Commit graph

59 commits

Author SHA1 Message Date
a84aaa7fad feat: Add augmentation management as the 8th unified method! 🧩
BREAKING CHANGE: Brainy 1.0 now has 8 unified methods (was 7)

Added complete augmentation management system:
- brain.register(augmentation) - Register custom augmentations
- brain.unregister(name) - Remove augmentations
- Existing enable/disable/list methods remain

CLI augmentation commands:
- brainy augment list - Show all augmentations
- brainy augment enable/disable - Toggle augmentations
- brainy augment register - Load custom augmentations
- brainy augment enable-type/disable-type - Bulk operations

Documentation:
- Created UNIFIED-API.md explaining all 8 methods
- Shows complete before/after transformation
- Includes augmentation pipeline architecture
- Examples for creating custom augmentations

The unified API is now complete:
1. add() - Smart data addition
2. search() - Unified search
3. import() - Bulk import
4. addNoun() - Typed entities
5. addVerb() - Relationships
6. update() - Smart updates
7. delete() - Soft delete
8. register() - Augmentations  NEW!

This completes the vision: ONE way to do everything!
2025-08-14 12:19:34 -07:00
718a963447 🚀 Brainy 1.0.0-rc.1 - Complete Unified API Implementation (#5)
* feat: Complete Brainy 1.0 Great Cleanup

🎯 THE GREAT CLEANUP - Making Brainy Beautiful

BREAKING CHANGES:
- Removed addSmart() method (use add() - it's smart by default)
- Removed duplicate Pipeline classes (consolidated into ONE Cortex)
- Removed 40+ CLI commands (now just 5 clean commands)

 WHAT'S DONE:
- Delete duplicate files: sequentialPipeline.ts, cortex-legacy.ts, serviceIntegration.ts
- Consolidated into ONE Cortex class (the orchestrator)
- Pipeline class now delegates to Cortex (backward compatibility)
- Clean CLI: add, import, search, status, help (ONE way to do everything)
- Interactive mode for beginners

📈 RESULTS:
- 5 CLI commands (was 40+)
- 1 Pipeline system (was 3+)
- Clean, obvious naming
- Beautiful user experience

This achieves the vision: ONE way to do everything, elegant and powerful.

* fix: Restore essential CLI commands and remove backward compatibility

 IMPROVEMENTS:
- Remove Pipeline delegation complexity - Pipeline IS Cortex now
- Restore essential commands: config, cloud, migrate
- Keep core clean: add, import, search, status, help
- Interactive help updated with all options

🎯 FINAL CLI (8 commands):
- Core: add, import, search, status, help
- Essential: config, cloud, migrate

 NO FUNCTIONALITY LOST:
- Zero-config and dynamic adaptations intact
- All storage adapters working
- Premium Brain Cloud integration restored
- Migration tools available

Result: Perfect balance of simplicity and functionality

* feat: Enhance status command with comprehensive statistics display

 ENHANCED STATUS COMMAND:
- Full integration with brainyData.getStatistics()
- Beautiful, organized display of all statistics
- Three modes: default (comprehensive), --simple (quick), --verbose (raw JSON)

📊 STATISTICS DISPLAYED:
- Core Database: items, nouns, verbs, documents
- Storage Information: type, size, location
- Performance Metrics: query times, cache hit rates
- Vector Index: dimensions, vector count, index size
- Memory Usage: heap, RSS breakdown
- Active Augmentations: with descriptions
- Configuration: with sensitive data hidden
- Raw JSON option for developers

🎯 USAGE:
- brainy status (comprehensive view)
- brainy status --simple (quick overview)
- brainy status --verbose (everything + raw JSON)

Perfect for monitoring brain health and performance!

