTRACT: an existing-but-unparseable stored record
now surfaces as a typed, counted TornRecordError on every entity-read
surface (including fifteen previously-blind per-item batch catches);
ENOENT stays clean-absent; artifact readers with designed absent-recovery
keep null-tolerance behind the loud floor. Disk corruption can no longer
read as silent data invisibility.

Suite migration: the default's pins inverted deliberately, generation
baselines made relative, quarantine-contract pins rewritten to the ruled
behavior.

Gates: tsc 0 · unit 2065/2065 (159 files) · integration 826 (93 files) ·
conformance 31/31 · kill-matrix 15/15 · torn-open guards 2/2.
2026-08-11 08:37:38 -07:00
67c606be69 fix(durability): three block-layer power-loss findings from the first fault-injection box run — all cured, matrix 15/15
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An internal cross-engine fault-injection run (frozen-platter power-loss
capture) surfaced three release-gating findings; each cured in its owning
layer, each pinned:

1. WHOLE-LOG REPLAY ON UNCLEAN OPEN (the big one): log-authority replay
   only covered facts ABOVE the manifest — but live canonical entity
   writes are tmp+rename without per-file fsync, and the group-commit
   flush syncs staging + manifest, never the live tree. Power loss could
   therefore vaporize acked canonical bytes BELOW the manifest while the
   log held every fact scan-clean (measured: 299 of 301 acks lost).
   Now: a clean close stamps a clean-shutdown marker (fsynced, written
   last); every open consumes it; an UNCLEAN open under log authority
   folds the ENTIRE log into canonical — whole-entity after-images make
   the re-apply idempotent and byte-safe. Zero cost on the happy path;
   crash recovery pays one narrated fold. Recovery is replay: a crash is
   just bigger lag.

2. TORN WRITER LOCK: power loss legally leaves the lock file present but
   empty; the parse failure read as 'no holder' while the O_EXCL claim
   EEXISTed forever — a PERMANENT lockout no staleness check could clear.
   An unparseable lock is stale by definition (no live holder has one):
   unlink loudly and re-loop; a racer rewriting a valid lock first wins.

3. PAIR GUARD: flush() called metadataIndex.stampWatermark unguarded;
   a replacement metadata provider without the method killed the pair at
   first flush. All three stamp calls are optional-chained — a missing
   stamp is a verdict-side rescan, never a flush crash.

Pins: whole-log fold restores rows vanished below the manifest ·
clean-shutdown marker lifecycle (stamp/consume/re-stamp) · torn-lock
recovery with a fresh write after · stampless-provider flush.
Gates: unit 2055/2055 · integration 824 · kill-matrix 15/15.
2026-08-10 14:48:32 -07:00
d1651f986c feat(reprojection): the one doors-open machinery — budget-capped, yielding, foreground-preempted, atomic-swap; poison records quarantine typed
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The generic reprojection engine (pure TS; the twin of the native
implementation — same frozen contract, one shared conformance intent):
register any ProjectionAdapter; advance(family, {budgetMs}) folds facts
from the adapter's own watermark to the head in installments ≤50ms with
real macrotask yields; foreground door traffic bumps the DoorSignal and
an in-flight advance yields within one installment ('preempted');
advanceAll round-robins families fairly. swap(family, buildAdapter) is
the doors-open migration primitive: the OLD projection keeps serving
while the new one builds beside it, the flip is atomic at parity, and a
concurrent second swap refuses typed. A fact the fold cannot apply
(typed ProjectionApplyError) is QUARANTINED — skipped, ledgered,
narrated per-doubling, exposed for refuse-affected-reads — the service
class law's fourth answer: never a wedged rebuild, never a silent skip.
The engine never writes stamps: each adapter owns its durability and its
stamp-after-data discipline. Upgrade, heal, and rebuild are now the same
machinery behind open doors.

FactLogSource wires any host's fact scan in one line
(factSourceFromHost(brain)); window-contract violations are loud.

Pins: 23 unit (budget resume without refold · preemption within one
installment · round-robin fairness under a skewed backlog · build-beside
visibility mid-swap · atomic flip · single-flight refusal · quarantine
skip/ledger/doubling · non-typed throw aborts · losing adapter
discarded) + 3 integration on a real brain (fold matches ground truth ·
doors answer mid-fold with the preemption path exercised · crash
mid-fold resumes from the stamp, never refolds).

Gates: unit 2054/2054 (157 files) · integration 820 (93 files) ·
conformance 31/31.
2026-08-10 11:39:27 -07:00
b47787bbf7 feat(embedding): deferred-embed markers become log records — the sidecar recovery path is deleted
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The private recovery discipline, applied to its own machinery: pending-
embed markers stop being sidecar files and become first-class log records
riding the write's OWN commit fact — embed.pending lands in the same
atomic append as its after-image (a marker can never be orphaned from its
write, or vice versa; in durable-at-ack mode it shares the write's
covering fsync — zero extra syncs), and the worker's landing commit rides
embed.landed with the inline vector. Crash recovery is now a FOLD of the
log (pending without a matching landed = recovered), skipped wholesale on
brains with no v2 history; the one-time legacy bridge folds existing
sidecar files in, migrates them as one fact, and deletes them —
idempotent under a crash mid-bridge. No code path writes the sidecar
again.

Plus the ENTITY-TRUTH digest law, found by this train's own pins:
canonical vector wrappers denormalize HNSW residue (connections + the
randomly-assigned node level) that the log deliberately does not carry —
the verification oracle digested it and would have reported false
state-differs on ~any nonzero-level node (a ~15% flake in the cutover pin
was the symptom). Both sides of every oracle comparison now normalize to
entity truth (nounEntityTruth); index residue has its own rebuild path
and is not entity state.

