test(hygiene): close every brain the remaining suites create

id-normalization.test.ts's makeBrain() and degraded-reads-surfaced.test.ts's
per-test brains had nothing tracking them — both now use a describe-scoped
opened[] array drained by afterEach.

find-hybrid-filter-before-hydrate.test.ts had two beforeAll-built brains
(one per describe block) with no matching afterAll.

multi-process-safety.test.ts and plugin-autodetect.test.ts/plugin.test.ts
left a brain whose init() was expected to reject (a rejected init() still
registers the instance in Brainy's global instance registry — the
constructor does that unconditionally — so it still needs close() to
deregister, or the process-level shutdown hooks never see the registry go
idle for the rest of the run).

tests/integration/find-hybrid-filter-before-hydrate.test.ts

@@ -31,7 +31,7 @@
  * never the legs. And the text leg is asked about the universe's ids only —
  * what it marshals is bounded by the universe, not by the store.
  */
-import { describe, it, expect, beforeAll, vi } from 'vitest'
+import { describe, it, expect, beforeAll, afterAll, vi } from 'vitest'
 import { Brainy } from '../../src/brainy'
 import { NounType, VerbType } from '../../src/types/graphTypes'
 import { rankIndicesByScore, reorderByIndices } from '../../src/utils/resultRanking'
@@ -287,6 +287,10 @@ describe('hybrid find: filter before hydrate — the answer is unchanged', () =>
     expect(typeof (brain as any).metadataIndex.getIdSetForFilter).not.toBe('function')
   })
 
+  afterAll(async () => {
+    await brain.close()
+  })
+
   it('the fixture does not truncate the text leg — the universe covers every text match', async () => {
     const index = (brain as any).metadataIndex
     const textMatches = await index.getIdsForTextQuery(QUERY)
@@ -553,6 +557,10 @@ describe('hybrid find: the text leg ranks inside the filter, not around it', ()
     }
   })
 
+  afterAll(async () => {
+    await brain.close()
+  })
+
   it('the old order let the filter consume the whole text leg', async () => {
     const index = (brain as any).metadataIndex
     const universe: string[] = await (brain as any).filterIdsBelted({ lane: 'alpha' })

tests/integration/id-normalization.test.ts

@@ -18,7 +18,7 @@
  * All entities carry explicit 384-dim vectors so no test invokes the embedder.
  */
 
-import { describe, it, expect } from 'vitest'
+import { describe, it, expect, afterEach } from 'vitest'
 import { Brainy } from '../../src/brainy.js'
 import { NounType, VerbType } from '../../src/types/graphTypes.js'
 import { v5, v7, isUUID } from '../../src/universal/uuid.js'
@@ -37,8 +37,15 @@ async function makeBrain(): Promise<Brainy> {
 }
 
 describe('id normalization — transparent string-key round-trips', () => {
+  const opened: Brainy[] = []
+
+  afterEach(async () => {
+    for (const b of opened.splice(0)) await b.close().catch(() => {})
+  })
+
   it('1. add() returns v5(key); get(key) and get(returnedId) both resolve; _originalId preserved', async () => {
     const brain = await makeBrain()
+    opened.push(brain)
 
     const returnedId = await brain.add({ id: 'user-1', vector: vec(1), type: NounType.Person })
 
@@ -60,6 +67,7 @@ describe('id normalization — transparent string-key round-trips', () => {
 
   it('2. relate() by string keys; related(key) and related({from:key}) return the edge to v5(toKey)', async () => {
     const brain = await makeBrain()
+    opened.push(brain)
 
     await brain.add({ id: 'user-1', vector: vec(1), type: NounType.Person })
     await brain.add({ id: 'doc-1', vector: vec(2), type: NounType.Document })
@@ -85,6 +93,7 @@ describe('id normalization — transparent string-key round-trips', () => {
 
   it('3. update() by string key reflects on get(key)', async () => {
     const brain = await makeBrain()
+    opened.push(brain)
 
     await brain.add({ id: 'user-1', vector: vec(1), type: NounType.Person, metadata: { role: 'admin' } })
     await brain.update({ id: 'user-1', metadata: { role: 'owner' } })
@@ -98,6 +107,7 @@ describe('id normalization — transparent string-key round-trips', () => {
 
   it('4. remove() by string key deletes; get(key) is null', async () => {
     const brain = await makeBrain()
+    opened.push(brain)
 