* feat: Add per-service statistics and field discovery to CLI

🎯 ENHANCED STATISTICS DISPLAY:
- Show per-service breakdown of nouns, verbs, metadata
- Display serviceBreakdown from getStatistics() properly
- Beautiful formatting for multi-service environments

🔍 FIELD DISCOVERY FOR ADVANCED SEARCH:
- New section in 'brainy status' shows available filter fields
- Added --fields option to search command
- Usage examples provided for complex filtering
- Integrates with getFilterFields() method

📊 USAGE EXAMPLES:
- brainy status (shows per-service stats + available fields)
- brainy search 'query' --fields (field discovery)
- brainy search 'query' --filter '{"type":"person"}' (advanced filtering)

Perfect for developers doing complex queries and multi-service deployments!

* feat: Restore and enhance brainy chat with multi-model AI support

🎯 RESTORED CHAT FUNCTIONALITY:
- Complete brainy chat command with rich options
- Interactive mode with session management
- Chat history search and session switching
- Auto-discovery of previous sessions

🤖 MULTI-MODEL AI INTEGRATION:
- Local models: Ollama/LLaMA (default)
- OpenAI: GPT-3.5/GPT-4 support
- Claude: Anthropic integration
- Custom models: configurable base URLs

💬 RICH CHAT FEATURES:
- Session management: list, switch, resume
- History: view previous conversations
- Search: find messages across all sessions
- Context-aware: uses your brain data for responses

🔧 USAGE EXAMPLES:
- brainy chat (interactive mode)
- brainy chat 'question' (single message)
- brainy chat --list (show sessions)
- brainy chat --model openai --api-key sk-... (OpenAI)
- brainy chat --model claude --api-key sk-ant-... (Claude)

Perfect for talking to your data with any AI model!

* feat: Complete Brainy 1.0.0-rc.1 unified API implementation

- Implement 7 core unified API methods (add, search, import, addNoun, addVerb, update, delete)
- Add universal encryption system with encryptData/decryptData methods
- Add container deployment support with model preloading
- Implement soft delete by default for better performance
- Add searchVerbs() and getNounWithVerbs() for graph traversal
- Reduce package size by 16% despite major feature additions
- Create comprehensive CHANGELOG.md and MIGRATION.md
- Consolidate CLI from 40+ to 9 clean commands
- All scaling optimizations preserved and enhanced

BREAKING CHANGES:
- addSmart() method removed (use add() - smart by default)
- CLI commands consolidated and renamed
- Pipeline classes unified into single Cortex class

This is the complete 1.0 release candidate with all planned features implemented and tested.
2025-08-14 11:27:22 -07:00
7fb34a0b1d feat: Add web UI mode to brainy chat CLI
- Added --ui flag for terminal vs web coordination interface
- Integrated Brain Cloud coordination server support
- Enhanced CLI with authentication checks for premium features
- Updated cortex legacy handler for better error handling
- Improved default augmentations configuration
- Version bump to support new features
2025-08-12 18:19:38 -07:00
8449b05db9 feat: implement standard noun/verb types and processing transparency
- Use NounType.Message and VerbType.Precedes for chat memory structure
- Add explicit addSmart() method for optional AI processing
- Rename CortexSense → NeuralImport for clearer augmentation naming
- Update augmentation pipeline with universal enable/disable controls
2025-08-12 11:50:08 -07:00
abc17397b1 feat: Remove dangerous getAllNouns/getAllVerbs methods, add safe pagination
BREAKING CHANGE: Removed getAllNouns() and getAllVerbs() from StorageAdapter interface
These methods could cause expensive full scans on cloud storage (S3/R2) leading to
high costs and performance issues. Replaced with safe paginated methods.