Pins: embed-markers-in-log 5/5 (same-generation marker, landed+fold-to-
zero, crash recovery via the log with the sidecar prefix EMPTY on disk,
legacy bridge, VFS hung-embedder ack) · deferred-embedding 5/5 unchanged
(the contract outlived its mechanism) · kill-matrix 11/11 · cutover 5/5
×10 runs (flake dead) · unit 2031/2031.
2026-08-10 11:27:07 -07:00
b53e6e8987 feat(engine): the wiring wave — stamps ride every flush, provider generations, waitForIndexed, adopt-backfill, match-all serves
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- Watermark stamping fans out at flush: all three projections stamped
  with the committed generation before their flushes persist.
- waitForIndexed(path?, {generation, timeoutMs}) — the one honest read
  barrier for write-then-recall consumers; typed timeout error carries
  the pending count and names the gauge; getIndexStatus() gains
  per-projection gauges. awaitPendingEmbeds() unchanged underneath.
- adoptLogAuthority() self-backfills curable divergences (pre-log
  records, witness drift) by identity re-commit before flipping — a
  fresh brain flips clean; log-ahead divergences still refuse loudly.
- The verification oracle gains VERB legs (all four divergence classes;
  unwired = honest verbsChecked: 0, never a scope claim).
- find({where: {}}) match-all serves (was silent-empty, warm AND cold;
  same fix in count/streaming/subgraph seeding); removeMany({where:{}})
  refuses typed — a match-all bulk delete must be explicit.
- Aggregation native envelope stamped via noteSourceGeneration before
  serializeState; the native-blob restore gates through the same
  adoption verdict as caller-side state (the unconditional adopt dies).
- LC8 pinned: a wholesale directory move opens and serves identically
  across all three intelligences, with history traveling.

Gates: unit 2031/2031 (156 files) · integration 812 (91 files) ·
conformance 27/27.
2026-08-10 10:55:11 -07:00
b35d87a7ab feat(index): watermark stamps on every TS projection — adopt/catchup/rescan verdicts at load, stamp-after-data
Every persisted projection artifact (metadata field indexes + column
segments, HNSW node records, graph adjacency LSM trees) now carries a
stamp asserting 'this state reflects every committed generation ≤ W,
atomically' — written LAST in each owner's flush (stamp-after-data: a
crash between data and stamp = unstamped = rescan, never trust). At load,
each owner computes the three-way verdict: stamped==committed → adopt
(zero work) · behind → catchup (gap reported) · above/unstamped → RESCAN,
loudly. Legacy artifacts re-derive once, then are stamped forever. Shared
law in projectionWatermark.ts (the aggregation verdict machinery,
generalized); vector artifacts carry model dimensions. Verdicts are
computed and exposed (watermark()/watermarkVerdict()/watermarkGap());
rebuild triggers unchanged — acting on 'catchup' is the fold train.

Pins: 22 unit (7 metadata · 8 hnsw · 7 graph, incl. spy-order
stamp-after-data) + the end-to-end reopen-adopts pin.
2026-08-10 10:55:11 -07:00
26c6025158 feat(log): v2 is the LIVE write format — envelope records with minted ints, genesis, sector seals; v1 readable forever
The cutover: new tail segments write format v2 (per-record [type, version,
cipherFlag, keyId] envelope; noun/verb after-images carry dense ints
MINTED AT APPEND from the id mapper — a rebuilt mapper reproduces
assignments exactly; log.genesis opens every new log with the id-space
width + a minted brain id; sync() seals to the header-declared sector
boundary with reader-invisible pad frames). Existing v1 segments are
never rewritten — per-segment decoder dispatch reads both formats and v2
facts map to the exact CommitFact shape all consumers already read.
Cutover on a live v1 log: an empty v1 tail re-heads in place; a non-empty
one is sealed by rotation, byte-identical. Records reserve the encryption
fields (cipherFlag 0 / keyId nil are the only legal values; anything else
refuses typed naming the needed newer reader) — crypto-ready with no
future bump on the compat surface. Empty-records facts are legal (an
all-deduped batch is a real generation — v1 semantics preserved; the
refusal there tore a column-store flush mid-commit in the full suite, the
consistency guard caught it loudly, and the root is fixed).

Golden byte vectors pinned for the second (native) reader implementation.
Pins: cutover 5/5 · codec 54 · kill-matrix stays 11/11.
2026-08-10 10:55:11 -07:00
f7ca0d26de feat(temporal): as-of semantic recall joins the release contract — past vectors byte-exact, pinned
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The time-travel recall row moves from envelope-note to contracted: vector
search at a pinned past generation serves the vectors AS THEY STOOD —
a later re-embed never leaks into an earlier pin (byte-exact), tombstones
mask, the deferred-embed pin serves the stub on the vector leg until the
landing generation (text/metadata legs unaffected — triple intelligence by
design), and beyond-head pins refuse typed. Brainy-alone leg = the
documented ephemeral at-generation materialization; the at-scale leg rides
the accelerated provider's as-of index. Registry row added (shared ID
pending the master table).
2026-08-10 09:42:08 -07:00
13022c510b fix(log): acked writes survive power loss; rejected writes never silently commit — the kill-matrix goes 11/11 with zero .fails debt
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Two release-blocking findings from the durability kill-matrix, both fixed
in the owning layer:

1. LOG-AUTHORITY REPLAY AT OPEN: durable-at-ack fsynced the fact before
   the ack, but open() truncated every fact above the manifest — after a
   power loss that takes the un-fsynced tmp+rename canonical bytes, the
   acked write's ONLY durable copy was discarded. Now: under 'log'
   authority, open() REPLAYS intact facts above the manifest into
   canonical (FactLog.peekFactsAbove — CRC-gated, order-sorted) and
   advances the manifest to cover them; tree-authority brains keep the
   truncate contract they were promised. Pinned end to end: the power-loss
   row constructs the exact disk state (fsynced log, vanished canonical
   rename) and the acked write lives.

2. NO SILENT COMMIT: commitSingleOp buffered the generation BEFORE the
   fact append; an append failure (ENOSPC) rejected the caller but the
   next flush durably committed the generation with NO fact — a permanent
   silent log gap. Now the failure path un-buffers and returns the counter
   reservation: nothing commits, the log stays gap-free, and the canonical
   execute-residue orphan is the documented crash-equivalent.