     await brain.add({ id: 'user-1', vector: vec(1), type: NounType.Person })
     expect(await brain.get('user-1')).not.toBeNull()
@@ -110,6 +120,7 @@ describe('id normalization — transparent string-key round-trips', () => {
 
   it('5. find({ connected: { from: key } }) resolves the anchor key', async () => {
     const brain = await makeBrain()
+    opened.push(brain)
 
     await brain.add({ id: 'user-1', vector: vec(1), type: NounType.Person })
     await brain.add({ id: 'doc-1', vector: vec(2), type: NounType.Document })
@@ -122,6 +133,7 @@ describe('id normalization — transparent string-key round-trips', () => {
 
   it('6. transact() add+relate by string keys round-trips with consistent canonical ids', async () => {
     const brain = await makeBrain()
+    opened.push(brain)
 
     // Seed user-1 so the relate op has a target to point at.
     await brain.add({ id: 'user-1', vector: vec(1), type: NounType.Person })
@@ -149,6 +161,7 @@ describe('id normalization — transparent string-key round-trips', () => {
 
   it('7. addMany() + relateMany() with string ids round-trip', async () => {
     const brain = await makeBrain()
+    opened.push(brain)
 
     const added = await brain.addMany({
       items: [
@@ -175,6 +188,7 @@ describe('id normalization — transparent string-key round-trips', () => {
 
   it('8. determinism: same key maps to same UUID — two adds upsert ONE entity, not two', async () => {
     const brain = await makeBrain()
+    opened.push(brain)
 
     const id1 = await brain.add({ id: 'user-1', vector: vec(1), type: NounType.Person, metadata: { n: 1 } })
     const id2 = await brain.add({ id: 'user-1', vector: vec(1), type: NounType.Person, metadata: { n: 2 } })
@@ -193,6 +207,7 @@ describe('id normalization — transparent string-key round-trips', () => {
 
   it('9. valid-UUID passthrough: a real UUID is kept verbatim with NO _originalId', async () => {
     const brain = await makeBrain()
+    opened.push(brain)
 
     const realUuid = v7()
     const returnedId = await brain.add({ id: realUuid, vector: vec(5), type: NounType.Thing })
@@ -207,6 +222,7 @@ describe('id normalization — transparent string-key round-trips', () => {
 
   it('10. no-id add() mints a v7; newId() mints a v7', async () => {
     const brain = await makeBrain()
+    opened.push(brain)
 
     const autoId = await brain.add({ vector: vec(6), type: NounType.Thing })
     expect(isUUID(autoId)).toBe(true)

tests/integration/multi-process-safety.test.ts

@@ -107,7 +107,11 @@ describe('Multi-process safety + read-only mode', () => {
 
       const blocked = new Brainy({ requireSubtype: false, storage: { type: 'filesystem', path: dir } })
       await expect(blocked.init()).rejects.toThrow(/another writer holds/i)
-      // Don't track `blocked` for afterEach cleanup since init failed.
+      // A rejected init() still registered `blocked` in Brainy's global
+      // instance registry (the constructor does that unconditionally) — close()
+      // is safe to call even though init() never completed, and is what
+      // deregisters it (and, once idle, the process-level shutdown hooks).
+      await blocked.close().catch(() => {})
     })
 
     it('takes over a STALE foreign lock (dead PID + old heartbeat) and claims atomically', async () => {
@@ -151,6 +155,7 @@ describe('Multi-process safety + read-only mode', () => {
       const err: any = await blocked.init().catch((e) => e)
       expect(err.code).toBe('BRAINY_WRITER_LOCKED')
       expect(err.lockInfo?.pid).toBe(otherPid)
+      await blocked.close().catch(() => {})
     })
 
     it('release drains an in-flight heartbeat — no phantom lock re-created after unlink', async () => {

tests/unit/brainy/degraded-reads-surfaced.test.ts

@@ -19,13 +19,19 @@ import { prodLog } from '../../../src/utils/logger.js'
 const UUID = (suffix: string): string => `00000000-0000-4000-8000-0000000000${suffix}`
 
 describe('Finding 10 — degraded derived-index state is surfaced on reads', () => {
+  const opened: Brainy[] = []
+
   beforeEach(() => {
     process.env.BRAINY_DETERMINISTIC_EMBEDDINGS = 'true'
   })
-  afterEach(() => vi.restoreAllMocks())
+  afterEach(async () => {
+    vi.restoreAllMocks()
+    for (const b of opened.splice(0)) await b.close().catch(() => {})
+  })
 
   it('checkHealth() reports adopt-forward degraded ids as unhealthy', async () => {
     const brain = new Brainy({ storage: { type: 'memory' }, dimensions: 384, requireSubtype: false })
+    opened.push(brain)
     await brain.init()
     ;(brain as any)._indexDegradedIds.add(UUID('de'))
 