Changes:
- Remove getAllNouns/getAllVerbs from StorageAdapter interface and implementations
- Add internal optimization methods for intelligent preloading when safe
- Fix OPFS storage file naming consistency (.json extension)
- Fix S3 high-volume mode detection thresholds (was too aggressive)
- Fix TypeScript compilation errors with async methods
- Update all tests to use paginated methods

Performance:
- Add smart dataset size detection for automatic optimization
- Maintain all internal performance optimizations through safe preloading
- Only preload data in read-only mode or when dataset is small (<10k entities)

Fixes:
- Fix intelligent verb scoring tests metadata structure
- Fix S3 storage getVerbsBySource/Target/Type methods
- Fix memory usage in search operations using pagination

Docs:
- Add comprehensive storage architecture documentation
- Document known bash redirection issue
- Update README with architecture doc link

All affected tests passing
2025-08-10 16:25:12 -07:00
93804be354 feat: add universal adapters for browser compatibility
- Create universal adapters for cross-platform support (browser/Node/serverless)
- Replace Node.js-specific imports with universal implementations
- Add OPFS support for browser persistent storage
- Maintain same BrainyData interface across all environments
- Enable real Brainy usage in browser console UI
- Keep package size optimized (no bloat)

Universal adapters in /src/universal/:
- uuid.ts: Cross-platform UUID generation
- crypto.ts: Browser/Node crypto operations
- fs.ts: OPFS/FileSystem/Memory storage adapter
- path.ts: Universal path operations
- events.ts: EventEmitter compatibility layer

This enables 'write once, run anywhere' for Brainy while maintaining
the exact same API. No breaking changes to existing code.
2025-08-08 15:22:38 -07:00
13010c2312 feat: add comprehensive throttling detection and metrics collection
- Add throttling metrics to StatisticsData interface with storage, operation, and service-level tracking
- Implement base class throttling detection for all storage adapters to inherit
- Track throttling events, delays, retries, and failures with exponential backoff (1s-30s)
- Add intelligent backoff to prevent socket exhaustion and reduce API costs
- Extend StatisticsCollector to track and report throttling metrics
- Update S3CompatibleStorage to use base class throttling with S3-specific detection
- Include throttling metrics in BrainyData.getStatistics() output
- Add comprehensive test suite for throttling detection and metrics
- Create detailed documentation for throttling metrics feature
- Zero performance impact: <0.01ms overhead, <2KB memory, no additional network calls

BREAKING CHANGES: None - throttling metrics are automatically available in v0.58+
2025-08-08 07:14:10 -07:00
27ce6c242d feat: release v0.56.0 - Cortex CLI complete implementation & TypeScript fixes
- Complete Cortex CLI command center with all features
- Fix all TypeScript compilation errors for clean build
- Add Neural Import as default SENSE augmentation (awaiting full integration)
- Update CHANGELOG with comprehensive v0.56.0 notes
- Add cortex.d.ts type definitions
- Fix error handling for unknown error types
- Fix emoji and color properties in terminal output
- Published to npm and created GitHub release
2025-08-07 19:59:19 -07:00
d5386a3643 feat: add Cortex CLI, augmentation system, and enterprise features
Major enhancements to Brainy vector + graph database:

Core Features (FREE):
- Cortex CLI: Complete command center for database management
- Neural Import: AI-powered data understanding and entity extraction
- Augmentation Pipeline: 8-stage extensible processing system
- Brainy Chat: Natural language interface to query data
- Performance monitoring and health diagnostics
- Backup/restore with compression and encryption
- Webhook system for enterprise integrations

Infrastructure:
- Clean separation of core (open source) and premium features
- Lazy-loaded augmentations with zero performance impact
- Comprehensive documentation for all new features
- Full TypeScript support with proper interfaces

Performance:
- Zero impact on core operations (proven with benchmarks)
- 2-3% performance improvement from better caching
- Package size remains at 643KB (no bloat)

Security:
- Removed sensitive files from Git history
- Added .gitignore rules for PDFs and private files
- Premium features in separate private repository

Premium Features (separate repository):
- Quantum Vault connectors (Notion, Salesforce, Slack, Asana)
- Licensing system for premium augmentations
- Revenue projections and business model

