brainy/src/brainy.ts
David Snelling a1a0576d04 feat: add import API validation and v4.x migration guide
Add comprehensive migration support for v4.x import API changes:

- Runtime validation that rejects deprecated v3.x options with clear errors
- Configurable error verbosity (detailed in dev, concise in prod)
- Complete migration guide (docs/guides/migrating-to-v4.md)
- Enhanced CHANGELOG with breaking changes documentation
- TypeScript type safety using 'never' types for deprecated options
- Comprehensive JSDoc with deprecation warnings and examples

Deprecated v3.x options now throw helpful errors:
- extractRelationships → enableRelationshipInference
- createFileStructure → vfsPath
- autoDetect → (removed - always enabled)
- excelSheets → (removed - all sheets processed)
- pdfExtractTables → (removed - always enabled)

Resolves Workshop team import issues where incorrect option names
disabled all intelligent features, causing generic entity creation.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-10-21 15:25:12 -07:00

3356 lines
No EOL
106 KiB
TypeScript

/**
* 🧠 Brainy 3.0 - The Future of Neural Databases
*
* Beautiful, Professional, Planet-Scale, Fun to Use
* NO STUBS, NO MOCKS, REAL IMPLEMENTATION
*/
import { v4 as uuidv4 } from './universal/uuid.js'
import { HNSWIndex } from './hnsw/hnswIndex.js'
import { HNSWIndexOptimized } from './hnsw/hnswIndexOptimized.js'
import { TypeAwareHNSWIndex } from './hnsw/typeAwareHNSWIndex.js'
import { createStorage } from './storage/storageFactory.js'
import { BaseStorage } from './storage/baseStorage.js'
import { StorageAdapter, Vector, DistanceFunction, EmbeddingFunction, GraphVerb } from './coreTypes.js'
import {
defaultEmbeddingFunction,
cosineDistance
} from './utils/index.js'
import { matchesMetadataFilter } from './utils/metadataFilter.js'
import { AugmentationRegistry, AugmentationContext } from './augmentations/brainyAugmentation.js'
import { createDefaultAugmentations } from './augmentations/defaultAugmentations.js'
import { ImprovedNeuralAPI } from './neural/improvedNeuralAPI.js'
import { NaturalLanguageProcessor } from './neural/naturalLanguageProcessor.js'
import { NeuralEntityExtractor, ExtractedEntity } from './neural/entityExtractor.js'
import { TripleIntelligenceSystem } from './triple/TripleIntelligenceSystem.js'
import { VirtualFileSystem } from './vfs/VirtualFileSystem.js'
import { MetadataIndexManager } from './utils/metadataIndex.js'
import { GraphAdjacencyIndex } from './graph/graphAdjacencyIndex.js'
import { createPipeline } from './streaming/pipeline.js'
import { configureLogger, LogLevel } from './utils/logger.js'
import {
DistributedCoordinator,
ShardManager,
CacheSync,
ReadWriteSeparation
} from './distributed/index.js'
import {
Entity,
Relation,
Result,
AddParams,
UpdateParams,
RelateParams,
FindParams,
SimilarParams,
GetRelationsParams,
AddManyParams,
DeleteManyParams,
RelateManyParams,
BatchResult,
BrainyConfig
} from './types/brainy.types.js'
import { NounType, VerbType } from './types/graphTypes.js'
import { BrainyInterface } from './types/brainyInterface.js'
/**
* The main Brainy class - Clean, Beautiful, Powerful
* REAL IMPLEMENTATION - No stubs, no mocks
*
* Implements BrainyInterface to ensure consistency across integrations
*/
export class Brainy<T = any> implements BrainyInterface<T> {
// Static shutdown hook tracking (global, not per-instance)
private static shutdownHooksRegisteredGlobally = false
private static instances: Brainy[] = []
// Core components
private index!: HNSWIndex | HNSWIndexOptimized | TypeAwareHNSWIndex
private storage!: BaseStorage
private metadataIndex!: MetadataIndexManager
private graphIndex!: GraphAdjacencyIndex
private embedder: EmbeddingFunction
private distance: DistanceFunction
private augmentationRegistry: AugmentationRegistry
private config: Required<BrainyConfig>
// Distributed components (optional)
private coordinator?: DistributedCoordinator
private shardManager?: ShardManager
private cacheSync?: CacheSync
private readWriteSeparation?: ReadWriteSeparation
// Silent mode state
private originalConsole?: {
log: typeof console.log
info: typeof console.info
warn: typeof console.warn
error: typeof console.error
}
// Sub-APIs (lazy-loaded)
private _neural?: ImprovedNeuralAPI
private _nlp?: NaturalLanguageProcessor
private _extractor?: NeuralEntityExtractor
private _tripleIntelligence?: TripleIntelligenceSystem
private _vfs?: VirtualFileSystem
// State
private initialized = false
private dimensions?: number
constructor(config?: BrainyConfig) {
// Normalize configuration with defaults
this.config = this.normalizeConfig(config)
// Setup core components
this.distance = cosineDistance
this.embedder = this.setupEmbedder()
this.augmentationRegistry = this.setupAugmentations()
// Setup distributed components if enabled
if (this.config.distributed?.enabled) {
this.setupDistributedComponents()
}
// Track this instance for shutdown hooks
Brainy.instances.push(this)
// Index and storage are initialized in init() because they may need each other
}
/**
* Initialize Brainy - MUST be called before use
* @param overrides Optional configuration overrides for init
*/
async init(overrides?: Partial<BrainyConfig & { dimensions?: number }>): Promise<void> {
if (this.initialized) {
return
}
// Apply any init-time configuration overrides
if (overrides) {
const { dimensions, ...configOverrides } = overrides
this.config = {
...this.config,
...configOverrides,
storage: { ...this.config.storage, ...configOverrides.storage },
model: { ...this.config.model, ...configOverrides.model },
index: { ...this.config.index, ...configOverrides.index },
augmentations: { ...this.config.augmentations, ...configOverrides.augmentations },
verbose: configOverrides.verbose ?? this.config.verbose,
silent: configOverrides.silent ?? this.config.silent
}
// Set dimensions if provided
if (dimensions) {
this.dimensions = dimensions
}
}
// Configure logging based on config options
if (this.config.silent) {
// Store original console methods for restoration
this.originalConsole = {
log: console.log,
info: console.info,
warn: console.warn,
error: console.error
}
// Override all console methods to completely silence output
console.log = () => {}
console.info = () => {}
console.warn = () => {}
console.error = () => {}
// Also configure logger for silent mode
configureLogger({ level: LogLevel.SILENT }) // Suppress all logs
} else if (this.config.verbose) {
configureLogger({ level: LogLevel.DEBUG }) // Enable verbose logging
}
try {
// Setup and initialize storage
this.storage = await this.setupStorage()
await this.storage.init()
// Setup index now that we have storage
this.index = this.setupIndex()
// Initialize core metadata index
this.metadataIndex = new MetadataIndexManager(this.storage)
await this.metadataIndex.init()
// Initialize core graph index
this.graphIndex = new GraphAdjacencyIndex(this.storage)
// Rebuild indexes if needed for existing data
await this.rebuildIndexesIfNeeded()
// Initialize augmentations
await this.augmentationRegistry.initializeAll({
brain: this,
storage: this.storage,
config: this.config,
log: (message: string, level = 'info') => {
// Simple logging for now
if (level === 'error') {
console.error(message)
} else if (level === 'warn') {
console.warn(message)
} else {
console.log(message)
}
}
})
// Connect distributed components to storage
await this.connectDistributedStorage()
// Warm up if configured
if (this.config.warmup) {
await this.warmup()
}
// Register shutdown hooks for graceful count flushing (once globally)
if (!Brainy.shutdownHooksRegisteredGlobally) {
this.registerShutdownHooks()
Brainy.shutdownHooksRegisteredGlobally = true
}
this.initialized = true
} catch (error) {
throw new Error(`Failed to initialize Brainy: ${error}`)
}
}
/**
* Register shutdown hooks for graceful count flushing (v3.32.3+)
*
* Ensures pending count batches are persisted before container shutdown.
* Critical for Cloud Run, Fargate, Lambda, and other containerized deployments.
*
* Handles:
* - SIGTERM: Graceful termination (Cloud Run, Fargate, Lambda)
* - SIGINT: Ctrl+C (development/local testing)
* - beforeExit: Node.js cleanup hook (fallback)
*
* NOTE: Registers globally (once for all instances) to avoid MaxListenersExceededWarning
*/
private registerShutdownHooks(): void {
const flushOnShutdown = async () => {
console.log('⚠️ Shutdown signal received - flushing pending counts...')
try {
// Flush counts for all Brainy instances
let flushedCount = 0
for (const instance of Brainy.instances) {
if (instance.storage && typeof (instance.storage as any).flushCounts === 'function') {
await (instance.storage as any).flushCounts()
flushedCount++
}
}
if (flushedCount > 0) {
console.log(`✅ Counts flushed successfully (${flushedCount} instance${flushedCount > 1 ? 's' : ''})`)
}
} catch (error) {
console.error('❌ Failed to flush counts on shutdown:', error)
}
}
// Graceful shutdown signals (registered once globally)
process.on('SIGTERM', async () => {
await flushOnShutdown()
process.exit(0)
})
process.on('SIGINT', async () => {
await flushOnShutdown()
process.exit(0)
})
process.on('beforeExit', async () => {
await flushOnShutdown()
})
}
/**
* Ensure Brainy is initialized
*/
private async ensureInitialized(): Promise<void> {
if (!this.initialized) {
throw new Error('Brainy not initialized. Call init() first.')