Plus: the kill-matrix itself (11 rows — every commit-path fault point ×
reopen-as-crash recovery contract, at-ack variants, disk-full row; five
new zero-cost faultPoint sites), the log-authority pin suite (oracle
green/red/state-differs, flip refusal, switch survives reopen, 9/9), and
the group-commit covering pins (5/5).

Gates: unit 2002/2002 (152 files) · integration 785 · conformance 27/27.
2026-08-10 09:29:21 -07:00
287384cf1e feat(embedding): MT5 — deferred embedding with durable markers; write acks never wait on a neural net
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A3 of the service-class pair (BRAINY-PROD-LATENCY-TRIAD): a VFS file write
ran the embedder synchronously while the caller waited — 5.6s p50 / 21.4s
p95 per small file on a production deployment, the dominant stage of every
capture write.

- add()/update() gain deferEmbedding: the write acks at durability (data +
  metadata persisted, a DURABLE pending marker under
  _system/pending_embeds/<id> written BEFORE the commit — orphan-safe
  direction); the single-flight background worker embeds the CURRENT data
  and swaps the vector in ATOMICALLY (ReplaceInVectorIndex — the row is
  never absent from search; a deferred UPDATE keeps serving the OLD vector,
  stale-beats-absent per the flicker law). Typed refusals: defer+vector,
  defer-without-data.
- CRASH-SAFE: markers are recovered at open by a BOUNDED prefix listing
  (never a store walk) and the worker resumes in the background — a crash
  can delay a vector, never lose one. A wedged embedder trips a LOUD 60s
  hang guard and the worker moves on (marker retained for retry).
- The honest gauges: getIndexStatus().pendingEmbeds + pendingEmbedCount();
  awaitPendingEmbeds() is the eventual-vector-index BARRIER for callers
  and tests that need searchability before proceeding.
- VFS adopts it everywhere a write path could wait on the embedder:
  writeFile (both branches) and directory creation. Pinned in the
  strongest form: writeFile resolves while the embedder HANGS FOREVER.

Pins: deferred-embedding 5/5 (ack law · stale-beats-absent · crash
recovery across sessions · VFS hung-embedder ack · typed refusals).
Gates: unit 1928/1928 · integration 765 · conformance 27/27.
2026-08-05 16:26:43 -07:00
1dc861d299 fix(aggregation): the lifecycle cluster — flush stamps, behind-stamp catches up incrementally, the native rebuild finally gets invoked, deletes are never silently skipped
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SELF-ENGINE-LIFECYCLE-SPRINT + BRAINY-PROD-LATENCY-TRIAD, the four asks:

(a) brain.flush() persists aggregation state stamped at the committed
    generation. The stamp used to advance only at close(), so a long-lived
    writer that flushes but never closes — the primary production shape —
    left every write window behind the stamp, and ANY unclean exit forced a
    whole-store backfill walk (per-entity work, measured >60s and
    door-starving on a 9k-row production brain) on the first stats call.

(b) BEHIND-stamp adoption becomes adopt + INCREMENTAL CATCH-UP: the exact
    missing window (stamp, committed] resolves its affected-id set from the
    fact log and reconciles each entity with time-travel before/after reads
    (asOf at both window bounds) through the same delta algebra the live
    hooks use — cost bounded by writes since the last flush, never store
    size, and exact under interleaving because reconciliation targets the
    FIXED window end while later writes chain through hooks. Oversized
    windows (>5000 affected) and unreadable windows demote to the announced
    rescan — never a silent partial serve.

(c) The native provider's parallel rebuildAggregate — on the contract since
    8.x but never invoked anywhere — is now the backfill walk's preferred
    door: one call per aggregate with source-matched entities, replacing
    the per-entity FFI stream.

(d) A delete whose before-image is unavailable can no longer SKIP the
    aggregation hook silently (counts drifted upward forever): both delete
    paths (remove() and transact) flag an exact rescan, loudly.

Pins: integration (flush stamp; unclean-exit reopen → exact counts through
an add + group-move + delete window with the walk spy proving ZERO
whole-store walks) + unit (provider rebuild invoked once with filtered
entities; flagAllForRescan; reconcile delta algebra). Gates: unit 1913/1913
· integration 760 · conformance 27/27.
2026-08-05 15:49:12 -07:00
24bf6cdbc5 feat(namespace): NO SPECIAL NAMES + storage fidelity — the ruled completion of the field-addressing law
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The write side of the law, ruled 2026-08-03: data is either in main space
where developers can use anything, or it is in system.*.

- The reserved-name write door DIES: add/update/relate/updateRelation
  metadata bags accept EVERY name (confidence, type, id, data, level,
  content, ...) as ordinary user fields — indexed, filterable, sortable,
  aggregatable, identical to any other field. The remap/enforce/warn
  machinery, the reservedFieldPolicy config (now a typed init refusal),
  and the compile-time metadata key bans are all removed. The one write
  refusal left: keys spelled 'system.*' (namespace forgery), now enforced
  on all four write doors.
- STORED RECORDS GO NESTED (v2): engine fields top-level, the user bag
  nested verbatim under 'metadata', sealed by a format stamp — by-name
  storage discrimination is unsound once colliders are admitted. Legacy
  flat records stay readable forever through the shape-aware splitters
  (sound for them: the old door refused colliders). Time travel rides the
  same split (generation store snapshots whole records).
- Name-based index exclusions DIE: user frame indexes every name; the
  excludeFields/indexedFields knobs and their silent-[] holes are gone;
  bulk-payload protection is value-shape only, uniform across names.
- Consumer-sweep findings fixed in the same wave: per-type counts read
  the frozen 'system.type' column (addToIndex sort, affinity tracking,
  cold-count rehydration, VFS type bitmaps — legacy 'noun' fallback for
  pre-rebuild reads); resolveHiddenIds addresses 'system.visibility'
  (bare 'visibility' was a silent no-op under the law — VFS/system
  entities leaked into default reads).
- Fidelity fallout fixed in the owning layers: readEntityFieldAddress
  reads the bag first (colliders were absent-shadowed by its own guard)
  and never serves system addresses from the bag; blob history refs read
  the bag shape-aware; migration transforms now receive ONE normalized
  view (engine fields + nested bag) regardless of stored era, and stray
  flat-habit keys refuse with the fix in the message.
- THE REOPEN-COLLIDER CONFORMANCE CASE (required before any RC counts as
  gates-green): all ten collider names + plumbing names written as user
  fields, verified verbatim + queryable across live reads, flush+reopen,
  a forced epoch rebuild, and asOf time travel; relation mirror; forgery
  refusals; legacy flat-record compat. 8/8 green.