This commit maintains 100% backward compatibility while adding
powerful enterprise features as progressive enhancements.
2025-08-07 19:33:03 -07:00
ce677f441d chore: simplify build for v0.55.0 release
- Temporarily remove Cortex CLI dependencies to fix build
- Keep core coordination methods in BrainyData
- Cortex CLI will be added in v0.56 as separate package
2025-08-07 13:55:42 -07:00
89d6d1e8ce feat: add Cortex - complete CLI command center for configuration and coordination
- New CLI tool for managing Brainy databases
- Encrypted configuration management (replaces .env files)
- Distributed storage migration coordination
- Advanced MongoDB-style query interface
- Backup/restore, health checks, statistics
- Interactive shell mode
- One-line integration: await brainy.loadEnvironment()
- Full documentation and migration guides
- Node.js only (browser safe with environment detection)

BREAKING CHANGE: Package size increased ~250KB due to CLI dependencies
2025-08-07 13:53:17 -07:00
1b265e8c42 feat(storage): fix critical socket exhaustion during metadata reading
CRITICAL ISSUE FIXED: Service initialization was failing due to socket exhaustion
when reading metadata for 1400+ items during index rebuild

Changes:
- Add batch metadata reading to prevent 2000+ concurrent requests
- Implement strict concurrency control (3 max concurrent requests)
- Add proper yielding between batches to prevent event loop blocking
- Reduce batch sizes during initialization (50 → 25 items per batch)
- Add getMetadataBatch() and getVerbMetadataBatch() methods to S3 storage
- Update StorageAdapter interface with batch methods
- Add production environment auto-detection for smart logging
- Auto-cleanup legacy /index folder during initialization

Socket usage: Reduced from 1400+ concurrent to 3 max concurrent

Expected production result:
- Service initialization will complete successfully
- firehoseServiceInitialized: true
- Data collection will begin normally
- No more socket exhaustion errors (100 socket limit exceeded)

Fixes: #socket-exhaustion
Breaking: None - backward compatible with fallback modes
2025-08-07 11:46:07 -07:00
c8a239aa8d feat: complete non-blocking metadata indexing solution
BREAKING: Fixes critical event loop blocking during metadata operations

## Event Loop Blocking Fixes
- Add setImmediate() yields in metadata rebuild every 10 items
- Add event loop yields in addToIndex() every 5 fields
- Add event loop yields in flush() operations with smaller batches
- Reduce flush threshold from 50 to 10 for more frequent non-blocking flushes
- Add progress logging for rebuild operations with event loop yields

## Performance Testing Results
- Single item addition: 308ms, max event loop delay 20ms  NO BLOCKING
- 200 items in batches of 10: max event loop delay 172ms  NO BLOCKING
- 200 items in batches of 50: max event loop delay 700ms+  BLOCKS

## bluesky-package Solution
**Root Cause:** Large concurrent batches (50+ operations) overwhelm metadata indexing
**Solution:** Process data in smaller batches (≤10 concurrent operations) with yields

**Recommended Pattern for bluesky-package:**
```javascript
// Instead of Promise.all([...hundreds of operations])
const BATCH_SIZE = 10
for (let i = 0; i < items.length; i += BATCH_SIZE) {
  const batch = items.slice(i, i + BATCH_SIZE)
  await Promise.all(batch.map(item => brainy.add(item)))
  await new Promise(resolve => setImmediate(resolve)) // Yield
}
```

## Statistics Caching (from previous commits)
- 5-minute statistics caching eliminates expensive S3 lookups
- getStorageStatus() uses estimation vs full bucket scans
- 90%+ reduction in S3 API calls reducing socket pressure

Combined solution addresses both root causes:
1. Event loop blocking fixed with proper yields and batch sizing
2. Socket exhaustion fixed with statistics caching and reduced API calls
2025-08-07 11:07:11 -07:00
18c1fa8937 fix(critical): enable metadata indexing in write-only mode + force buffering activation
🚨 CRITICAL FIXES:

1. METADATA INDEXING IN WRITE-ONLY MODE:
   - Was: if (\!this.writeOnly) - DISABLED metadata indexing for bluesky/github packages\!
   - Now: if (\!this.readOnly) - ENABLES metadata indexing in write-only mode
   - Fixes all conditional checks to allow write-only mode indexing
   - Write-only mode NEEDS metadata indices for search capability\!

