feat: COW always-on architecture + cloud storage clear() fix (v5.11.0)

Major architectural improvements and critical bug fixes:

## COW Always-On Architecture
- Removed cowEnabled flag from BaseStorage (COW cannot be disabled)
- Eliminated marker file system (checkClearMarker, createClearMarker)
- Simplified all code paths to assume COW is always enabled
- COW automatically re-initializes after clear() operations

## Critical Bug Fix: Cloud Storage clear()
- Fixed GCS clear() using correct paths (branches/ instead of entities/nouns/)
- Fixed S3Compatible clear() path structure
- Fixed R2 clear() implementation
- Fixed Azure, FileSystem, OPFS, Memory clear() COW flag handling
- clear() now deletes: branches/, _cow/, _system/
- Result: Cloud buckets can now be fully cleared (previously impossible)

## Container Memory Detection
- Auto-detect Docker/K8s/Cloud Run memory limits (cgroup v1/v2)
- Smart memory allocation (75% graph data, 25% query operations)
- Environment variable support (CLOUD_RUN_MEMORY, MEMORY_LIMIT)
- Production-grade containerized deployment support

## CommitLog streamHistory Feature
- Added streamable commit history with pagination
- Efficient memory usage for large commit histories
- Support for branch filtering and time ranges

## Comprehensive Storage Documentation
- Complete v5.11.0 file structure reference
- Detailed path construction algorithms
- 8 common storage scenarios with examples
- Type-first storage, sharding, COW architecture explained
- Public docs: docs/architecture/data-storage-architecture.md (1063 lines)

## Files Modified (14 files)
- All 8 storage adapters (GCS, S3, R2, Azure, FS, OPFS, Memory, Historical)
- BaseStorage core architecture
- CommitLog with streaming
- Brainy memory configuration
- Parameter validation with container detection
- Storage architecture documentation

## Breaking Changes
NONE - COW was already enabled by default. This removes the ability to disable it.

## Migration
No action required. Upgrade and clear() will work correctly on cloud storage.

## Impact
- Users can now clear cloud storage buckets completely
- No more corrupted buckets after clear() operations
- Container deployments automatically optimize memory allocation
- COW is mandatory and always enabled (safer, simpler)

v5.11.0 - Production ready

src/storage/adapters/r2Storage.ts

@@ -1032,30 +1032,30 @@ export class R2Storage extends BaseStorage {
 
     prodLog.info('🧹 R2: Clearing all data from bucket...')
 
-    // Clear all prefixes (v5.6.1: includes _cow/ for version control data)
-    // _cow/ stores all git-like versioning data (commits, trees, blobs, refs)
-    // Must be deleted to fully clear all data including version history
-    for (const prefix of [this.nounPrefix, this.verbPrefix, this.metadataPrefix, this.verbMetadataPrefix, this.systemPrefix, '_cow/']) {
-      const objects = await this.listObjectsUnderPath(prefix)
-
-      for (const key of objects) {
-        await this.deleteObjectFromPath(key)
-      }
+    // v5.11.0: Clear ALL data using correct paths
+    // Delete entire branches/ directory (includes ALL entities, ALL types, ALL VFS data, ALL forks)
+    const branchObjects = await this.listObjectsUnderPath('branches/')
+    for (const key of branchObjects) {
+      await this.deleteObjectFromPath(key)
     }
 
-    // CRITICAL: Reset COW state to prevent automatic reinitialization
-    // When COW data is cleared, we must also clear the COW managers
-    // Otherwise initializeCOW() will auto-recreate initial commit on next operation
+    // Delete COW version control data
+    const cowObjects = await this.listObjectsUnderPath('_cow/')
+    for (const key of cowObjects) {
+      await this.deleteObjectFromPath(key)
+    }
+
+    // Delete system metadata
+    const systemObjects = await this.listObjectsUnderPath('_system/')
+    for (const key of systemObjects) {
+      await this.deleteObjectFromPath(key)
+    }
+
+    // v5.11.0: Reset COW managers (but don't disable COW - it's always enabled)
+    // COW will re-initialize automatically on next use
     this.refManager = undefined
     this.blobStorage = undefined
     this.commitLog = undefined
-    this.cowEnabled = false
-
-    // v5.10.4: Create persistent marker object (CRITICAL FIX)
-    // Bug: cowEnabled = false only affects current instance, not future instances
-    // Fix: Create marker object that persists across instance restarts
-    // When new instance calls initializeCOW(), it checks for this marker
-    await this.createClearMarker()
 
     this.nounCacheManager.clear()
     this.verbCacheManager.clear()
@@ -1098,36 +1098,10 @@ export class R2Storage extends BaseStorage {
    * @returns true if marker object exists, false otherwise
    * @protected
    */
-  protected async checkClearMarker(): Promise<boolean> {
-    await this.ensureInitialized()
-
-    try {
-      const markerPath = `${this.systemPrefix}cow-disabled`
-      const data = await this.readObjectFromPath(markerPath)
-      return data !== null // Marker exists if we got any data
-    } catch (error) {
-      prodLog.warn('R2Storage.checkClearMarker: Error checking marker', error)
-      return false
-    }
-  }
-
   /**
-   * Create marker indicating COW has been explicitly disabled
-   * v5.10.4: Called by clear() to prevent COW reinitialization on new instances
-   * @protected
+   * v5.11.0: Removed checkClearMarker() and createClearMarker() methods
+   * COW is now always enabled - marker files are no longer used
    */
-  protected async createClearMarker(): Promise<void> {
-    await this.ensureInitialized()
-
-    try {
-      const markerPath = `${this.systemPrefix}cow-disabled`
-      // Create empty marker object
-      await this.writeObjectToPath(markerPath, '')
-    } catch (error) {
-      prodLog.error('R2Storage.createClearMarker: Failed to create marker object', error)
-      // Don't throw - marker creation failure shouldn't break clear()
-    }
-  }
 
   // v5.4.0: Removed getNounsWithPagination override - use BaseStorage's type-first implementation