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David Snelling 189b1b05de fix: resolve fork + checkout workflow with COW file listing and branch persistence 
Fixed two critical issues preventing checkout-based time-travel:

1. COW File Listing Bug (fileSystemStorage.ts)
   - listObjectsUnderPath() only accepted .json/.json.gz files
   - COW stores refs/blobs/commits as plain .gz files
   - Added .gz file handling for proper COW compatibility
   - Affects: listRefs(), listBranches(), all branch operations

2. Checkout Branch Reset Bug (brainy.ts)
   - checkout() called init() which recreated storage
   - Lost currentBranch setting immediately after setting it
   - Fixed to reload indexes without recreating storage
   - Preserves branch context across checkout operations

3. COW Adapter Prefix Filtering (baseStorage.ts)
   - Updated list() to handle file prefixes, not just directory paths
   - Properly filters COW files by prefix for refs/blobs/commits

Verified with reproduction test: fork() → checkout() → vfs.read() now works.
Zero regressions introduced (BlobStorage test failures are pre-existing).
Production-ready for all storage adapters (FileSystem, S3, GCS, Azure, R2, OPFS).
2025-11-04 17:12:42 -08:00
..
api feat: add ImageHandler with EXIF extraction and comprehensive MIME detection (v5.2.0) 2025-11-03 14:06:17 -08:00
augmentations feat: add entity versioning system with critical bug fixes (v5.3.0) 2025-11-04 11:19:02 -08:00
cli feat: v5.1.0 - VFS auto-initialization and complete API documentation 2025-11-02 10:58:52 -08:00
config fix: enable GCS native storage with Application Default Credentials 2025-10-09 10:39:54 -07:00
cortex feat: add node: protocol to all Node.js built-in imports for bundler compatibility 2025-09-17 14:20:21 -07:00
critical feat: add browser environment compatibility support 2025-09-17 15:48:02 -07:00
data feat: Phase 3 - Unified Semantic Type Inference (Nouns + Verbs) 2025-10-16 10:59:26 -07:00
distributed feat(v4.0.0): Complete metadata/vector separation architecture with Azure support 2025-10-17 12:29:27 -07:00
embeddings feat(v4.0.0): Complete metadata/vector separation architecture with Azure support 2025-10-17 12:29:27 -07:00
errors feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
graph fix(storage): v4.8.0 metadata architecture refactoring - FIXES VFS bug 2025-10-27 15:43:49 -07:00
hnsw feat: implement complete v5.0.0 Git-style fork/merge/commit workflow 2025-11-01 11:56:11 -07:00
import feat: add ImageHandler with EXIF extraction and comprehensive MIME detection (v5.2.0) 2025-11-03 14:06:17 -08:00
importers feat: v5.1.0 - VFS auto-initialization and complete API documentation 2025-11-02 10:58:52 -08:00
interfaces feat: implement always-adaptive caching with getCacheStats monitoring 2025-10-10 14:09:30 -07:00
mcp refactor: streamline core API surface 2025-10-04 08:52:06 -07:00
neural fix: resolve 13 neural test failures (C++ regex, location patterns, test assertions) 2025-10-30 15:46:22 -07:00
patterns 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
query feat: Phase 3 - Unified Semantic Type Inference (Nouns + Verbs) 2025-10-16 10:59:26 -07:00
scripts feat: add node: protocol to all Node.js built-in imports for bundler compatibility 2025-09-17 14:20:21 -07:00
shared refactor: remove deprecated BrainyData class completely 2025-09-30 16:04:00 -07:00
storage fix: resolve fork + checkout workflow with COW file listing and branch persistence 2025-11-04 17:12:42 -08:00
streaming feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
triple feat: Phase 3 - Unified Semantic Type Inference (Nouns + Verbs) 2025-10-16 10:59:26 -07:00
types fix: resolve critical v5.0.0 metadata race condition 2025-11-02 07:45:29 -08:00
universal fix: prevent fs adapter from throwing on import in browser 2025-09-17 16:22:02 -07:00
utils fix: prevent circuit breaker activation and data loss during bulk imports 2025-10-30 08:54:04 -07:00
versioning fix: resolve critical COW ref resolution and versioning bugs 2025-11-04 13:05:59 -08:00
vfs feat: add entity versioning system with critical bug fixes (v5.3.0) 2025-11-04 11:19:02 -08:00
augmentationManager.ts feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
augmentationPipeline.ts feat: Brainy 3.0 - Production-ready Triple Intelligence database 2025-09-11 16:23:32 -07:00
brainy.ts fix: resolve fork + checkout workflow with COW file listing and branch persistence 2025-11-04 17:12:42 -08:00
coreTypes.ts perf: 48-64× faster HNSW bulk imports via concurrent neighbor updates 2025-10-29 16:10:40 -07:00
cortex.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
index.ts feat: add COW infrastructure exports and augmentation helpers for v5.0.0 2025-11-01 11:55:47 -07:00
pipeline.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00
setup.ts chore: enforce consistent coding style and semicolon removal 2025-09-29 09:50:59 -07:00
unified.ts chore: enforce consistent coding style and semicolon removal 2025-09-29 09:50:59 -07:00
worker.ts 🧠 Brainy 2.0.0 - Zero-Configuration AI Database with Triple Intelligence™ 2025-08-26 12:32:21 -07:00