2. STATISTICS FOLDER LOCATION:
   - Statistics now go to _system/ folder instead of legacy _index/
   - Uses systemPrefix instead of indexPrefix for new statistics

3. FORCE BUFFERING ACTIVATION:
   - Threshold lowered from 1 to 0 (immediate activation)
   - Added 'true' condition to force enable high-volume mode
   - This should guarantee buffering activation in production

IMPACT:
- bluesky-package and github-package will now CREATE metadata indices
- _metadata/noun/ and _metadata/verb/ folders will appear in S3
- Metadata filtering and field searches will work in write-only mode
- Statistics will be in proper _system/ folder structure
- Buffering should activate immediately (guaranteed)

This fixes the missing S3 folder structure and search capabilities.
2025-08-07 10:11:40 -07:00
06f502ec4a feat: add direct storage access in write-only mode for efficient deduplication
Enables ID-based lookups in write-only mode without loading search indexes, solving the fundamental conflict between write-only optimization and deduplication needs.

Key Features:
- New allowDirectReads configuration option
- Direct storage methods: has(), exists(), getMetadata(), getBatch()
- Enhanced get() and getVerb() support in write-only mode
- Smart operation separation (storage vs. search operations)

Use Cases:
- Bluesky services: Avoid redundant profile API calls
- GitHub packages: Efficient user processing with existence checks
- General writer services: Smart deduplication without search overhead

Performance Benefits:
- 50-100% reduction in external API calls
- No search index memory usage
- Fast direct storage lookups
- Optimal for high-throughput data ingestion

Configuration:
const brainy = new BrainyData({
  writeOnly: true,        // Skip search index loading
  allowDirectReads: true  // Enable direct ID lookups
})

Includes comprehensive tests (26/26 passing), real-world demo, and complete README documentation with configuration examples.
2025-08-07 07:57:41 -07:00
880b8f74e3 feat: add intelligent verb scoring system for automatic relationship weighting
Add a new COGNITION augmentation that automatically generates intelligent weight and confidence scores for verb relationships using semantic analysis, frequency patterns, and temporal factors.

Key features:
- Semantic proximity scoring using entity embeddings
- Frequency amplification for repeated relationships
- Temporal decay for time-based relationship strength
- Learning and adaptation from user feedback
- Zero-configuration setup (just enable: true)
- Off by default to maintain backward compatibility

Integration points:
- New intelligentVerbScoring config in BrainyDataConfig
- Automatic scoring in addVerb() when weight not provided
- Feedback methods: provideFeedbackForVerbScoring(), getVerbScoringStats()
- Export/import learning data for persistence
- Full augmentation pipeline integration

Documentation:
- Comprehensive usage guide at /docs/guides/intelligent-verb-scoring.md
- Examples for simple and advanced configurations
- Learning workflows and troubleshooting

Tests:
- Complete test coverage for all features
- Configuration, semantic scoring, learning, and error handling
- Performance and integration testing

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-08-06 17:47:11 -07:00
2dc909909a feat: v0.49 - Filter discovery API, remove deprecated methods, improve performance
BREAKING CHANGES:
- Removed deprecated getAllNouns() and getAllVerbs() methods
- All internal usage migrated to pagination-based methods

New Features:
- Filter Discovery API:
  - getFilterValues(field): Get all available values for a field
  - getFilterFields(): Get all filterable fields
  - Enables dynamic filter UI generation with O(1) field discovery
- Hybrid metadata indexing with field-level indexes
- Adaptive auto-flush for optimal performance
- LRU caching for metadata indexes

Improvements:
- Fixed ENAMETOOLONG errors from vector-based filenames
- Safe filename generation using hash-based approach
- Scalable chunked value storage for millions of entries
- Performance optimization with adaptive flush thresholds
- Added support for $includes operator in metadata filters

Technical:
- Replaced vector-based filenames with safe hash approach
- Implemented MetadataIndexCache with existing SearchCache pattern
- Field indexes enable O(1) filter discovery
- Adaptive flush based on performance metrics (20-200 entries)
- All tests passing with improved metadata filtering
2025-08-06 14:39:33 -07:00
1a4f035ffc fix: correct typo in README major updates section
🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-08-06 12:29:32 -07:00
d2ddb9199e feat: add comprehensive per-service statistics tracking
Add full support for tracking and analyzing data by service in multi-tenant deployments.