}
}
/**
* Check if Brainy is initialized
*/
get isInitialized(): boolean {
return this.initialized
}
// ============= CORE CRUD OPERATIONS =============
/**
* Add an entity to the database
*
* @param params - Parameters for adding the entity
* @returns Promise that resolves to the entity ID
*
* @example Basic entity creation
* ```typescript
* const id = await brain.add({
* data: "John Smith is a software engineer",
* type: NounType.Person,
* metadata: { role: "engineer", team: "backend" }
* })
* console.log(`Created entity: ${id}`)
* ```
*
* @example Adding with custom ID
* ```typescript
* const customId = await brain.add({
* id: "user-12345",
* data: "Important document content",
* type: NounType.Document,
* metadata: { priority: "high", department: "legal" }
* })
* ```
*
* @example Using pre-computed vector (optimization)
* ```typescript
* const vector = await brain.embed("Optimized content")
* const id = await brain.add({
* data: "Optimized content",
* type: NounType.Document,
* vector: vector, // Skip re-embedding
* metadata: { optimized: true }
* })
* ```
*
* @example Multi-tenant usage
* ```typescript
* const id = await brain.add({
* data: "Customer feedback",
* type: NounType.Message,
* service: "customer-portal", // Multi-tenancy
* metadata: { rating: 5, verified: true }
* })
* ```
*/
async add(params: AddParams<T>): Promise<string> {
await this.ensureInitialized()
// Zero-config validation
const { validateAddParams } = await import('./utils/paramValidation.js')
validateAddParams(params)
// Generate ID if not provided
const id = params.id || uuidv4()
// Get or compute vector
const vector = params.vector || (await this.embed(params.data))
// Ensure dimensions are set
if (!this.dimensions) {
this.dimensions = vector.length
} else if (vector.length !== this.dimensions) {
throw new Error(
`Vector dimension mismatch: expected ${this.dimensions}, got ${vector.length}`
)
}
// Execute through augmentation pipeline
return this.augmentationRegistry.execute('add', params, async () => {
// Add to index (Phase 2: pass type for TypeAwareHNSWIndex)
if (this.index instanceof TypeAwareHNSWIndex) {
await this.index.addItem({ id, vector }, params.type as any)
} else {
await this.index.addItem({ id, vector })
}
// Prepare metadata object with data field included
const metadata = {
...(typeof params.data === 'object' && params.data !== null && !Array.isArray(params.data) ? params.data : {}),
...params.metadata,
_data: params.data, // Store the raw data in metadata
noun: params.type,
service: params.service,
createdAt: Date.now()
}
// v4.0.0: Save vector and metadata separately
await this.storage.saveNoun({
id,
vector,
connections: new Map(),
level: 0
})
await this.storage.saveNounMetadata(id, metadata)
// Add to metadata index for fast filtering
await this.metadataIndex.addToIndex(id, metadata)
return id
})
}
/**
* Get an entity by ID
*
* @param id - The unique identifier of the entity to retrieve
* @returns Promise that resolves to the entity if found, null if not found
*
* @example
* // Basic entity retrieval
* const entity = await brainy.get('user-123')
* if (entity) {
* console.log('Found entity:', entity.data)
* console.log('Created at:', new Date(entity.createdAt))
* } else {
* console.log('Entity not found')
* }
*
* @example
* // Working with typed entities
* interface User {
* name: string
* email: string
* }
*
* const brainy = new Brainy<User>({ storage: 'filesystem' })
* const user = await brainy.get('user-456')
* if (user) {
* // TypeScript knows user.metadata is of type User
* console.log(`Hello ${user.metadata.name}`)
* }
*
* @example
* // Safe retrieval with error handling
* try {
* const entity = await brainy.get('document-789')
* if (!entity) {
* throw new Error('Document not found')
* }
*
* // Process the entity
* return {
* id: entity.id,
* content: entity.data,
* type: entity.type,
* metadata: entity.metadata
* }
* } catch (error) {
* console.error('Failed to retrieve entity:', error)
* return null
* }
*
* @example
* // Batch retrieval pattern
* const ids = ['doc-1', 'doc-2', 'doc-3']
* const entities = await Promise.all(
* ids.map(id => brainy.get(id))
* )
* const foundEntities = entities.filter(entity => entity !== null)
* console.log(`Found ${foundEntities.length} out of ${ids.length} entities`)
*
* @example
* // Using with async iteration
* const entityIds = ['user-1', 'user-2', 'user-3']
*
* for (const id of entityIds) {
* const entity = await brainy.get(id)
* if (entity) {
* console.log(`Processing ${entity.type}: ${id}`)
* // Process entity...
* }
* }
*/
async get(id: string): Promise<Entity<T> | null> {
await this.ensureInitialized()
return this.augmentationRegistry.execute('get', { id }, async () => {
// Get from storage
const noun = await this.storage.getNoun(id)
if (!noun) {
return null
}
// Use the common conversion method
return this.convertNounToEntity(noun)
})
}
/**
* Convert a noun from storage to an entity
*/
private async convertNounToEntity(noun: any): Promise<Entity<T>> {
// Extract metadata - separate user metadata from system metadata
const { noun: nounType, service, createdAt, updatedAt, _data, ...userMetadata } = noun.metadata || {}
const entity: Entity<T> = {
id: noun.id,
vector: noun.vector,
type: (nounType as NounType) || NounType.Thing,
metadata: userMetadata as T,
service: service as string,
createdAt: (createdAt as number) || Date.now(),
updatedAt: updatedAt as number
}
// Only add data field if it exists
if (_data !== undefined) {
entity.data = _data
}
return entity
}
/**
* Update an entity
*/
async update(params: UpdateParams<T>): Promise<void> {
await this.ensureInitialized()
// Zero-config validation
const { validateUpdateParams } = await import('./utils/paramValidation.js')
validateUpdateParams(params)
return this.augmentationRegistry.execute('update', params, async () => {
// Get existing entity
const existing = await this.get(params.id)
if (!existing) {
throw new Error(`Entity ${params.id} not found`)
}
// Update vector if data changed
let vector = existing.vector
if (params.data) {
vector = params.vector || (await this.embed(params.data))
// Update in index (remove and re-add since no update method)
// Phase 2: pass type for TypeAwareHNSWIndex
if (this.index instanceof TypeAwareHNSWIndex) {
await this.index.removeItem(params.id, existing.type as any)
await this.index.addItem({ id: params.id, vector }, existing.type as any)
} else {
await this.index.removeItem(params.id)
await this.index.addItem({ id: params.id, vector })
}
}
// Always update the noun with new metadata
const newMetadata = params.merge !== false
? { ...existing.metadata, ...params.metadata }
: params.metadata || existing.metadata
// Merge data objects if both old and new are objects
const dataFields = typeof params.data === 'object' && params.data !== null && !Array.isArray(params.data)
? params.data
: {}
// Prepare updated metadata object with data field
const updatedMetadata = {
...newMetadata,
...dataFields,
_data: params.data !== undefined ? params.data : existing.data, // Update the data field
noun: params.type || existing.type,
service: existing.service,
createdAt: existing.createdAt,
updatedAt: Date.now()
}
// v4.0.0: Save vector and metadata separately
await this.storage.saveNoun({
id: params.id,
vector,
connections: new Map(),
level: 0
})
await this.storage.saveNounMetadata(params.id, updatedMetadata)
// Update metadata index - remove old entry and add new one
await this.metadataIndex.removeFromIndex(params.id, existing.metadata)
await this.metadataIndex.addToIndex(params.id, updatedMetadata)
})
}
/**
* Delete an entity
*/
async delete(id: string): Promise<void> {
// Handle invalid IDs gracefully
if (!id || typeof id !== 'string') {
return // Silently return for invalid IDs
}
await this.ensureInitialized()
return this.augmentationRegistry.execute('delete', { id }, async () => {
// Remove from vector index (Phase 2: get type for TypeAwareHNSWIndex)
if (this.index instanceof TypeAwareHNSWIndex) {
// Get entity metadata to determine type
const metadata = await this.storage.getNounMetadata(id)
if (metadata && metadata.noun) {
await this.index.removeItem(id, metadata.noun as any)
}
} else {
await this.index.removeItem(id)
}
// Remove from metadata index
await this.metadataIndex.removeFromIndex(id)
// Delete from storage
await this.storage.deleteNoun(id)
// Delete metadata (if it exists as separate)
try {
await this.storage.saveMetadata(id, null as any) // Clear metadata
} catch {
// Ignore if not supported
}
// Delete related verbs
const verbs = await this.storage.getVerbsBySource(id)
const targetVerbs = await this.storage.getVerbsByTarget(id)
const allVerbs = [...verbs, ...targetVerbs]
for (const verb of allVerbs) {
// Remove from graph index first
await this.graphIndex.removeVerb(verb.id)
// Then delete from storage
await this.storage.deleteVerb(verb.id)
// Delete verb metadata if exists
try {
if (typeof (this.storage as any).deleteVerbMetadata === 'function') {
await (this.storage as any).deleteVerbMetadata(verb.id)
}
} catch {
// Ignore if not supported
}
}
})
}
// ============= RELATIONSHIP OPERATIONS =============
/**
* Create a relationship between entities
*
* @param params - Parameters for creating the relationship
* @returns Promise that resolves to the relationship ID
*
* @example
* // Basic relationship creation
* const userId = await brainy.add({
* data: { name: 'John', role: 'developer' },
* type: NounType.Person
* })
* const projectId = await brainy.add({
* data: { name: 'AI Assistant', status: 'active' },
* type: NounType.Thing
* })
*
* const relationId = await brainy.relate({
* from: userId,
* to: projectId,
* type: VerbType.WorksOn
* })
*
* @example
* // Bidirectional relationships
* const friendshipId = await brainy.relate({
* from: 'user-1',
* to: 'user-2',
* type: VerbType.Knows,
* bidirectional: true // Creates both directions automatically
* })
*
* @example
* // Weighted relationships for importance/strength
* const collaborationId = await brainy.relate({
* from: 'team-lead',
* to: 'project-alpha',
* type: VerbType.LeadsOn,
* weight: 0.9, // High importance/strength
* metadata: {
* startDate: '2024-01-15',
* responsibility: 'technical leadership',
* hoursPerWeek: 40
* }
* })
*
* @example
* // Typed relationships with custom metadata
* interface CollaborationMeta {
* role: string
* startDate: string
* skillLevel: number
* }
*
* const brainy = new Brainy<CollaborationMeta>({ storage: 'filesystem' })
* const relationId = await brainy.relate({
* from: 'developer-123',
* to: 'project-456',
* type: VerbType.WorksOn,
* weight: 0.85,
* metadata: {
* role: 'frontend developer',
* startDate: '2024-03-01',
* skillLevel: 8
* }
* })
*
* @example
* // Creating complex relationship networks
* const entities = []
* // Create entities
* for (let i = 0; i < 5; i++) {
* const id = await brainy.add({
* data: { name: `Entity ${i}`, value: i * 10 },
* type: NounType.Thing
* })
* entities.push(id)
* }
*
* // Create hierarchical relationships
* for (let i = 0; i < entities.length - 1; i++) {
* await brainy.relate({
* from: entities[i],
* to: entities[i + 1],
* type: VerbType.DependsOn,
* weight: (i + 1) / entities.length
* })
* }
*
* @example
* // Error handling for invalid relationships
* try {
* await brainy.relate({
* from: 'nonexistent-entity',
* to: 'another-entity',
* type: VerbType.RelatedTo
* })
* } catch (error) {
* if (error.message.includes('not found')) {
* console.log('One or both entities do not exist')
* // Handle missing entities...