@@ -37,6 +43,7 @@ describe('Finding 10 — degraded derived-index state is surfaced on reads', ()
   it('find()/get() warn loudly while degraded, ONCE, then repairIndex() clears it', async () => {
     const warn = vi.spyOn(prodLog, 'warn').mockImplementation(() => {})
     const brain = new Brainy({ storage: { type: 'memory' }, dimensions: 384, requireSubtype: false })
+    opened.push(brain)
     await brain.init()
     await brain.add({ id: UUID('a1'), data: 'x', type: NounType.Document })
     ;(brain as any)._indexRebuildFailed = new Error('rebuild boom')
@@ -59,6 +66,7 @@ describe('Finding 10 — degraded derived-index state is surfaced on reads', ()
 
   it('persistSingleOp records receipt.degraded (widened return type, not dropped)', async () => {
     const brain = new Brainy({ storage: { type: 'memory' }, dimensions: 384, requireSubtype: false })
+    opened.push(brain)
     await brain.init()
     // Simulate a degraded receipt by wrapping the generation store's commitSingleOp.
     const gs: any = (brain as any).generationStore

tests/unit/plugin-autodetect.test.ts

@@ -89,12 +89,14 @@ describe('Guarded plugin auto-detection (plugins: undefined)', () => {
     })
     const brain: any = new Brainy({ requireSubtype: false, storage: { type: 'memory' }, silent: true })
     await expect(brain.init()).rejects.toThrow(/installed but failed to load/)
+    await brain.close().catch(() => {})
   })
 
   it('installed but not a valid plugin (missing activate) → init() throws', async () => {
     stubImport(async () => ({ default: { name: '@soulcraft/cor' } })) // no activate()
     const brain: any = new Brainy({ requireSubtype: false, storage: { type: 'memory' }, silent: true })
     await expect(brain.init()).rejects.toThrow(/not a valid Brainy plugin/)
+    await brain.close().catch(() => {})
   })
 
   it('installed but activation fails → init() throws (activateAll posture applies)', async () => {
@@ -108,6 +110,7 @@ describe('Guarded plugin auto-detection (plugins: undefined)', () => {
     }))
     const brain: any = new Brainy({ requireSubtype: false, storage: { type: 'memory' }, silent: true })
     await expect(brain.init()).rejects.toThrow(/failed to activate/)
+    await brain.close().catch(() => {})
   })
 
   it('plugins: [] and plugins: false → no probe at all (explicit opt-out)', async () => {
@@ -132,5 +135,6 @@ describe('Guarded plugin auto-detection (plugins: undefined)', () => {
       silent: true
     })
     await expect(brain.init()).rejects.toThrow(/listed in config\.plugins but could not be loaded/)
+    await brain.close().catch(() => {})
   })
 })

tests/unit/plugin.test.ts

@@ -298,9 +298,10 @@ describe('Brainy plugin integration', () => {
     // must surface as a failed init(), NOT a silent degrade to the default
     // engine (the version-coupling guard; see plugin-version-coupling.test.ts).
     await expect(brain.init()).rejects.toThrow(/failed to activate|native module not found/)
+    await brain.close().catch(() => {})
   })
 
-  it('should use() return this for chaining', () => {
+  it('should use() return this for chaining', async () => {
     const plugin: BrainyPlugin = {
       name: 'chain-test',
       activate: async () => true
@@ -309,5 +310,8 @@ describe('Brainy plugin integration', () => {
     const brain = new Brainy({ requireSubtype: false, storage: { type: 'memory' } })
     const result = brain.use(plugin)
     expect(result).toBe(brain)
+    // Never init()'d — the constructor still registered it in Brainy's global
+    // instance registry, so it still needs a close() to deregister.
+    await brain.close().catch(() => {})
   })
 })