Gates: unit 1901/1901 (exit 0) · integration 758 (exit 0) · conformance
27/27 (exit 0) · consumer test sweep migrated (10 files).
2026-08-03 16:59:32 -07:00
7492b6cb59 feat(namespace): aggregation reads under the law + epoch 3 (the key-split rebuild) + THE ARMING COMMIT — the capability constant, the law module, and the typed refusals export from the package root; both engines' conformance suites light on this signal
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2026-08-03 15:53:13 -07:00
4679c89458 fix(namespace): noun-record updates preserve legacy inline HNSW adjacency — the placeholder-adjacency write stamped out pre-codec records' stored connections (crash-window unreachability); codec-era records were never at risk (empty field is the blob marker); pin covers the legacy shape
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2026-08-03 15:37:04 -07:00
1a09be0628 fix: user metadata named 'level' is a real field everywhere — the engine-internal node layer no longer shadows it in sort/filter/aggregation, and the indexing views stop stamping a phantom 0 into its column; index epoch 2 rebuilds existing brains at first open
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Also completes the v8.10.2 write-granularity law for the transact() plan
path: a metadata-only batch update never rewrites the vector-bearing noun
record (planUpdate staged the unconditional save the update() fix removed).
Seven pins in tests/integration/level-field-shadow.test.ts including the
reporting consumer's exact repro rows; orderBy JSDoc documents the ordering
contract and the announced field-addressing law.
2026-08-03 11:57:32 -07:00
cb717be275 fix: metadata-only update() never rewrites the noun record — the unconditional whole-vector save turned per-entity stat touches into full rewrites+fsync, amplifying read-heavy sweeps into disk saturation on a production deployment
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Also: idle PathResolver stats tick no longer logs NaN% every minute (logs
only on new traffic, via prodLog); graph-lsm-* key family recognized as
system resources (kills the per-boot unknown-key warning on provider-backed
brains). Four regression pins in tests/integration/update-write-granularity.
2026-07-29 10:42:50 -07:00
1201e25543 feat: two-tier history reads + the repacker + generationDigest — D1+D3 wired end-to-end
The packed tier goes live inside GenerationStore:

- Two-tier reads: getDelta / readBeforeImage / readGenerationRecords
  fall through live-tier → sealed segments (live-tier-wins: a crash
  mid-fold leaves a duplicate representation, never a gap). Cold-open
  seeds committedRanges from the segment manifest via interval merge —
  packed generations resolve without their directories existing.
- repackHistory({timeBudgetMs, batchGenerations}): folds cold
  generations (older than the newest 1024) oldest-first into sealed
  segments, deleting per-generation directories only after segment +
  manifest are durable. Public API + automatic time-bounded pass at
  close() (before compaction, so reclaim can drop whole segments);
  re-representation only — the sole history transform under the
  archival profile. Early stop = consistent prefix, next pass resumes.
- compact(): packed generations reclaim logically in the loop and
  physically at whole-segment boundaries via dropSegmentsBelow (the
  frozen partial-segments-wait rule).
- generationDigest(g) (D8): deterministic content digest through g —
  sealed-segment checksum chain + live-tier delta hashes; O(segments +
  live window); RangeError out of range, GenerationCompactedError
  below the horizon (a gate can never silently pin reclaimed history).

Four end-to-end pins: asOf answers byte-identical across fold + cold
reopen with folded dirs physically gone; repack+reclaim composition;
digest reopen-stability/divergence/loud-horizon; budget no-op+resume.
2026-07-19 16:26:10 -07:00
70e4bc8a79 fix: release drains in-flight writer-lock heartbeat — no phantom lock after unlink
clearInterval() stops future heartbeat ticks but not one already in
flight: a straggler tick past its ownership guards could land its
atomic lock rewrite AFTER releaseWriterLock()'s unlink, re-creating
the lock file as a phantom that blocks the next writer until the
stale TTL expires (~60s) — the pool-eviction reopen case. Found as an
ENOENT heartbeat warning during benchmark teardown; the quiet variant
is the harmful one.

releaseWriterLock() now awaits the in-flight tick (tracked per tick,
self-clearing) before reading/unlinking, so a straggler's write always
lands BEFORE the unlink and gets removed with everything else. The
heartbeat's ENOENT is also now benign-by-contract (lock or directory
removed under us — the next acquire recreates it); other errors stay
loud.

Pin: straggler-past-guards simulation — lock file absent after close,
directory immediately claimable (fails on the undrained code).
2026-07-19 12:52:24 -07:00
300d9f2a16 feat: flush() never compacts — history maintenance moves to close() with bounded passes
flush() is durability work: it must cost what the current window's
deltas cost, never what the history backlog costs. Under adaptive
retention the byte budget derives from free memory, so bulk-load
pressure shrank the budget exactly at peak write volume and flush paid
actual reclaim inline — a production deployment measured single writes
blocked 25-191s behind reclaim-on-flush.

- flush() no longer calls autoCompactHistory(); close() is THE
  auto-compaction site (already ran there; now alone).
- Every auto pass is time-bounded (CLOSE_COMPACTION_BUDGET_MS = 5s):
  reclamation is oldest-first, so an early stop is a consistent prefix
  and the next pass resumes. Explicit compactHistory() gains an
  optional timeBudgetMs for caller-chosen maintenance windows.
- Documented trade stated where operators read: a long-lived writer
  that never closes accumulates history until its next explicit
  compactHistory() — predictable writes, explicit maintenance.