* }
* }
*/
async relate(params: RelateParams<T>): Promise<string> {
await this.ensureInitialized()
// Zero-config validation
const { validateRelateParams } = await import('./utils/paramValidation.js')
validateRelateParams(params)
// Verify entities exist
const fromEntity = await this.get(params.from)
const toEntity = await this.get(params.to)
if (!fromEntity) {
throw new Error(`Source entity ${params.from} not found`)
}
if (!toEntity) {
throw new Error(`Target entity ${params.to} not found`)
}
// CRITICAL FIX (v3.43.2): Check for duplicate relationships
// This prevents infinite loops where same relationship is created repeatedly
// Bug #1 showed incrementing verb counts (7→8→9...) indicating duplicates
const existingVerbs = await this.storage.getVerbsBySource(params.from)
const duplicate = existingVerbs.find(v =>
v.targetId === params.to &&
v.verb === params.type
)
if (duplicate) {
// Relationship already exists - return existing ID instead of creating duplicate
console.log(`[DEBUG] Skipping duplicate relationship: ${params.from}${params.to} (${params.type})`)
return duplicate.id
}
// Generate ID
const id = uuidv4()
// Compute relationship vector (average of entities)
const relationVector = fromEntity.vector.map(
(v, i) => (v + toEntity.vector[i]) / 2
)
return this.augmentationRegistry.execute('relate', params, async () => {
// v4.0.0: Prepare verb metadata
// CRITICAL (v4.1.2): Include verb type in metadata for count tracking
const verbMetadata = {
verb: params.type, // Store verb type for count synchronization
weight: params.weight ?? 1.0,
...(params.metadata || {}),
createdAt: Date.now()
}
// Save to storage (v4.0.0: vector and metadata separately)
const verb: GraphVerb = {
id,
vector: relationVector,
sourceId: params.from,
targetId: params.to,
source: fromEntity.type,
target: toEntity.type,
verb: params.type,
type: params.type,
weight: params.weight ?? 1.0,
metadata: params.metadata as any,
createdAt: Date.now()
} as any
await this.storage.saveVerb({
id,
vector: relationVector,
connections: new Map(),
verb: params.type,
sourceId: params.from,
targetId: params.to
})
await this.storage.saveVerbMetadata(id, verbMetadata)
// Add to graph index for O(1) lookups
await this.graphIndex.addVerb(verb)
// Create bidirectional if requested
if (params.bidirectional) {
const reverseId = uuidv4()
const reverseVerb: GraphVerb = {
...verb,
id: reverseId,
sourceId: params.to,
targetId: params.from,
source: toEntity.type,
target: fromEntity.type
} as any
await this.storage.saveVerb({
id: reverseId,
vector: relationVector,
connections: new Map(),
verb: params.type,
sourceId: params.to,
targetId: params.from
})
await this.storage.saveVerbMetadata(reverseId, verbMetadata)
// Add reverse relationship to graph index too
await this.graphIndex.addVerb(reverseVerb)
}
return id
})
}
/**
* Delete a relationship
*/
async unrelate(id: string): Promise<void> {
await this.ensureInitialized()
return this.augmentationRegistry.execute('unrelate', { id }, async () => {
// Remove from graph index
await this.graphIndex.removeVerb(id)
// Remove from storage
await this.storage.deleteVerb(id)
})
}
/**
* Get relationships between entities
*
* Supports multiple query patterns:
* - No parameters: Returns all relationships (paginated, default limit: 100)
* - String ID: Returns relationships from that entity (shorthand for { from: id })
* - Parameters object: Fine-grained filtering and pagination
*
* @param paramsOrId - Optional string ID or parameters object
* @returns Promise resolving to array of relationships
*
* @example
* ```typescript
* // Get all relationships (first 100)
* const all = await brain.getRelations()
*
* // Get relationships from specific entity (shorthand syntax)
* const fromEntity = await brain.getRelations(entityId)
*
* // Get relationships with filters
* const filtered = await brain.getRelations({
* type: VerbType.FriendOf,
* limit: 50
* })
*
* // Pagination
* const page2 = await brain.getRelations({ offset: 100, limit: 100 })
* ```
*
* @since v4.1.3 - Fixed bug where calling without parameters returned empty array
* @since v4.1.3 - Added string ID shorthand syntax: getRelations(id)
*/
async getRelations(
paramsOrId?: string | GetRelationsParams
): Promise<Relation<T>[]> {
await this.ensureInitialized()
// Handle string ID shorthand: getRelations(id) -> getRelations({ from: id })
const params = typeof paramsOrId === 'string'
? { from: paramsOrId }
: (paramsOrId || {})
const limit = params.limit || 100
const offset = params.offset || 0
// Production safety: warn for large unfiltered queries
if (!params.from && !params.to && !params.type && limit > 10000) {
console.warn(
`[Brainy] getRelations(): Fetching ${limit} relationships without filters. ` +
`Consider adding 'from', 'to', or 'type' filter for better performance.`
)
}
// Build filter for storage query
const filter: any = {}
if (params.from) {
filter.sourceId = params.from
}
if (params.to) {
filter.targetId = params.to
}
if (params.type) {
filter.verbType = Array.isArray(params.type) ? params.type : [params.type]
}
if (params.service) {
filter.service = params.service
}
// Fetch from storage with pagination at storage layer (efficient!)
const result = await this.storage.getVerbs({
pagination: {
limit,
offset,
cursor: params.cursor
},
filter: Object.keys(filter).length > 0 ? filter : undefined
})
// Convert to Relation format
return this.verbsToRelations(result.items as any)
}
// ============= SEARCH & DISCOVERY =============
/**
* Unified find method - supports natural language and structured queries
* Implements Triple Intelligence with parallel search optimization
*
* @param query - Natural language string or structured FindParams object
* @returns Promise that resolves to array of search results with scores
*
* @example
* // Natural language queries (most common)
* const results = await brainy.find('users who work on AI projects')
* const docs = await brainy.find('documents about machine learning')
* const code = await brainy.find('JavaScript functions for data processing')
*
* @example
* // Structured queries with filtering
* const results = await brainy.find({
* query: 'artificial intelligence',
* type: NounType.Document,
* limit: 5,
* where: {
* status: 'published',
* author: 'expert'
* }
* })
*
* // Process results
* for (const result of results) {
* console.log(`Found: ${result.entity.data} (score: ${result.score})`)
* }
*
* @example
* // Metadata-only filtering (no vector search)
* const activeUsers = await brainy.find({
* type: NounType.Person,
* where: {
* status: 'active',
* department: 'engineering'
* },
* service: 'user-management'
* })
*
* @example
* // Vector similarity search with custom vectors
* const queryVector = await brainy.embed('machine learning algorithms')
* const similar = await brainy.find({
* vector: queryVector,
* limit: 10,
* type: [NounType.Document, NounType.Thing]
* })
*
* @example
* // Proximity search (find entities similar to existing ones)
* const relatedContent = await brainy.find({
* near: 'document-123', // Find entities similar to this one
* limit: 8,
* where: {
* published: true
* }
* })
*
* @example
* // Pagination for large result sets
* const firstPage = await brainy.find({
* query: 'research papers',
* limit: 20,
* offset: 0
* })
*
* const secondPage = await brainy.find({
* query: 'research papers',
* limit: 20,
* offset: 20
* })
*
* @example
* // Complex search with multiple criteria
* const results = await brainy.find({
* query: 'machine learning models',
* type: [NounType.Thing, NounType.Document],
* where: {
* accuracy: { $gte: 0.9 }, // Metadata filtering
* framework: { $in: ['tensorflow', 'pytorch'] }
* },
* service: 'ml-pipeline',
* limit: 15
* })
*
* @example
* // Empty query returns all entities (paginated)
* const allEntities = await brainy.find({
* limit: 50,
* offset: 0
* })
*
* @example
* // Performance-optimized search patterns
* // Fast metadata-only search (no vector computation)
* const fastResults = await brainy.find({
* type: NounType.Person,
* where: { active: true },
* limit: 100
* })
*
* // Combined vector + metadata for precision
* const preciseResults = await brainy.find({
* query: 'senior developers',
* where: {
* experience: { $gte: 5 },
* skills: { $includes: 'javascript' }
* },
* limit: 10
* })
*
* @example
* // Error handling and result processing
* try {
* const results = await brainy.find('complex query here')
*
* if (results.length === 0) {
* console.log('No results found')
* return
* }
*
* // Filter by confidence threshold
* const highConfidence = results.filter(r => r.score > 0.7)
*
* // Sort by score (already sorted by default)
* const topResults = results.slice(0, 5)
*
* return topResults.map(r => ({
* id: r.id,
* content: r.entity.data,
* confidence: r.score,
* metadata: r.entity.metadata
* }))
* } catch (error) {
* console.error('Search failed:', error)
* return []
* }
*/
async find(query: string | FindParams<T>): Promise<Result<T>[]> {
await this.ensureInitialized()
// Parse natural language queries
const params: FindParams<T> =
typeof query === 'string' ? await this.parseNaturalQuery(query) : query
// Phase 3: Automatic type inference for 40% latency reduction
if (params.query && !params.type && this.index instanceof TypeAwareHNSWIndex) {
// Import Phase 3 components dynamically
const { getQueryPlanner } = await import('./query/typeAwareQueryPlanner.js')
const planner = getQueryPlanner()
const plan = await planner.planQuery(params.query)
// Use inferred types if confidence is sufficient
if (plan.confidence > 0.6) {
params.type = plan.targetTypes.length === 1
? plan.targetTypes[0]
: plan.targetTypes
// Log for analytics (production-friendly)
if (this.config.verbose) {
console.log(
`[Phase 3] Inferred types: ${plan.routing} ` +
`(${plan.targetTypes.length} types, ` +
`${(plan.confidence * 100).toFixed(0)}% confidence, ` +
`${plan.estimatedSpeedup.toFixed(1)}x estimated speedup)`
)
}
}
}
// Zero-config validation - only enforces universal truths
const { validateFindParams, recordQueryPerformance } = await import('./utils/paramValidation.js')
validateFindParams(params)
const startTime = Date.now()
const result = await this.augmentationRegistry.execute('find', params, async () => {
let results: Result<T>[] = []
// Distinguish between search criteria (need vector search) and filter criteria (metadata only)
// Treat empty string query as no query
const hasVectorSearchCriteria = (params.query && params.query.trim() !== '') || params.vector || params.near
const hasFilterCriteria = params.where || params.type || params.service
const hasGraphCriteria = params.connected
// Handle metadata-only queries (no vector search needed)
if (!hasVectorSearchCriteria && !hasGraphCriteria && hasFilterCriteria) {
// Build filter for metadata index
let filter: any = {}
if (params.where) Object.assign(filter, params.where)
if (params.service) filter.service = params.service
if (params.type) {
const types = Array.isArray(params.type) ? params.type : [params.type]
if (types.length === 1) {
filter.noun = types[0]
} else {
filter = {
anyOf: types.map(type => ({
noun: type,
...filter
}))
}
}
}
// Get filtered IDs and paginate BEFORE loading entities
const filteredIds = await this.metadataIndex.getIdsForFilter(filter)
const limit = params.limit || 10
const offset = params.offset || 0
const pageIds = filteredIds.slice(offset, offset + limit)
// Load entities for the paginated results
for (const id of pageIds) {
const entity = await this.get(id)
if (entity) {
results.push({
id,
score: 1.0, // All metadata-filtered results equally relevant
entity
})
}
}
return results
}
// Handle completely empty query - return all results paginated
if (!hasVectorSearchCriteria && !hasFilterCriteria && !hasGraphCriteria) {
const limit = params.limit || 20
const offset = params.offset || 0
const storageResults = await this.storage.getNouns({
pagination: { limit: limit + offset, offset: 0 }
})
for (let i = offset; i < Math.min(offset + limit, storageResults.items.length); i++) {
const noun = storageResults.items[i]
if (noun) {
const entity = await this.convertNounToEntity(noun)
results.push({
id: noun.id,
score: 1.0, // All results equally relevant for empty query
entity
})
}
}
return results
}
// Execute parallel searches for optimal performance
const searchPromises: Promise<Result<T>[]>[] = []
// Vector search component
if (params.query || params.vector) {
searchPromises.push(this.executeVectorSearch(params))
}
// Proximity search component
if (params.near) {
searchPromises.push(this.executeProximitySearch(params))
}
// Execute searches in parallel
if (searchPromises.length > 0) {
const searchResults = await Promise.all(searchPromises)
for (const batch of searchResults) {
results.push(...batch)
}
}
// Remove duplicate results from parallel searches
if (results.length > 0) {
const uniqueResults = new Map<string, Result<T>>()
for (const result of results) {
const existing = uniqueResults.get(result.id)
if (!existing || result.score > existing.score) {
uniqueResults.set(result.id, result)
}
}
results = Array.from(uniqueResults.values())
}
// Apply O(log n) metadata filtering using core MetadataIndexManager
if (params.where || params.type || params.service) {
// Build filter object for metadata index
let filter: any = {}
// Base filter from where and service
if (params.where) Object.assign(filter, params.where)
if (params.service) filter.service = params.service
if (params.type) {
const types = Array.isArray(params.type) ? params.type : [params.type]
if (types.length === 1) {
filter.noun = types[0]
} else {
// For multiple types, create separate filter for each type with all conditions
filter = {
anyOf: types.map(type => ({
noun: type,
...filter
}))
}
}
}
const filteredIds = await this.metadataIndex.getIdsForFilter(filter)
// CRITICAL FIX: Handle both cases properly
if (results.length > 0) {
// OPTIMIZED: Filter existing results (from vector search) efficiently
const filteredIdSet = new Set(filteredIds)
results = results.filter((r) => filteredIdSet.has(r.id))
// Apply early pagination for vector + metadata queries
const limit = params.limit || 10
const offset = params.offset || 0
// If we have enough filtered results, sort and paginate early
if (results.length >= offset + limit) {
results.sort((a, b) => b.score - a.score)
results = results.slice(offset, offset + limit)
// Load entities only for the paginated results
for (const result of results) {
if (!result.entity) {
const entity = await this.get(result.id)
if (entity) {
result.entity = entity
}
}
}
// Early return if no other processing needed
if (!params.connected && !params.fusion) {
return results
}
}
} else {
// OPTIMIZED: Apply pagination to filtered IDs BEFORE loading entities
const limit = params.limit || 10
const offset = params.offset || 0
const pageIds = filteredIds.slice(offset, offset + limit)
// Load only entities for current page - O(page_size) instead of O(total_results)
for (const id of pageIds) {
const entity = await this.get(id)
if (entity) {
results.push({
id,
score: 1.0, // All metadata matches are equally relevant
entity: entity as Entity<T>
})
}
}
// Early return for metadata-only queries with pagination applied
if (!params.query && !params.connected) {
return results
}
}
}
// Graph search component with O(1) traversal
if (params.connected) {
results = await this.executeGraphSearch(params, results)
}
// Apply fusion scoring if requested
if (params.fusion && results.length > 0) {
results = this.applyFusionScoring(results, params.fusion)
}
// OPTIMIZED: Sort first, then apply efficient pagination
results.sort((a, b) => b.score - a.score)
const limit = params.limit || 10
const offset = params.offset || 0
// Efficient pagination - only slice what we need
return results.slice(offset, offset + limit)
})
// Record performance for auto-tuning
const duration = Date.now() - startTime
recordQueryPerformance(duration, result.length)
return result
}
/**
* Find similar entities using vector similarity
*
* @param params - Parameters specifying the target for similarity search
* @returns Promise that resolves to array of similar entities with similarity scores
*
* @example
* // Find entities similar to a specific entity by ID
* const similarDocs = await brainy.similar({
* to: 'document-123',
* limit: 10
* })
*
* // Process similarity results
* for (const result of similarDocs) {
* console.log(`Similar entity: ${result.entity.data} (similarity: ${result.score})`)
* }
*
* @example
* // Find similar entities with type filtering
* const similarUsers = await brainy.similar({
* to: 'user-456',
* type: NounType.Person,
* limit: 5,
* where: {
* active: true,
* department: 'engineering'
* }
* })
*
* @example
* // Find similar using a custom vector
* const customVector = await brainy.embed('artificial intelligence research')
* const similar = await brainy.similar({
* to: customVector,
* limit: 8,
* type: [NounType.Document, NounType.Thing]
* })
*
* @example
* // Find similar using an entity object
* const sourceEntity = await brainy.get('research-paper-789')
* if (sourceEntity) {
* const relatedPapers = await brainy.similar({
* to: sourceEntity,
* limit: 12,
* where: {
* published: true,
* category: 'machine-learning'
* }
* })
* }
*
* @example
* // Content recommendation system
* async function getRecommendations(userId: string) {
* // Get user's recent interactions
* const user = await brainy.get(userId)
* if (!user) return []
*
* // Find similar content
* const recommendations = await brainy.similar({
* to: userId,
* type: NounType.Document,
* limit: 20,
* where: {
* published: true,
* language: 'en'
* }
* })
*
* // Filter out already seen content
* return recommendations.filter(rec =>
* !user.metadata.viewedItems?.includes(rec.id)
* )
* }
*
* @example
* // Duplicate detection system
* async function findPotentialDuplicates(entityId: string) {
* const duplicates = await brainy.similar({
* to: entityId,
* limit: 10
* })
*
* // High similarity might indicate duplicates
* const highSimilarity = duplicates.filter(d => d.score > 0.95)
*
* if (highSimilarity.length > 0) {
* console.log('Potential duplicates found:', highSimilarity.map(d => d.id))
* }
*
* return highSimilarity
* }
*
* @example
* // Error handling for missing entities
* try {
* const similar = await brainy.similar({
* to: 'nonexistent-entity',
* limit: 5
* })
* } catch (error) {
* if (error.message.includes('not found')) {
* console.log('Source entity does not exist')
* // Handle missing source entity
* }
* }
*/
async similar(params: SimilarParams<T>): Promise<Result<T>[]> {
await this.ensureInitialized()
// Get target vector
let targetVector: Vector
if (typeof params.to === 'string') {
const entity = await this.get(params.to)
if (!entity) {
throw new Error(`Entity ${params.to} not found`)
}
targetVector = entity.vector
} else if (Array.isArray(params.to)) {
targetVector = params.to as Vector
} else {
targetVector = (params.to as Entity<T>).vector
}
// Use find with vector
return this.find({
vector: targetVector,
limit: params.limit,
type: params.type,
where: params.where,
service: params.service
})
}
// ============= BATCH OPERATIONS =============
/**
* Add multiple entities
*/
async addMany(params: AddManyParams<T>): Promise<BatchResult<string>> {
await this.ensureInitialized()
const result: BatchResult<string> = {
successful: [],
failed: [],
total: params.items.length,
duration: 0
}
const startTime = Date.now()
const chunkSize = params.chunkSize || 100
// Process in chunks
for (let i = 0; i < params.items.length; i += chunkSize) {
const chunk = params.items.slice(i, i + chunkSize)
const promises = chunk.map(async (item) => {
try {
const id = await this.add(item)
result.successful.push(id)
} catch (error) {
result.failed.push({
item,
error: (error as Error).message
})
if (!params.continueOnError) {
throw error
}
}
})
if (params.parallel !== false) {
await Promise.allSettled(promises)
} else {
for (const promise of promises) {
await promise
}
}
// Report progress
if (params.onProgress) {
params.onProgress(
result.successful.length + result.failed.length,
result.total
)
}
}
result.duration = Date.now() - startTime
return result
}
/**
* Delete multiple entities
*/
async deleteMany(params: DeleteManyParams): Promise<BatchResult<string>> {
await this.ensureInitialized()
// Determine what to delete
let idsToDelete: string[] = []
if (params.ids) {
idsToDelete = params.ids
} else if (params.type || params.where) {
// Find entities to delete
const entities = await this.find({
type: params.type,
where: params.where,
limit: params.limit || 1000
})
idsToDelete = entities.map((e) => e.id)
}
const result: BatchResult<string> = {
successful: [],
failed: [],
total: idsToDelete.length,
duration: 0
}
const startTime = Date.now()
for (const id of idsToDelete) {
try {
await this.delete(id)
result.successful.push(id)
} catch (error) {
result.failed.push({
item: id,
error: (error as Error).message
})
}
if (params.onProgress) {
params.onProgress(
result.successful.length + result.failed.length,
result.total
)
}
}
result.duration = Date.now() - startTime
return result
}
/**
* Update multiple entities with batch processing
*/
async updateMany(params: {
items: UpdateParams<T>[]
chunkSize?: number
parallel?: boolean
continueOnError?: boolean
onProgress?: (completed: number, total: number) => void
}): Promise<BatchResult<string>> {
await this.ensureInitialized()
const result: BatchResult<string> = {
successful: [],
failed: [],
total: params.items.length,
duration: 0
}
const startTime = Date.now()
const chunkSize = params.chunkSize || 100
// Process in chunks
for (let i = 0; i < params.items.length; i += chunkSize) {
const chunk = params.items.slice(i, i + chunkSize)
const promises = chunk.map(async (item, chunkIndex) => {
try {
await this.update(item)
result.successful.push(item.id)
} catch (error) {
result.failed.push({
item,
error: (error as Error).message
})
if (!params.continueOnError) {
throw error
}
}
})
if (params.parallel !== false) {
await Promise.allSettled(promises)
} else {
for (const promise of promises) {
await promise
}
}
// Report progress
if (params.onProgress) {
params.onProgress(
result.successful.length + result.failed.length,
result.total
)
}
}
result.duration = Date.now() - startTime
return result
}
/**
* Create multiple relationships with batch processing
*/
async relateMany(params: RelateManyParams<T>): Promise<string[]> {
await this.ensureInitialized()
const result: BatchResult<string> = {
successful: [],
failed: [],
total: params.items.length,
duration: 0
}
const startTime = Date.now()
const chunkSize = params.chunkSize || 100
for (let i = 0; i < params.items.length; i += chunkSize) {
const chunk = params.items.slice(i, i + chunkSize)
if (params.parallel) {
// Process chunk in parallel
const promises = chunk.map(async (item) => {
try {
const relationId = await this.relate(item)
result.successful.push(relationId)
} catch (error: any) {
result.failed.push({
item,
error: error.message || 'Unknown error'
})
if (!params.continueOnError) {
throw error
}
}
})
await Promise.all(promises)
} else {
// Process chunk sequentially
for (const item of chunk) {
try {
const relationId = await this.relate(item)
result.successful.push(relationId)
} catch (error: any) {
result.failed.push({
item,
error: error.message || 'Unknown error'
})
if (!params.continueOnError) {
throw error
}
}
}
}
// Report progress
if (params.onProgress) {
params.onProgress(
result.successful.length + result.failed.length,
result.total
)
}
}
result.duration = Date.now() - startTime
return result.successful
}
/**
* Clear all data from the database
*/
async clear(): Promise<void> {
await this.ensureInitialized()
return this.augmentationRegistry.execute('clear', {}, async () => {
// Clear storage
await this.storage.clear()
// Reset index
if ('clear' in this.index && typeof this.index.clear === 'function') {
await this.index.clear()
} else {
// Recreate index if no clear method
this.index = this.setupIndex()
}
// Reset dimensions
this.dimensions = undefined
// Clear any cached sub-APIs
this._neural = undefined
this._nlp = undefined
this._tripleIntelligence = undefined
})
}
/**
* Get total count of nouns - O(1) operation
* @returns Promise that resolves to the total number of nouns
*/
async getNounCount(): Promise<number> {
await this.ensureInitialized()
return this.storage.getNounCount()
}
/**
* Get total count of verbs - O(1) operation
* @returns Promise that resolves to the total number of verbs
*/
async getVerbCount(): Promise<number> {
await this.ensureInitialized()
return this.storage.getVerbCount()
}
// ============= SUB-APIS =============
/**
* Neural API - Advanced AI operations
*/
neural(): ImprovedNeuralAPI {
if (!this._neural) {
this._neural = new ImprovedNeuralAPI(this as any)
}
return this._neural
}
/**
* Natural Language Processing API
*/
nlp(): NaturalLanguageProcessor {
if (!this._nlp) {
this._nlp = new NaturalLanguageProcessor(this)
}
return this._nlp
}
/**
* Entity Extraction API - Neural extraction with NounType taxonomy
*
* Extracts entities from text using:
* - Pattern-based candidate detection
* - Embedding-based type classification
* - Context-aware confidence scoring
*
* @param text - Text to extract entities from
* @param options - Extraction options
* @returns Array of extracted entities with types and confidence
*
* @example
* const entities = await brain.extract('John Smith founded Acme Corp in New York')
* // [
* // { text: 'John Smith', type: NounType.Person, confidence: 0.95 },
* // { text: 'Acme Corp', type: NounType.Organization, confidence: 0.92 },
* // { text: 'New York', type: NounType.Location, confidence: 0.88 }
* // ]
*/
async extract(
text: string,
options?: {
types?: NounType[]
confidence?: number
includeVectors?: boolean
neuralMatching?: boolean
}
): Promise<ExtractedEntity[]> {
if (!this._extractor) {
this._extractor = new NeuralEntityExtractor(this)
}
return await this._extractor.extract(text, options)
}
/**
* Extract concepts from text
*
* Simplified interface for concept/topic extraction
* Returns only concept names as strings for easy metadata population
*
* @param text - Text to extract concepts from
* @param options - Extraction options
* @returns Array of concept names
*
* @example
* const concepts = await brain.extractConcepts('Using OAuth for authentication')
* // ['oauth', 'authentication']
*/
async extractConcepts(
text: string,
options?: {
confidence?: number
limit?: number
}
): Promise<string[]> {
const entities = await this.extract(text, {
types: [NounType.Concept, NounType.Topic],
confidence: options?.confidence || 0.7,
neuralMatching: true
})
// Deduplicate and normalize
const conceptSet = new Set(entities.map(e => e.text.toLowerCase()))
const concepts = Array.from(conceptSet)
// Apply limit if specified
return options?.limit ? concepts.slice(0, options.limit) : concepts
}
/**
* Import files with intelligent extraction and dual storage (VFS + Knowledge Graph)
*
* Unified import system that:
* - Auto-detects format (Excel, PDF, CSV, JSON, Markdown)
* - Extracts entities with AI-powered name/type detection
* - Infers semantic relationships from context
* - Stores in both VFS (organized files) and Knowledge Graph (connected entities)
* - Links VFS files to graph entities
*
* @since 4.0.0
*
* @example Quick Start (All AI features enabled by default)
* ```typescript
* const result = await brain.import('./glossary.xlsx')
* // Auto-detects format, extracts entities, infers relationships
* ```
*
* @example Full-Featured Import (v4.x)
* ```typescript
* const result = await brain.import('./data.xlsx', {
* // AI features
* enableNeuralExtraction: true, // Extract entity names/metadata
* enableRelationshipInference: true, // Detect semantic relationships
* enableConceptExtraction: true, // Extract types/concepts
*
* // VFS features
* vfsPath: '/imports/my-data', // Store in VFS directory
* groupBy: 'type', // Organize by entity type
* preserveSource: true, // Keep original file
*
* // Progress tracking
* onProgress: (p) => console.log(p.message)
* })
* ```
*
* @example Performance Tuning (Large Files)
* ```typescript
* const result = await brain.import('./huge-file.csv', {
* enableDeduplication: false, // Skip dedup for speed
* confidenceThreshold: 0.8, // Higher threshold = fewer entities
* onProgress: (p) => console.log(`${p.processed}/${p.total}`)
* })
* ```
*
* @example Import from Buffer or Object
* ```typescript
* // From buffer
* const result = await brain.import(buffer, { format: 'pdf' })
*
* // From object
* const result = await brain.import({ entities: [...] })
* ```
*
* @throws {Error} If invalid options are provided (v4.x breaking changes)
*
* @see {@link https://brainy.dev/docs/api/import API Documentation}
* @see {@link https://brainy.dev/docs/guides/migrating-to-v4 Migration Guide}
*
* @remarks
* **⚠️ Breaking Changes from v3.x:**
*
* The import API was redesigned in v4.0.0 for clarity and better feature control.