Pins: flush-never-reclaims + close-reclaims-durably (db-mvcc), bounded
pass stops-then-resumes as a consistent prefix (generationStore unit).
2026-07-19 12:04:39 -07:00
945d92d29e fix: one field-resolution law across aggregation hooks, source.where, removeMany, and find() spellings
Four fixes from a consumer conformance report, one root disease — two
field-resolution regimes where there must be one:

- The delete/update aggregation hooks fed the engine a partial entity
  view (type/service/data/metadata only), so a reserved-field groupBy
  (subtype, visibility, ...) resolved to a nonexistent group on the way
  down: counts drifted upward forever after deletes, and updates moving
  an entity between reserved-field groups double-counted. The hooks now
  pass the full-fidelity view via entityForAggFromRawRecord (every
  reserved field top-level, mirroring the add path); the update sites
  pass the full get() view instead of a hand-rolled subset.
- Aggregation source.where resolved fields only against the custom
  metadata bag, so where on a reserved field silently matched nothing.
  The matcher now resolves each filtered field through
  resolveEntityField — the same single source of truth groupBy uses.
- removeMany() with no usable selector (bare array passed positionally,
  empty params, ids: []) resolved successfully having deleted nothing.
  All three now throw; the two legacy tests that pinned the silent
  no-op as 'graceful' now pin the refusal.
- find() where keys accept both spellings: a metadata.-prefixed key
  falls back to its flattened spelling when the prefixed one is not
  indexed (metadata is flattened at index time). A literal nested custom
  key named metadata still wins when indexed as spelled.

Five regression pins in aggregate-reserved-fields.test.ts (4 of 5 vary
red on the unfixed code).
2026-07-19 10:54:36 -07:00
4fcef7b8ed fix: import dedup off-switch honesty + brain-owned lifecycle for the background pass
The post-import background deduplication pass (a merge-DELETE writer,
debounced ~5 minutes after import) had four lifecycle defects:

- enableDeduplication: false did not gate the background schedule — an
  import that explicitly opted out could still have entities auto-removed
  minutes later. The flag now gates both the inline and background passes.
- Each import() constructed its own coordinator-owned deduplicator, so the
  debounce never spanned imports (N imports = N delete timers). The brain
  now owns a single lazy instance (getBackgroundDeduplicator).
- close() never cancelled pending dedup; a delete pass could fire against
  a closed brain. close() now cancels it first.
- The 5-minute timer held the process open (exit-hang class); now unref'd.

Four regression tests pin the contract (background-dedup-lifecycle);
import guides document that false disables both passes.
2026-07-18 10:40:45 -07:00
01a3b46ade fix: race-proof writer-lock acquisition + machine-readable conflict through init
- acquireWriterLock now CLAIMS with an atomic create-exclusive write (O_EXCL)
  inside a bounded retry loop: two processes racing an absent lock can never
  both succeed (the old read-then-tmp-rename flow let the loser keep running
  unlocked, silently). An EEXIST loser re-evaluates and either throws loudly
  with the winner's details or performs a verified stale-takeover (re-read
  before unlink so a lock that changed hands mid-deliberation is never
  clobbered). Exhausted contention fails loudly instead of degrading into a
  lockless open.
- BRAINY_WRITER_LOCKED passes through init() unwrapped: the error documents a
  machine-readable contract (err.code + err.lockInfo with the holder's
  pid/host/heartbeat), but init's blanket error wrapping stripped both,
  leaving consumers a message to regex against.
- Two contract tests added: stale-foreign takeover installs OUR lock via the
  atomic claim; the conflict error carries code + lockInfo at the public
  init() surface.
2026-07-17 17:11:46 -07:00
2a03fae0e2 feat: brain.auditGraph() — read-only graph-truth audit
- New public API: walks every canonical relationship record, queries the same
  read path applications use (related() with all visibility tiers included),
  and classifies every discrepancy into its failure family: missingFromReads
  (records the read path omits — stale adjacency), danglingEndpoints
  (endpoint entity gone — the partial-delete scar class), readOnlyVerbIds
  (read-path edges with no canonical record — ghosts). Design-hidden
  internal/system edges are counted separately so intentional hiding is never
  misclassified as loss. Counts exact; example lists capped with an explicit
  truncatedExamples flag; loud narration on incoherence; mutates nothing.
- Classification core lives in src/graph/graphAudit.ts behind injected seams
  (canonical walks + the end-to-end read) so the discrepancy logic is testable
  in isolation; brainy wires the seams to storage walks and related().
- getNounIdsWithPagination now refuses an undecodable resume cursor loudly —
  the third and final pagination walk brought under the 8.5.2 cursor contract.
- Types exported: GraphAuditReport, GraphAuditDiscrepancy. Docs: the
  inspection guide gains the audit -> repair -> audit verification ritual.
2026-07-17 16:34:45 -07:00
a77b064bd7 fix: exception-safe aggregation backfill + generation-verified adoption + loud open-path guards
- Aggregation backfill walks build into a STAGING map and swap in atomically
  on completion. A mid-walk failure drops the staging map — the previous live
  state keeps serving, the aggregate stays flagged pending, and the storage
  error surfaces to the failing query. Previously the walk wiped live state
  before a scan that could throw, never cleared the pending flag on failure,
  and re-ran a full walk on every subsequent query: a silent wipe/walk/throw
  loop at the caller's retry rate.
- Failed walks are latched: retries within a 30s cooldown rethrow the recorded
  error instantly instead of re-walking, so a tight caller-side retry loop
  costs one loud error per query, never a full store walk per query.
- Persisted aggregation state is stamped with the store's committed generation
  at flush; reopen adoption requires stamp equality. Stale state (unclean
  shutdown) or over-counting state (a log truncation on a copied store pulled
  the watermark back) triggers exactly one loud rescan, never a silent adopt.
- The backfill/adoption path narrates: adoption decisions, walk start/finish
  with counts and duration, and failures all log by default.
- getNouns/getVerbs refuse a supplied-but-undecodable pagination cursor with a
  loud error instead of silently restarting the walk at offset 0 (which
  re-served page 1 forever to any while(hasMore) caller).
- The graph cold-load verb walk aborts loudly on a missing or non-advancing
  cursor with hasMore=true.
- A versioned index provider whose generation is AHEAD of the committed
  watermark (torn copy / crash-recovery truncation) is now named loudly at
  open, alongside the existing behind-direction message.
2026-07-17 16:00:11 -07:00
da55be7520 fix: aggregation state adoption on reopen + single-flight backfill + query-cap ratchet removal
- AggregationIndex: defineAggregate before init no longer forces a backfill.
  init reconciles instead of clobbering: the app definition wins, persisted
  state is adopted on hash match, a write landing pre-adoption forces an exact
  rescan, and a successful state load clears the backfill flag. New ready()
  settles every adoption decision before query paths consult backfill state.
- brainy: backfills are single-flight and batched. Concurrent queries share one
  store walk and every pending aggregate fills from that same walk; the old
  behavior let each concurrent query wipe the others' partial state and start
  its own full walk, so a store under steady aggregate traffic never converged.
  queryAggregate also waits for persisted definitions before deciding an
  aggregate does not exist.
- paramValidation: recordQuery is telemetry-only. The duration-based cap
  ratchet (x0.8 per recorded query while lifetime-average exceeded 1s, floored
  at 1000 - below the documented 10000 auto floor, reported under a stale
  basis label) is removed; the cap comes from its construction-time basis or
  explicit overrides alone.
- storage: __aggregation_* and singleton system keys (brainy:entityIdMapper)
  are recognized before the unknown-key warning fires; routing is unchanged.
- docs: find-limits cap-immutability note, aggregation reopen/adoption
  semantics, RELEASES.md 8.5.1 entry.
2026-07-17 09:20:09 -07:00
d1ecee10f0 feat: committedGeneration capability + pinned durability/stability contracts
- storage.committedGeneration(): the committed watermark exposed on the
  fact-scan capability, so a provider compares its stamp's
  sourceGeneration against the store's truth without parsing the
  private manifest format (the capability source now carries both the
  live fact log and the committed closure).
- Pinned contract tests: fsync-before-ack (transact passes today; the
  single-op path is pinned via it.fails as the documented target —
  group commit must become LATENCY batching, ack waiting on the shared
  fsync, never durability skipping; the pin flips red when that lands
  so there is no cliff to discover) and scan-stability-under-rotation
  (a scan snapshot yields exactly its facts — no gaps, duplicates, or
  bleed-in — while segments rotate beneath it; the reclaim-during-scan
  variant lands with fact compaction, which does not exist yet).
- FactLog accepts a rotateBytes option so tests exercise real rotation.
2026-07-15 12:44:52 -07:00
352e356fd5 feat: provider access to the fact log + shared stamp verifier via internals
Three additive surfaces for native index providers, which hold only
`storage` and must never construct their own fact-log reader (the log's
open path is writer-side — it reconciles by truncating/rewriting):