* Old v3.x option names are **no longer recognized** and will throw errors.
*
* **Option Changes:**
* - ❌ `extractRelationships` → ✅ `enableRelationshipInference`
* - ❌ `createFileStructure` → ✅ `vfsPath: '/your/path'`
* - ❌ `autoDetect` → ✅ *(removed - always enabled)*
* - ❌ `excelSheets` → ✅ *(removed - all sheets processed)*
* - ❌ `pdfExtractTables` → ✅ *(removed - always enabled)*
*
* **New Options:**
* - ✅ `enableNeuralExtraction` - Extract entity names via AI
* - ✅ `enableConceptExtraction` - Extract entity types via AI
* - ✅ `preserveSource` - Save original file in VFS
*
* **If you get an error:**
* The error message includes migration instructions and examples.
* See the complete migration guide for all details.
*
* **Why these changes?**
* - Clearer option names (explicitly describe what they do)
* - Separation of concerns (neural, relationships, VFS are separate)
* - Better defaults (AI features enabled by default)
* - Reduced confusion (removed redundant options)
*/
async import(
source: Buffer | string | object,
options?: {
format?: 'excel' | 'pdf' | 'csv' | 'json' | 'markdown'
vfsPath?: string
groupBy?: 'type' | 'sheet' | 'flat' | 'custom'
customGrouping?: (entity: any) => string
createEntities?: boolean
createRelationships?: boolean
preserveSource?: boolean
enableNeuralExtraction?: boolean
enableRelationshipInference?: boolean
enableConceptExtraction?: boolean
confidenceThreshold?: number
onProgress?: (progress: {
stage: 'detecting' | 'extracting' | 'storing-vfs' | 'storing-graph' | 'relationships' | 'complete'
phase?: 'extraction' | 'relationships'
message: string
processed?: number
current?: number
total?: number
entities?: number
relationships?: number
throughput?: number
eta?: number
}) => void
}
) {
// Lazy load ImportCoordinator
const { ImportCoordinator } = await import('./import/ImportCoordinator.js')
const coordinator = new ImportCoordinator(this)
await coordinator.init()
return await coordinator.import(source, options)
}
/**
* Virtual File System API - Knowledge Operating System
*/
vfs(): VirtualFileSystem {
if (!this._vfs) {
this._vfs = new VirtualFileSystem(this)
}
return this._vfs
}
/**
* Data Management API - backup, restore, import, export
*/
async data() {
const { DataAPI } = await import('./api/DataAPI.js')
return new DataAPI(
this.storage,
(id: string) => this.get(id),
undefined, // No getRelation method yet
this
)
}
/**
* Get Triple Intelligence System
* Advanced pattern recognition and relationship analysis
*/
getTripleIntelligence(): TripleIntelligenceSystem {
if (!this._tripleIntelligence) {
// Use core components directly - no lazy loading needed
this._tripleIntelligence = new TripleIntelligenceSystem(
this.metadataIndex,
this.index,
this.graphIndex,
async (text: string) => this.embedder(text),
this.storage
)
}
return this._tripleIntelligence
}
// ============= METADATA INTELLIGENCE API =============
/**
* Get all indexed field names currently in the metadata index
* Essential for dynamic query building and NLP field discovery
*/
async getAvailableFields(): Promise<string[]> {
await this.ensureInitialized()
return this.metadataIndex.getFilterFields()
}
/**
* Get field statistics including cardinality and query patterns
* Used for query optimization and understanding data distribution
*/
async getFieldStatistics(): Promise<Map<string, any>> {
await this.ensureInitialized()
return this.metadataIndex.getFieldStatistics()
}
/**
* Get fields sorted by cardinality for optimal filtering
* Lower cardinality fields are better for initial filtering
*/
async getFieldsWithCardinality(): Promise<Array<{
field: string
cardinality: number
distribution: string
}>> {
await this.ensureInitialized()
return this.metadataIndex.getFieldsWithCardinality()
}
/**
* Get optimal query plan for a given set of filters
* Returns field processing order and estimated cost
*/
async getOptimalQueryPlan(filters: Record<string, any>): Promise<{
strategy: 'exact' | 'range' | 'hybrid'
fieldOrder: string[]
estimatedCost: number
}> {
await this.ensureInitialized()
return this.metadataIndex.getOptimalQueryPlan(filters)
}
/**
* Get filter values for a specific field (for UI dropdowns, etc)
*/
async getFieldValues(field: string): Promise<string[]> {
await this.ensureInitialized()
return this.metadataIndex.getFilterValues(field)
}
/**
* Get fields that commonly appear with a specific entity type
* Essential for type-aware NLP parsing
*/
async getFieldsForType(nounType: NounType): Promise<Array<{
field: string
affinity: number
occurrences: number
totalEntities: number
}>> {
await this.ensureInitialized()
return this.metadataIndex.getFieldsForType(nounType)
}
/**
* Get comprehensive type-field affinity statistics
* Useful for understanding data patterns and NLP optimization
*/
async getTypeFieldAffinityStats(): Promise<{
totalTypes: number
averageFieldsPerType: number
typeBreakdown: Record<string, {
totalEntities: number
uniqueFields: number
topFields: Array<{field: string; affinity: number}>
}>
}> {
await this.ensureInitialized()
return this.metadataIndex.getTypeFieldAffinityStats()
}
/**
* Create a streaming pipeline
*/
stream() {
const { Pipeline } = require('./streaming/pipeline.js')
return new Pipeline(this)
}
/**
* Get insights about the data
*/
async insights(): Promise<{
entities: number
relationships: number
types: Record<string, number>
services: string[]
density: number
}> {
await this.ensureInitialized()
// O(1) entity counting using existing MetadataIndexManager
const entities = this.metadataIndex.getTotalEntityCount()
// O(1) count by type using existing index tracking
const typeCountsMap = this.metadataIndex.getAllEntityCounts()
const types: Record<string, number> = Object.fromEntries(typeCountsMap)
// O(1) relationships count using GraphAdjacencyIndex
const relationships = this.graphIndex.getTotalRelationshipCount()
// Get unique services - O(log n) using index
const serviceValues = await this.metadataIndex.getFilterValues('service')
const services = serviceValues.filter(Boolean)
// Calculate density (relationships per entity)
const density = entities > 0 ? relationships / entities : 0
return {
entities,
relationships,
types,
services,
density
}
}
/**
* Flush all indexes and caches to persistent storage
* CRITICAL FIX (v3.43.2): Ensures data survives server restarts
*
* Flushes all 4 core indexes:
* 1. Storage counts (entity/verb counts by type)
* 2. Metadata index (field indexes + EntityIdMapper)
* 3. Graph adjacency index (relationship cache)
* 4. HNSW vector index (no flush needed - saves directly)
*
* @example
* // Flush after bulk operations
* await brain.import('./data.xlsx')
* await brain.flush()
*
* // Flush before shutdown
* process.on('SIGTERM', async () => {
* await brain.flush()
* process.exit(0)
* })
*/
async flush(): Promise<void> {
await this.ensureInitialized()
console.log('🔄 Flushing Brainy indexes and caches to disk...')
const startTime = Date.now()
// Flush all components in parallel for performance
await Promise.all([
// 1. Flush storage adapter counts (entity/verb counts by type)
(async () => {
if (this.storage && typeof (this.storage as any).flushCounts === 'function') {
await (this.storage as any).flushCounts()
}
})(),
// 2. Flush metadata index (field indexes + EntityIdMapper)
this.metadataIndex.flush(),
// 3. Flush graph adjacency index (relationship cache)
// Note: Graph structure is already persisted via storage.saveVerb() calls
// This just flushes the in-memory cache for performance
this.graphIndex.flush()
])
const elapsed = Date.now() - startTime
console.log(`✅ All indexes flushed to disk in ${elapsed}ms`)
}
/**
* Efficient Pagination API - Production-scale pagination using index-first approach
* Automatically optimizes based on query type and applies pagination at the index level
*/
get pagination() {
return {
// Get paginated results with automatic optimization
find: async (params: FindParams<T> & { page?: number, pageSize?: number }) => {
const page = params.page || 1
const pageSize = params.pageSize || 10
const offset = (page - 1) * pageSize
return this.find({
...params,
limit: pageSize,
offset
})
},
// Get total count for pagination UI (O(1) when possible)
count: async (params: Omit<FindParams<T>, 'limit' | 'offset'>) => {
// For simple type queries, use O(1) index counting
if (params.type && !params.query && !params.where && !params.connected) {
const types = Array.isArray(params.type) ? params.type : [params.type]
return types.reduce((sum, type) => sum + this.metadataIndex.getEntityCountByType(type), 0)
}
// For complex queries, use metadata index for efficient counting
if (params.where || params.service) {
let filter: any = {}
if (params.where) Object.assign(filter, params.where)
if (params.service) filter.service = params.service
if (params.type) {
const types = Array.isArray(params.type) ? params.type : [params.type]
if (types.length === 1) {
filter.noun = types[0]
} else {
const baseFilter = { ...filter }
filter = {
anyOf: types.map(type => ({ noun: type, ...baseFilter }))
}
}
}
const filteredIds = await this.metadataIndex.getIdsForFilter(filter)
return filteredIds.length
}
// Fallback: total entity count
return this.metadataIndex.getTotalEntityCount()
},
// Get pagination metadata
meta: async (params: FindParams<T> & { page?: number, pageSize?: number }) => {
const page = params.page || 1
const pageSize = params.pageSize || 10
const totalCount = await this.pagination.count(params)
const totalPages = Math.ceil(totalCount / pageSize)
return {
page,
pageSize,
totalCount,
totalPages,
hasNext: page < totalPages,
hasPrev: page > 1
}
}
}
}
/**
* Streaming API - Process millions of entities with constant memory using existing Pipeline
* Integrates with index-based optimizations for maximum efficiency
*/
get streaming(): {
entities: (filter?: Partial<FindParams<T>>) => AsyncGenerator<Entity<T>>
search: (params: FindParams<T>, batchSize?: number) => AsyncGenerator<{ id: string; score: number; entity: Entity<T> }>
relationships: (filter?: { type?: string; sourceId?: string; targetId?: string }) => AsyncGenerator<any>
pipeline: (source: AsyncIterable<any>) => any
process: (processor: (entity: Entity<T>) => Promise<Entity<T>>, filter?: Partial<FindParams<T>>, options?: { batchSize: number; parallel: number }) => Promise<void>
} {
return {
// Stream all entities with optional filtering
entities: async function* (this: Brainy<T>, filter?: Partial<FindParams<T>>) {
if (filter?.type || filter?.where || filter?.service) {
// Use MetadataIndexManager for efficient filtered streaming
let filterObj: any = {}
if (filter.where) Object.assign(filterObj, filter.where)
if (filter.service) filterObj.service = filter.service
if (filter.type) {
const types = Array.isArray(filter.type) ? filter.type : [filter.type]
if (types.length === 1) {
filterObj.noun = types[0]
} else {
const baseFilterObj = { ...filterObj }
filterObj = {
anyOf: types.map(type => ({ noun: type, ...baseFilterObj }))
}
}
}
const filteredIds = await this.metadataIndex.getIdsForFilter(filterObj)
// Stream filtered entities in batches for memory efficiency
const batchSize = 100
for (let i = 0; i < filteredIds.length; i += batchSize) {
const batchIds = filteredIds.slice(i, i + batchSize)
for (const id of batchIds) {
const entity = await this.get(id)
if (entity) yield entity as Entity<T>
}
}
} else {
// Stream all entities using storage adapter pagination
let offset = 0
const batchSize = 100
let hasMore = true
while (hasMore) {
const result = await this.storage.getNouns({
pagination: { offset, limit: batchSize }
})
for (const noun of result.items) {
// Convert HNSWNoun to Entity<T>
yield noun as unknown as Entity<T>
}
hasMore = result.hasMore
offset += batchSize
}
}
}.bind(this),
// Stream search results efficiently
search: async function* (this: Brainy<T>, params: FindParams<T>, batchSize = 50) {
const originalLimit = params.limit
let offset = 0
let hasMore = true
while (hasMore) {
const batchResults = await this.find({
...params,
limit: batchSize,
offset
})
for (const result of batchResults) {
yield result
}
hasMore = batchResults.length === batchSize
offset += batchSize
// Respect original limit if specified
if (originalLimit && offset >= originalLimit) {
break
}
}
}.bind(this),
// Stream relationships efficiently
relationships: async function* (this: Brainy<T>, filter?: { type?: string, sourceId?: string, targetId?: string }) {
let offset = 0
const batchSize = 100
let hasMore = true
while (hasMore) {
const result = await this.storage.getVerbs({
pagination: { offset, limit: batchSize },
filter
})
for (const verb of result.items) {
yield verb
}
hasMore = result.hasMore
offset += batchSize
}
}.bind(this),
// Create processing pipeline from stream
pipeline: (source: AsyncIterable<any>) => {
return createPipeline(this).source(source)
},
// Batch process entities with Pipeline system
process: async function (this: Brainy<T>,
processor: (entity: Entity<T>) => Promise<Entity<T>>,
filter?: Partial<FindParams<T>>,
options = { batchSize: 50, parallel: 4 }
) {
return createPipeline(this)
.source(this.streaming.entities(filter))
.batch(options.batchSize)
.parallelSink(async (batch: Entity<T>[]) => {
await Promise.all(batch.map(processor))
}, options.parallel)
.run()
}.bind(this)
}
}
/**
* O(1) Count API - Production-scale counting using existing indexes
* Works across all storage adapters (FileSystem, OPFS, S3, Memory)
*
* Phase 1b Enhancement: Type-aware methods with 99.2% memory reduction
*/
get counts() {
return {
// O(1) total entity count
entities: () => this.metadataIndex.getTotalEntityCount(),
// O(1) total relationship count
relationships: () => this.graphIndex.getTotalRelationshipCount(),
// O(1) count by type (string-based, backward compatible)
byType: (type?: string) => {
if (type) {
return this.metadataIndex.getEntityCountByType(type)
}
return Object.fromEntries(this.metadataIndex.getAllEntityCounts())
},
// Phase 1b: O(1) count by type enum (Uint32Array-based, more efficient)
// Uses fixed-size type tracking: 284 bytes vs ~35KB with Maps (99.2% reduction)
byTypeEnum: (type: NounType) => {
return this.metadataIndex.getEntityCountByTypeEnum(type)
},
// Phase 1b: Get top N noun types by entity count (useful for cache warming)
topTypes: (n: number = 10) => {
return this.metadataIndex.getTopNounTypes(n)
},
// Phase 1b: Get top N verb types by count
topVerbTypes: (n: number = 10) => {
return this.metadataIndex.getTopVerbTypes(n)
},
// Phase 1b: Get all noun type counts as typed Map
// More efficient than byType() for type-aware queries
allNounTypeCounts: () => {
return this.metadataIndex.getAllNounTypeCounts()
},
// Phase 1b: Get all verb type counts as typed Map
allVerbTypeCounts: () => {
return this.metadataIndex.getAllVerbTypeCounts()
},
// O(1) count by relationship type
byRelationshipType: (type?: string) => {
if (type) {
return this.graphIndex.getRelationshipCountByType(type)
}
return Object.fromEntries(this.graphIndex.getAllRelationshipCounts())
},
// O(1) count by field-value criteria
byCriteria: async (field: string, value: any) => {
return this.metadataIndex.getCountForCriteria(field, value)
},
// Get all type counts as Map for performance-critical operations
getAllTypeCounts: () => this.metadataIndex.getAllEntityCounts(),
// Get complete statistics
getStats: () => {
const entityStats = {
total: this.metadataIndex.getTotalEntityCount(),
byType: Object.fromEntries(this.metadataIndex.getAllEntityCounts())
}
const relationshipStats = this.graphIndex.getRelationshipStats()
return {
entities: entityStats,
relationships: relationshipStats,
density: entityStats.total > 0 ? relationshipStats.totalRelationships / entityStats.total : 0
}
}
}
}
/**
* Augmentations API - Clean and simple
*/
get augmentations() {
return {
list: () => this.augmentationRegistry.getAll().map(a => a.name),
get: (name: string) => this.augmentationRegistry.getAll().find(a => a.name === name),
has: (name: string) => this.augmentationRegistry.getAll().some(a => a.name === name)
}
}
/**
* Get complete statistics - convenience method
* For more granular counting, use brain.counts API
* @returns Complete statistics including entities, relationships, and density
*/
getStats() {
return this.counts.getStats()
}
// ============= HELPER METHODS =============
/**
* Parse natural language query using advanced NLP with 220+ patterns
* The embedding model is always available as it's core to Brainy's functionality
*/
private async parseNaturalQuery(query: string): Promise<FindParams<T>> {
// Initialize NLP processor if needed (lazy loading)
if (!this._nlp) {
this._nlp = new NaturalLanguageProcessor(this as any)
await this._nlp.init() // Ensure pattern library is loaded
}
// Process with our advanced pattern library (220+ patterns with embeddings)
const tripleQuery = await this._nlp.processNaturalQuery(query)
// Convert TripleQuery to FindParams
const params: FindParams<T> = {}
// Handle vector search
if (tripleQuery.like || tripleQuery.similar) {
params.query = typeof tripleQuery.like === 'string' ? tripleQuery.like :
typeof tripleQuery.similar === 'string' ? tripleQuery.similar : query
} else if (!tripleQuery.where && !tripleQuery.connected) {
// Default to vector search if no other criteria specified
params.query = query
}
// Handle metadata filtering
if (tripleQuery.where) {
params.where = tripleQuery.where as Partial<T>
}
// Handle graph relationships
if (tripleQuery.connected) {
params.connected = {
to: Array.isArray(tripleQuery.connected.to) ? tripleQuery.connected.to[0] : tripleQuery.connected.to,
from: Array.isArray(tripleQuery.connected.from) ? tripleQuery.connected.from[0] : tripleQuery.connected.from,
via: tripleQuery.connected.type as any,
depth: tripleQuery.connected.depth,
direction: tripleQuery.connected.direction
}
}
// Handle other options
if (tripleQuery.limit) params.limit = tripleQuery.limit
if (tripleQuery.offset) params.offset = tripleQuery.offset
return this.enhanceNLPResult(params, query)
}
/**
* Enhance NLP results with fusion scoring
*/
private enhanceNLPResult(params: FindParams<T>, _originalQuery: string): FindParams<T> {
// Add fusion scoring for complex queries
if (params.query && params.where && Object.keys(params.where).length > 0) {
params.fusion = params.fusion || {
strategy: 'adaptive',
weights: {
vector: 0.6,
field: 0.3,
graph: 0.1
}
}
}
return params
}
/**
* Execute vector search component
*/
private async executeVectorSearch(params: FindParams<T>): Promise<Result<T>[]> {
const vector = params.vector || (await this.embed(params.query!))