- Fact-scan capability on the storage adapter (the getBinaryBlobPath
  pattern): the host brain wires a closure over its LIVE fact log at
  init; providers call storage.scanFacts()/factLogHeadGeneration()/
  factSegmentPaths() and fall back to the enumeration walk on null.
  Restore/reopen swaps the underlying log transparently.
- The family-stamp trio (readFamilyStamp/writeFamilyStamp/
  verifyFamilyStamp + types) exported from @soulcraft/brainy/internals,
  so 'one verifier' is literally one function shared with the native
  side, never two synchronized copies.
- Rollup invariants widened to number|string: content fingerprints
  (e.g. a per-tree SHA-256) are valid invariant values; strict equality
  either way, and a type mismatch reads as incoherence, never a pass.
2026-07-15 12:36:27 -07:00
2888ae6b40 feat: entity-tree family stamp — sourceGeneration + rollup coherence at open
The canonical entity tree now carries a FAMILY STAMP
(_system/family-stamps/entity-tree.json, JSON — forensics stay
terminal-readable): which committed generation the tree reflects
(sourceGeneration) plus the rollup invariants (entity/relationship
counts) that verify a millions-of-files projection whole where per-file
checks cannot scale. Written at flush/close boundaries; open-time
coherence is a COMPARISON, not a walk:

- coherent / absent (legacy store) → silent
- behind → benign for the tree (it is written BY the commit; only the
  stamp is stale after a crash between commit and flush) — refreshes at
  the next flush
- incoherent (counts diverged at equal generation, or a stamp AHEAD of
  the log head) → loud, names the failing invariant; repairIndex()'s
  unconditional recount heals and RE-STAMPS so repair leaves a coherent
  stamp behind
- a fault reading the stamp is UNVERIFIABLE — never conflated with
  absence

One verifier (verifyFamilyStamp, exported) reads both member modes:
enumerated (exact byte size per member, bounded families) and rollup
(invariants, unbounded families). New exports: readFamilyStamp,
verifyFamilyStamp, ENTITY_TREE_STAMP_PATH, FamilyStamp, StampMembers,
StampVerdict.
2026-07-15 10:54:20 -07:00
38b0041464 feat: generation fact log — after-image commit records, dual-written at every commit point
Every committed generation now also appends a FACT — an after-image
commit record (what each touched entity/relationship became, or a
body-less tombstone for a removal) — to an append-only, crc32c-framed
segment log under _generations/facts/. The before-image history and the
canonical tree remain authoritative; the fact log gives consumers ONE
sequential, self-verifying stream (index heals, incremental replays)
in place of a per-entity directory walk.

- Wire format: positional msgpack facts [generation, timestamp, ops,
  meta, blobHashes]; op = [kind u8, id bin16, record | nil tombstone];
  32-byte segment header (magic, formatVersion, firstGeneration,
  zeroed+verified reserved); length+crc32c frame per fact; zero-padded
  segment names so lexicographic order == generation order; JSON
  manifest with an atomic rename flip, manifest-first rotation.
- Commit protocol: facts append+fsync BEFORE the commit point inside
  the existing durability window, so a crash can only leave the log
  AHEAD of committed truth — open() truncates back (torn tails detected
  by CRC). Absent generation = never committed; a scan can never see an
  uncommitted fact. transact() facts are durable-on-return; single-op
  facts ride the group-commit flush exactly like buffered history. A
  fact-append failure fails the write, loudly — a silent gap would be a
  lie a later replay discovers.
- New public surface: brain.scanFacts() (sequential batches with heal
  telemetry: head/segments/approx up front, per-batch generation range
  + bytes + segment id, loud abort on gaps, summary cross-check) and
  brain.factSegmentPaths() (immutable sealed segments for zero-copy
  consumers; the mutable tail excluded). Exported types CommitFact,
  FactOp, FactScanBatch, FactScanHandle.
- Storage: optional binary raw-byte primitives (appendRawBytes,
  readRawBytes, writeRawBytes, rawByteSize) on StorageAdapter —
  feature-detected; filesystem + memory adapters implement them; an
  adapter without them hosts no fact log. Fact segments are byte-copied
  (never hard-linked) into snapshots. The _generations/facts/ namespace
  is registered as a protected family (rebuildable: false): no sweeper
  or GC may delete under it.
- New crc32c (Castagnoli) utility with RFC known-answer tests.
2026-07-15 10:49:02 -07:00
4fb41f9a7c test: lens-consistency regression — combined vs subtype-only vs canonical ground truth
Ports the fresh-brain probe that closed the type+subtype lens-drop
investigation into the permanent suite: a 7-pair corpus seeded through the
real write API (never restored bytes), every lens checked id-for-id against
an unfiltered canonical scan, warm AND after a cold reopen, plus the
type+subtype update-flip leg. Guards the under-inclusion class the egress
integrity guard structurally cannot catch.
2026-07-15 09:25:36 -07:00
af8c1795bd fix: VFS rename moves the containment edge — no ghost in the old directory
A cross-directory rename added the new parent's Contains edge but skipped
removing the old one (a 'not critical' shortcut), leaving the moved entity
a child of BOTH directories: readdir(oldDir) kept listing it, re-creating
the old path showed the name twice, and tree-walking consumers saw the
file in two places. Reported live by a production deployment (37 stale
containment ghosts; blocks tree-sync integrations).

- rename() now removes the old parent's vfs containment edge(s) by edge
  id resolved from the graph's own adjacency (the removal law: removal
  never requires reading the removed thing), and a move to the root gets
  its containment edge (previously skipped -> orphaned from readdir('/')).
- New vfs.repairContainment(): reconciles every VFS entity's containment
  edges against canonical metadata.path — removes stale/duplicate vfs
  edges, restores missing ones, never touches user knowledge edges. Wired
  into repairIndex() so the one operator ritual heals existing ghosts.
- Regression: tests/integration/vfs-rename-containment.test.ts (7).
2026-07-15 09:25:21 -07:00
2e2ba9c9aa fix: honest counters — removal never re-reads the removed record + repairIndex recounts and persists all rollups
Persisted entity totals inflated permanently: a delete's count decrement
was sourced from re-reading the record being removed, so a null read
(replace race, or a ghost left by a pre-8.3.1 partial delete) silently
skipped the decrement while the paired add had counted — and
Math.max(persistedTotal, scanned) meant no disk cleanup could ever
lower the reported total. Reported by a production deployment with a
write→delete→re-create repro minting drift within hours.

- The caller's pre-delete read now rides through the entire delete path
  (remove()/removeMany()/plan → DeleteNoun/DeleteVerb operations →
  deleteNoun/deleteVerb → deleteNounMetadata/deleteVerbMetadata): a
  null internal read falls back to the known prior record instead of
  skipping the decrement. StorageAdapter.deleteNoun/deleteVerb gain an
  optional priorMetadata parameter (additive).
- rebuildTypeCounts() rebuilt only the type-statistics arrays and
  computed the total just to LOG it — the persisted scalar
  (counts.json) survived every rebuild. One canonical walk now rebuilds
  every counter rollup (scalar totals + per-type maps + type
  statistics) and persists them; repairIndex() runs the recount
  unconditionally, since counters can be inflated over clean shelves.
2026-07-14 11:51:44 -07:00
366f9a91f5 fix: full-removal canonical deletes + family-scoped migration gate
Two production-reported spine fixes:

- Canonical delete is a FULL removal: remove()/removeMany() deleted the
  metadata leg but never the canonical vectors.json leg or the <id>/
  directory, leaving ghost rows that inflated enumerated counts forever,
  read as damage scars, and caused duplicate readdir entries for
  re-created VFS paths (the stale-unpost path). The delete operation now
  routes through storage.deleteNoun — both legs + the entity container —
  with a full two-leg before-image rollback; deleteVerb symmetric; the
  blind 'no metadata file' catch that masked real faults is gone. The
  generation log still holds the delete's before-image, so asOf() history
  is unchanged. repairIndex() gains a conservative, loud orphan-prune
  sweep (containers with no metadata content leg) + count recompute for
  stores damaged by earlier versions.

- Family-scoped migration gate: every read blocked on the whole-brain
  migration lock even when the migrating index was irrelevant. The gate
  now scopes to the index families a read actually consults — canonical
  reads never wait; find() waits only on its query shape's families;
  graph traversals wait only on the graph family. Writes keep the
  conservative whole-brain wait. A read that needs the migrating family
  still blocks (bounded) with the retryable MigrationInProgressError.
2026-07-14 10:11:53 -07:00
119087a75c fix: spine hardening pass 1 (part) — count symmetry, honest partial-load, flush durability, read-fault propagation
Write/index-spine hardening, first batch of Pass 1. Each fix restores an
invariant the surrounding code already intended; every one has a
fail-before/pass-after test.

- Pattern C, finding 5 (baseStorage): delete now decrements the user-facing
  scalar total symmetrically — deleteNounMetadata was decrementing only the
  per-type bucket, deleteVerbMetadata neither the bucket nor the scalar, so
  getNounCount()/getVerbCount() inflated permanently (the stale scalar wins
  pagination via Math.max and is persisted). Invariant now holds:
  scalar total === Σ per-type across add/update/delete and reopen.