const limit = params.limit || 10
// Phase 2: Pass type for TypeAwareHNSWIndex (10x faster for type-specific queries)
const searchResults = this.index instanceof TypeAwareHNSWIndex
? await this.index.search(vector, limit * 2, params.type as any)
: await this.index.search(vector, limit * 2)
const results: Result<T>[] = []
for (const [id, distance] of searchResults) {
const entity = await this.get(id)
if (entity) {
const score = Math.max(0, Math.min(1, 1 / (1 + distance)))
results.push({ id, score, entity })
}
}
return results
}
/**
* Execute proximity search component
*/
private async executeProximitySearch(params: FindParams<T>): Promise<Result<T>[]> {
if (!params.near) return []
const nearEntity = await this.get(params.near.id)
if (!nearEntity) return []
// Phase 2: Pass type for TypeAwareHNSWIndex
const nearResults = this.index instanceof TypeAwareHNSWIndex
? await this.index.search(nearEntity.vector, params.limit || 10, params.type as any)
: await this.index.search(nearEntity.vector, params.limit || 10)
const results: Result<T>[] = []
for (const [id, distance] of nearResults) {
const score = Math.max(0, Math.min(1, 1 / (1 + distance)))
if (score >= (params.near.threshold || 0.7)) {
const entity = await this.get(id)
if (entity) {
results.push({ id, score, entity })
}
}
}
return results
}
/**
* Execute graph search component with O(1) traversal
*/
private async executeGraphSearch(params: FindParams<T>, existingResults: Result<T>[]): Promise<Result<T>[]> {
if (!params.connected) return existingResults
const { from, to, direction = 'both' } = params.connected
const connectedIds: string[] = []
if (from) {
const neighbors = await this.graphIndex.getNeighbors(from, direction)
connectedIds.push(...neighbors)
}
if (to) {
const reverseDirection = direction === 'in' ? 'out' : direction === 'out' ? 'in' : 'both'
const neighbors = await this.graphIndex.getNeighbors(to, reverseDirection)
connectedIds.push(...neighbors)
}
// Filter existing results to only connected entities
if (existingResults.length > 0) {
const connectedIdSet = new Set(connectedIds)
return existingResults.filter(r => connectedIdSet.has(r.id))
}
// Create results from connected entities
const results: Result<T>[] = []
for (const id of connectedIds) {
const entity = await this.get(id)
if (entity) {
results.push({
id,
score: 1.0,
entity
})
}
}
return results
}
/**
* Apply fusion scoring for multi-source results
*/
private applyFusionScoring(results: Result<T>[], fusionType: any): Result<T>[] {
// Implement different fusion strategies
const strategy = typeof fusionType === 'string' ? fusionType : fusionType.strategy || 'weighted'
switch (strategy) {
case 'max':
// Use maximum score from any source
return results
case 'average':
// Average scores from multiple sources
const scoreMap = new Map<string, number[]>()
for (const result of results) {
const scores = scoreMap.get(result.id) || []
scores.push(result.score)
scoreMap.set(result.id, scores)
}
return results.map(r => ({
...r,
score: scoreMap.get(r.id)!.reduce((a, b) => a + b, 0) / scoreMap.get(r.id)!.length
}))
case 'weighted':
default:
// Weighted combination based on source importance
const weights = fusionType.weights || { vector: 0.7, metadata: 0.2, graph: 0.1 }
return results.map(r => ({
...r,
score: r.score * (weights.vector || 1.0)
}))
}
}
/**
* Apply graph constraints using O(1) GraphAdjacencyIndex - TRUE Triple Intelligence!
*/
private async applyGraphConstraints(
results: Result<T>[],
constraints: any
): Promise<Result<T>[]> {
// Filter by graph connections using fast graph index
if (constraints.to || constraints.from) {
const filtered: Result<T>[] = []
for (const result of results) {
let hasConnection = false
if (constraints.to) {
// Check if this entity connects TO the target (O(1) lookup)
const outgoingNeighbors = await this.graphIndex.getNeighbors(result.id, 'out')
hasConnection = outgoingNeighbors.includes(constraints.to)
}
if (constraints.from && !hasConnection) {
// Check if this entity connects FROM the source (O(1) lookup)
const incomingNeighbors = await this.graphIndex.getNeighbors(result.id, 'in')
hasConnection = incomingNeighbors.includes(constraints.from)
}
if (hasConnection) {
filtered.push(result)
}
}
return filtered
}
return results
}
/**
* Convert verbs to relations
*/
private verbsToRelations(verbs: GraphVerb[]): Relation<T>[] {
return verbs.map((v) => ({
id: v.id,
from: v.sourceId,
to: v.targetId,
type: (v.verb || v.type) as VerbType,
weight: v.weight,
metadata: v.metadata,
service: v.metadata?.service as string,
createdAt: typeof v.createdAt === 'number' ? v.createdAt : Date.now()
}))
}
/**
* Embed data into vector representation
* Handles any data type by intelligently converting to string representation
*
* @param data - Any data to convert to vector (string, object, array, etc.)
* @returns Promise that resolves to a numerical vector representation
*
* @example
* // Basic string embedding
* const vector = await brainy.embed('machine learning algorithms')
* console.log('Vector dimensions:', vector.length)
*
* @example
* // Object embedding with intelligent field extraction
* const documentVector = await brainy.embed({
* title: 'AI Research Paper',
* content: 'This paper discusses neural networks...',
* author: 'Dr. Smith',
* category: 'machine-learning'
* })
* // Uses 'content' field for embedding by default
*
* @example
* // Different object field priorities
* // Priority: data > content > text > name > title > description
* const vectors = await Promise.all([
* brainy.embed({ data: 'primary content' }), // Uses 'data'
* brainy.embed({ content: 'main content' }), // Uses 'content'
* brainy.embed({ text: 'text content' }), // Uses 'text'
* brainy.embed({ name: 'entity name' }), // Uses 'name'
* brainy.embed({ title: 'document title' }), // Uses 'title'
* brainy.embed({ description: 'description text' }) // Uses 'description'
* ])
*
* @example
* // Array embedding for batch processing
* const batchVectors = await brainy.embed([
* 'first document',
* 'second document',
* { content: 'third document as object' },
* { title: 'fourth document' }
* ])
* // Returns vector representing all items combined
*
* @example
* // Complex object handling
* const complexData = {
* user: { name: 'John', role: 'developer' },
* project: { name: 'AI Assistant', status: 'active' },
* metrics: { score: 0.95, performance: 'excellent' }
* }
* const vector = await brainy.embed(complexData)
* // Converts entire object to JSON for embedding
*
* @example
* // Pre-computing vectors for performance optimization
* const documents = [
* { id: 'doc1', content: 'Document 1 content...' },
* { id: 'doc2', content: 'Document 2 content...' },
* { id: 'doc3', content: 'Document 3 content...' }
* ]
*
* // Pre-compute all vectors
* const vectors = await Promise.all(
* documents.map(doc => brainy.embed(doc.content))
* )
*
* // Add entities with pre-computed vectors (faster)
* for (let i = 0; i < documents.length; i++) {
* await brainy.add({
* data: documents[i],
* type: NounType.Document,
* vector: vectors[i] // Skip embedding computation
* })
* }
*
* @example
* // Custom embedding for search queries
* async function searchWithCustomEmbedding(query: string) {
* // Enhance query for better matching
* const enhancedQuery = `search: ${query} relevant information`
* const queryVector = await brainy.embed(enhancedQuery)
*
* // Use pre-computed vector for search
* return brainy.find({
* vector: queryVector,
* limit: 10
* })
* }
*
* @example
* // Handling edge cases gracefully
* const edgeCases = await Promise.all([
* brainy.embed(null), // Returns vector for empty string
* brainy.embed(undefined), // Returns vector for empty string
* brainy.embed(''), // Returns vector for empty string
* brainy.embed(42), // Converts number to string
* brainy.embed(true), // Converts boolean to string
* brainy.embed([]), // Empty array handling
* brainy.embed({}) // Empty object handling
* ])
*
* @example
* // Using with similarity comparisons
* const doc1Vector = await brainy.embed('artificial intelligence research')
* const doc2Vector = await brainy.embed('machine learning algorithms')
*
* // Find entities similar to doc1Vector
* const similar = await brainy.find({
* vector: doc1Vector,
* limit: 5
* })
*/
async embed(data: any): Promise<Vector> {
// Handle different data types intelligently
let textToEmbed: string | string[]
if (typeof data === 'string') {
textToEmbed = data
} else if (Array.isArray(data)) {
// Array of items - convert each to string
textToEmbed = data.map(item => {
if (typeof item === 'string') return item
if (typeof item === 'number' || typeof item === 'boolean') return String(item)
if (item && typeof item === 'object') {
// For objects, try to extract meaningful text
if (item.data) return String(item.data)
if (item.content) return String(item.content)
if (item.text) return String(item.text)
if (item.name) return String(item.name)
if (item.title) return String(item.title)
if (item.description) return String(item.description)
// Fallback to JSON for complex objects
try {
return JSON.stringify(item)
} catch {
return String(item)
}
}
return String(item)
})
} else if (data && typeof data === 'object') {
// Single object - extract meaningful text
if (data.data) textToEmbed = String(data.data)
else if (data.content) textToEmbed = String(data.content)
else if (data.text) textToEmbed = String(data.text)
else if (data.name) textToEmbed = String(data.name)
else if (data.title) textToEmbed = String(data.title)
else if (data.description) textToEmbed = String(data.description)
else {
// For complex objects, create a descriptive string
try {
textToEmbed = JSON.stringify(data)
} catch {
textToEmbed = String(data)
}
}
} else if (data === null || data === undefined) {
// Handle null/undefined gracefully
textToEmbed = ''
} else {
// Numbers, booleans, etc - convert to string
textToEmbed = String(data)
}
return this.embedder(textToEmbed)
}
/**
* Warm up the system
*/
private async warmup(): Promise<void> {
// Warm up embedder
await this.embed('warmup')
}
/**
* Setup embedder
*/
private setupEmbedder(): EmbeddingFunction {
// Custom model loading removed - not implemented
// Only 'fast' and 'accurate' model types are supported
return defaultEmbeddingFunction
}
/**
* Setup storage
*/
private async setupStorage(): Promise<BaseStorage> {
// Pass the entire storage config object to createStorage
// This ensures all storage-specific configs (gcsNativeStorage, s3Storage, etc.) are passed through
const storage = await createStorage(this.config.storage as any)
return storage as BaseStorage
}
/**
* Setup index
*
* Phase 2: Uses TypeAwareHNSWIndex for billion-scale optimization
* - 87% memory reduction through separate graphs per entity type
* - 10x faster type-specific queries
* - Automatic type routing
*/
private setupIndex(): HNSWIndex | HNSWIndexOptimized | TypeAwareHNSWIndex {
const indexConfig = {
...this.config.index,
distanceFunction: this.distance
}
// Phase 2: Use TypeAwareHNSWIndex for billion-scale optimization
if (this.config.storage?.type !== 'memory') {
return new TypeAwareHNSWIndex(indexConfig, this.distance, {
storage: this.storage,
useParallelization: true
})
}
return new HNSWIndex(indexConfig as any)
}
/**
* Setup augmentations
*/
private setupAugmentations(): AugmentationRegistry {
const registry = new AugmentationRegistry()
// Register default augmentations with silent mode support
const augmentationConfig = {
...this.config.augmentations,
// Pass silent mode to all augmentations
...(this.config.silent && {
cache: this.config.augmentations?.cache !== false ? { ...this.config.augmentations?.cache, silent: true } : false,
metrics: this.config.augmentations?.metrics !== false ? { ...this.config.augmentations?.metrics, silent: true } : false,
display: this.config.augmentations?.display !== false ? { ...this.config.augmentations?.display, silent: true } : false,
monitoring: this.config.augmentations?.monitoring !== false ? { ...this.config.augmentations?.monitoring, silent: true } : false
})
}
const defaults = createDefaultAugmentations(augmentationConfig)
for (const aug of defaults) {
registry.register(aug)
}
return registry
}
/**
* Normalize and validate configuration
*/
private normalizeConfig(config?: BrainyConfig): Required<BrainyConfig> {
// Validate storage configuration
if (config?.storage?.type && !['auto', 'memory', 'filesystem', 'opfs', 'remote', 's3', 'r2', 'gcs', 'gcs-native', 'azure'].includes(config.storage.type)) {
throw new Error(`Invalid storage type: ${config.storage.type}. Must be one of: auto, memory, filesystem, opfs, remote, s3, r2, gcs, gcs-native, azure`)
}
// Warn about deprecated gcs-native
if (config?.storage?.type === ('gcs-native' as any)) {
console.warn('⚠️ DEPRECATED: type "gcs-native" is deprecated. Use type "gcs" instead.')
console.warn(' This will continue to work but may be removed in a future version.')
}
// Validate storage type/config pairing (now more lenient)
if (config?.storage) {
const storage = config.storage as any
// Warn about legacy gcsStorage config with HMAC keys
if (storage.gcsStorage && storage.gcsStorage.accessKeyId && storage.gcsStorage.secretAccessKey) {
console.warn('⚠️ GCS with HMAC keys (gcsStorage) is legacy. Consider migrating to native GCS (gcsNativeStorage) with ADC.')
}
// No longer throw errors for mismatches - storageFactory now handles this intelligently
// Both 'gcs' and 'gcs-native' can now use either gcsStorage or gcsNativeStorage
}
// Validate model configuration
if (config?.model?.type && !['fast', 'accurate', 'custom'].includes(config.model.type)) {
throw new Error(`Invalid model type: ${config.model.type}. Must be one of: fast, accurate, custom`)
}
// Validate numeric configurations
if (config?.index?.m && (config.index.m < 1 || config.index.m > 128)) {
throw new Error(`Invalid index m parameter: ${config.index.m}. Must be between 1 and 128`)
}
if (config?.index?.efConstruction && (config.index.efConstruction < 1 || config.index.efConstruction > 1000)) {
throw new Error(`Invalid index efConstruction: ${config.index.efConstruction}. Must be between 1 and 1000`)
}
if (config?.index?.efSearch && (config.index.efSearch < 1 || config.index.efSearch > 1000)) {
throw new Error(`Invalid index efSearch: ${config.index.efSearch}. Must be between 1 and 1000`)
}
// Auto-detect distributed mode based on environment and configuration
const distributedConfig = this.autoDetectDistributed(config?.distributed)
return {
storage: config?.storage || { type: 'auto' },
model: config?.model || { type: 'fast' },
index: config?.index || {},
cache: config?.cache ?? true,
augmentations: config?.augmentations || {},
distributed: distributedConfig as any, // Type will be fixed when used
warmup: config?.warmup ?? false,
realtime: config?.realtime ?? false,
multiTenancy: config?.multiTenancy ?? false,
telemetry: config?.telemetry ?? false,
verbose: config?.verbose ?? false,
silent: config?.silent ?? false,
// New performance options with smart defaults
disableAutoRebuild: config?.disableAutoRebuild ?? false, // false = auto-decide based on size
disableMetrics: config?.disableMetrics ?? false,
disableAutoOptimize: config?.disableAutoOptimize ?? false,
batchWrites: config?.batchWrites ?? true,
maxConcurrentOperations: config?.maxConcurrentOperations ?? 10
}
}
/**
* Rebuild indexes if there's existing data but empty indexes
*/
/**
* Rebuild indexes from persisted data if needed (v3.35.0+)
*
* FIXES FOR CRITICAL BUGS:
* - Bug #1: GraphAdjacencyIndex rebuild never called ✅ FIXED
* - Bug #2: Early return blocks recovery when count=0 ✅ FIXED
* - Bug #4: HNSW index has no rebuild mechanism ✅ FIXED
*
* Production-grade rebuild with:
* - Handles millions of entities via pagination
* - Smart threshold-based decisions (auto-rebuild < 1000 items)
* - Progress reporting for large datasets
* - Parallel index rebuilds for performance
* - Robust error recovery (continues on partial failures)
*/
private async rebuildIndexesIfNeeded(): Promise<void> {
try {
// Check if auto-rebuild is explicitly disabled
if (this.config.disableAutoRebuild === true) {
if (!this.config.silent) {
console.log('⚡ Auto-rebuild explicitly disabled via config')
}
return
}
// OPTIMIZATION: Instant check - if index already has data, skip immediately
// This gives 0s startup for warm restarts (vs 50-100ms of async checks)
if (this.index.size() > 0) {
if (!this.config.silent) {
console.log(
`✅ Index already populated (${this.index.size().toLocaleString()} entities) - 0s startup!`
)
}
return
}
// BUG #2 FIX: Don't trust counts - check actual storage instead
// Counts can be lost/corrupted in container restarts
const entities = await this.storage.getNouns({ pagination: { limit: 1 } })
const totalCount = entities.totalCount || 0
// If storage is truly empty, no rebuild needed
if (totalCount === 0 && entities.items.length === 0) {
return
}
// Intelligent decision: Auto-rebuild only for small datasets
// For large datasets, use lazy loading for optimal performance
const AUTO_REBUILD_THRESHOLD = 1000 // Only auto-rebuild if < 1000 items
// Check if indexes need rebuilding
const metadataStats = await this.metadataIndex.getStats()
const hnswIndexSize = this.index.size()
const graphIndexSize = await this.graphIndex.size()
const needsRebuild =
metadataStats.totalEntries === 0 ||
hnswIndexSize === 0 ||
graphIndexSize === 0 ||
this.config.disableAutoRebuild === false // Explicitly enabled
if (!needsRebuild) {
// All indexes already populated, no rebuild needed
return
}
// Small dataset: Rebuild all indexes for best performance
if (totalCount < AUTO_REBUILD_THRESHOLD || this.config.disableAutoRebuild === false) {
if (!this.config.silent) {
console.log(
this.config.disableAutoRebuild === false
? '🔄 Auto-rebuild explicitly enabled - rebuilding all indexes from persisted data...'
: `🔄 Small dataset (${totalCount} items) - rebuilding all indexes from persisted data...`
)
}
// Rebuild all 3 indexes in parallel for performance
// Indexes load their data from storage (no recomputation)
const rebuildStartTime = Date.now()
await Promise.all([
metadataStats.totalEntries === 0 ? this.metadataIndex.rebuild() : Promise.resolve(),
hnswIndexSize === 0 ? this.index.rebuild() : Promise.resolve(),
graphIndexSize === 0 ? this.graphIndex.rebuild() : Promise.resolve()
])
const rebuildDuration = Date.now() - rebuildStartTime
if (!this.config.silent) {
console.log(
`✅ All indexes rebuilt in ${rebuildDuration}ms:\n` +
` - Metadata: ${await this.metadataIndex.getStats().then(s => s.totalEntries)} entries\n` +
` - HNSW Vector: ${this.index.size()} nodes\n` +
` - Graph Adjacency: ${await this.graphIndex.size()} relationships\n` +
` 💡 Indexes loaded from persisted storage (no recomputation)`
)
}
} else {
// Large dataset: Use lazy loading for fast startup
if (!this.config.silent) {
console.log(`⚡ Large dataset (${totalCount} items) - using lazy loading for optimal startup`)
console.log('💡 Indexes will build automatically as you query the system')
}
}
} catch (error) {
console.warn('Warning: Could not rebuild indexes:', error)
// Don't throw - allow system to start even if rebuild fails
}
}
/**
* Close and cleanup
*/
async close(): Promise<void> {
// Shutdown augmentations
const augs = this.augmentationRegistry.getAll()
for (const aug of augs) {
if ('shutdown' in aug && typeof aug.shutdown === 'function') {
await aug.shutdown()
}
}
// Restore console methods if silent mode was enabled
if (this.config.silent && this.originalConsole) {
console.log = this.originalConsole.log as typeof console.log
console.info = this.originalConsole.info as typeof console.info
console.warn = this.originalConsole.warn as typeof console.warn
console.error = this.originalConsole.error as typeof console.error
this.originalConsole = undefined
}
// Storage doesn't have close in current interface
// We'll just mark as not initialized
this.initialized = false
}
/**
* Intelligently auto-detect distributed configuration
* Zero-config: Automatically determines best distributed settings
*/
private autoDetectDistributed(config?: BrainyConfig['distributed']): BrainyConfig['distributed'] {
// If explicitly disabled, respect that
if (config?.enabled === false) {
return config
}
// Auto-detect based on environment variables (common in production)
const envEnabled = process.env.BRAINY_DISTRIBUTED === 'true' ||
process.env.NODE_ENV === 'production' ||
process.env.CLUSTER_SIZE ||
process.env.KUBERNETES_SERVICE_HOST // Running in K8s
// Auto-detect based on storage type (S3/R2/GCS implies distributed)
const storageImpliesDistributed =
this.config?.storage?.type === 's3' ||
this.config?.storage?.type === 'r2' ||
this.config?.storage?.type === 'gcs'
// If not explicitly configured but environment suggests distributed
if (!config && (envEnabled || storageImpliesDistributed)) {
return {
enabled: true,
nodeId: process.env.HOSTNAME || process.env.NODE_ID || `node-${Date.now()}`,
nodes: process.env.BRAINY_NODES?.split(',') || [],
coordinatorUrl: process.env.BRAINY_COORDINATOR || undefined,
shardCount: parseInt(process.env.BRAINY_SHARDS || '64'),
replicationFactor: parseInt(process.env.BRAINY_REPLICAS || '3'),
consensus: process.env.BRAINY_CONSENSUS as any || 'raft',
transport: process.env.BRAINY_TRANSPORT as any || 'http'
}
}
// Merge with provided config, applying intelligent defaults
return config ? {
...config,
nodeId: config.nodeId || process.env.HOSTNAME || `node-${Date.now()}`,
shardCount: config.shardCount || 64,
replicationFactor: config.replicationFactor || 3,
consensus: config.consensus || 'raft',
transport: config.transport || 'http'
} : undefined
}
/**
* Setup distributed components with zero-config intelligence
*/
private setupDistributedComponents(): void {
const distConfig = this.config.distributed
if (!distConfig?.enabled) return
console.log('🌍 Initializing distributed mode:', {
nodeId: distConfig.nodeId,
shards: distConfig.shardCount,
replicas: distConfig.replicationFactor
})
// Initialize coordinator for consensus
this.coordinator = new DistributedCoordinator({
nodeId: distConfig.nodeId,
address: distConfig.coordinatorUrl?.split(':')[0] || 'localhost',
port: parseInt(distConfig.coordinatorUrl?.split(':')[1] || '8080'),
nodes: distConfig.nodes
})
// Start the coordinator to establish leadership
this.coordinator.start().catch(err => {
console.warn('Coordinator start failed (will retry on init):', err.message)
})
// Initialize shard manager for data distribution
this.shardManager = new ShardManager({
shardCount: distConfig.shardCount,
replicationFactor: distConfig.replicationFactor,
virtualNodes: 150, // Optimal for consistent distribution
autoRebalance: true
})
// Initialize cache synchronization
this.cacheSync = new CacheSync({
nodeId: distConfig.nodeId!,
syncInterval: 1000
} as any)
// Initialize read/write separation if we have replicas
// Note: Will be properly initialized after coordinator starts
if (distConfig.replicationFactor && distConfig.replicationFactor > 1) {
// Defer creation until coordinator is ready
setTimeout(() => {
this.readWriteSeparation = new ReadWriteSeparation(
{
nodeId: distConfig.nodeId!,
consistencyLevel: 'eventual',
role: 'replica', // Start as replica, will promote if leader
syncInterval: 5000
},
this.coordinator!,
this.shardManager!,
this.cacheSync!
)
}, 100)
}
}
/**
* Pass distributed components to storage adapter
*/
private async connectDistributedStorage(): Promise<void> {
if (!this.config.distributed?.enabled) return
// Check if storage supports distributed operations
if ('setDistributedComponents' in this.storage) {
(this.storage as any).setDistributedComponents({
coordinator: this.coordinator,
shardManager: this.shardManager,
cacheSync: this.cacheSync,
readWriteSeparation: this.readWriteSeparation
})
console.log('✅ Distributed storage connected')
}
}
}
// Re-export types for convenience
export * from './types/brainy.types.js'
export { NounType, VerbType } from './types/graphTypes.js'