- Pattern A, finding 3 (graph/lsm/LSMTree): a partial SSTable-load failure no
  longer publishes the manifest's full relationship count as healthy. Any
  per-SSTable load failure throws after the batch, which resets to honest-empty
  and lets the existing size()===0 self-heal rebuild run — size()/isHealthy()
  can no longer lie about a partial load.

- Pattern B, finding 6 (hnsw/hnswIndex): deferred flush() no longer clears
  dirty nodes whose connections failed to persist — failed nodes stay in the
  retry set, and flush() throws HnswFlushError instead of returning a lying
  node count. The immediate-mode first-noun saveHNSWSystem is un-swallowed, so
  addItem() rejects rather than returning an id for a rootless index.

- Pattern B, finding 11 (part — storage reads): new shared isAbsentError()
  helper (utils/errorClassification, ENOENT-only absence) applied to
  loadBinaryBlob and readObjectFromPath — a real IO fault (EIO/EACCES/EMFILE)
  now propagates loudly instead of masquerading as "absent", which had driven
  needless rebuilds / empty reads (loadBinaryBlob feeds the native provider).

Regression: 78 green across the 3 new suites + db-mvcc, generationStore,
temporal-vfs, rollback-trapdoor, restore-nondestructive. Full gate runs before
the Pass-1 release (David-gated). Remaining Pass 1: finding 11 getNoun/getVerb
legs, finding 4 (ColumnStore), finding 8 (pending-flush), finding 10 (degraded),
finding 7 (clear). Pattern A guards (1,2,9) as a follow-up release.
2026-07-13 08:50:07 -07:00
eb9c4eb963 test: pin the read-your-writes contract under the single writer
A returned write must be immediately readable by id, metadata filter, vector
search, and graph traversal — no await, delay, or retry between the write
returning and the read. This holds by construction because every projection
(canonical + HNSW + metadata index + graph index) commits inside the write's
transaction; the generation counter is the {seq} a caller can pin. The test
locks that guarantee so index maintenance can never quietly move off the commit
path (which would turn a returned write into a not-yet-queryable one).

First brainy chapter of the write/index-spine hardening program.
2026-07-12 18:24:31 -07:00
711d2f046a fix: honest response when a transaction rollback cannot complete
When a transaction failed and its rollback ALSO failed to undo a canonical
write (retries exhausted), the old path logged, continued, threw
TransactionRollbackError, and set state='rolled_back' — while the record it
could not undo stayed durable on disk. The caller got an error implying the
write was undone; a read-back showed the record. A failed rollback had no
truthful response (the post-commit response lie).

Give a failed rollback a two-branch honest contract, decided by observation:
both commit paths already hold byte-identical before-images, so after a failed
rollback the store compares current canonical state to them and classifies each
touched record as reconciled, an additive orphan (present when it should be
gone), or a restorative loss (gone/wrong when it should have been restored).

- Adopt-forward: a single-op write whose only damage is a durably-present
  orphan — the record the caller asked for — is committed forward (its
  generation buffered) and returns success with a loud warning that the derived
  index may be incomplete for that id until the next rebuild/repairIndex(). No
  error, no double-write; the record is durable and get-able immediately.
- Fail loud + quarantine: a multi-op batch, or ANY restorative loss, throws the
  new StoreInconsistentError naming every unreconciled record and its
  disposition, and puts the brain into write-quarantine (reads keep working,
  writes refused via assertWritable) until repairIndex() reconciles the derived
  indexes against canonical and lifts it. The counter is not advanced, and
  Transaction.rollback now reports state 'inconsistent' instead of the
  'rolled_back' lie when any undo failed.

New: StoreInconsistentError + UnreconciledRecord exported from the root;
repairIndex() forces a rebuild and clears the quarantine. Regression
tests/integration/rollback-trapdoor.test.ts injects index-add-throws +
canonical-delete-undo-fails and pins adopt-forward (durable, get-able, not
quarantined), fail-loud (StoreInconsistentError + quarantine + reads work +
repairIndex lifts it), and the error's record naming.
2026-07-12 12:19:09 -07:00
a2f4f6a550 fix: non-destructive, crash-resumable restore
restore() removed the entire live brain directory and then fs.cp'd the
snapshot in, so any copy failure left the store destroyed with only a partial
copy. The sharpest edge: fs.cp materialized the holes of sparse mmap blob
files, so a snapshot that fits on disk could balloon and ENOSPC mid-copy — the
recovery tool destroying the brain it was asked to recover.

Rewrite restoreFromDirectory as stage → verify → atomic swap:
- Copy the snapshot into a _restore_staging area BEFORE touching live data,
  sparse-aware (copyTreeSparse/copyFileSparse skip all-zero 4 MiB chunks, so a
  mostly-hole store restores at its true allocated size, not its apparent size).
- On any copy failure (ENOSPC included) remove only the half-written staging
  area and throw — the live store is left exactly as it was.
- Only after the copy succeeds, fsync a completion marker naming the staged
  entries, then swapStagedRestoreIn(): an idempotent per-entry
  rm-old + rename-staged-in (same-filesystem renames that cannot ENOSPC),
  removing stale live entries the snapshot lacks.
- completeInterruptedRestore(), wired into init() right after the root dir is
  ensured, finishes a crash mid-swap FORWARD (resume a committed swap) or
  discards an uncommitted staging area (live still authoritative).

_restore_staging is excluded from snapshots. persist() (hard-link snapshot)
was already safe and is unchanged; no public API change.

Regression (tests/integration/restore-nondestructive.test.ts): a forced copy
failure leaves live data fully intact and cleans staging; a normal restore
round-trips to the snapshot; an interrupted-but-committed restore completes on
reopen; an uncommitted staging area is discarded on open; the sparse copy is
byte-identical with allocated blocks far below apparent size.
2026-07-12 09:10:35 -07:00