## Features Added

- **Service Statistics Tracking**: Track nouns, verbs, and metadata counts per service
- **Service Activity Monitoring**: Track first/last activity timestamps and operation counts
- **New API Methods**:
  - `listServices()`: List all services with their statistics and status
  - `getServiceStatistics(service)`: Get detailed stats for a specific service
  - Enhanced `getStatistics()` with service filtering and breakdown

- **Service Filtering**: Filter search results and queries by service
- **Storage Enhancements**: BaseStorageAdapter tracks service activity with timestamps
- **Type Definitions**: Added ServiceStatistics interface and extended StatisticsData

## Implementation Details

- Services automatically tracked via defaultService config or per-operation override
- Service status detection (active/inactive/read-only) based on activity
- Memory-efficient tracking at statistics level, not per noun/verb
- Backward compatible - existing data tracked under 'default' service

## Documentation

- Comprehensive guide in docs/guides/per-service-statistics.md
- Examples for multi-tenant apps, health monitoring, and auditing
- API reference and migration guide included

## Testing

- Full test suite in tests/service-statistics.test.ts
- Coverage of all new methods and filtering capabilities

This enables better observability, debugging, and management of multi-service Brainy deployments, addressing the need to track individual service performance when multiple services share storage.
2025-08-06 10:17:28 -07:00
e838327a22 feat: add frozen flag for complete immutability and simplify README examples
- Add frozen flag to separate data immutability from performance optimizations
  - readOnly: prevents data mutations but allows index optimizations (default behavior)
  - frozen: prevents ALL changes including statistics and index updates
  - Smart default: frozen=false when readOnly=true for optimal performance

- Add comprehensive documentation for read-only and frozen modes
  - Created docs/guides/readonly-frozen-modes.md with detailed guide
  - Added examples for compliance, forensics, and testing use cases
  - Updated all documentation indexes with new guide links

- Simplify README.md to emphasize unified API
  - Clearer demonstration that same code works everywhere
  - Simplified framework examples showing consistent API
  - Better noun/verb examples for entities and relationships
  - Collapsible sections for cloud platform examples
  - Environment auto-detection table

- Add tests for frozen flag behavior
  - Test readOnly without frozen (allows optimizations)
  - Test frozen mode (complete immutability)
  - Test dynamic mode switching

BREAKING CHANGE: readOnly behavior changed - now allows optimizations by default.
To get old behavior (complete immutability), use readOnly: true with frozen: true.
2025-08-06 09:52:45 -07:00
f898f0ce7b feat\!: migrate from TensorFlow.js to Transformers.js with ONNX Runtime
BREAKING CHANGE: Complete migration from TensorFlow.js to Transformers.js for embedding generation

This is a major architectural change that replaces TensorFlow.js (USE model) with Transformers.js (all-MiniLM-L6-v2) for significantly improved performance and reduced complexity.

Key Changes:
- Replace TensorFlow.js Universal Sentence Encoder with Transformers.js all-MiniLM-L6-v2
- Reduce model size from 525MB to 87MB (83% reduction)
- Reduce embedding dimensions from 512 to 384 (faster distance calculations)
- Remove TensorFlow.js Float32Array patching (caused ONNX conflicts)
- Implement smart bundled model detection for offline operation
- Add explicit model download script for Docker deployments
- Remove complex environment variables in favor of simple configuration
- Update all distance functions to use optimized pure JavaScript
- Remove TensorFlow-specific utilities and type definitions

Performance Improvements:
- Model loading: 5x faster (87MB vs 525MB)
- Memory usage: 75% reduction (~200-400MB vs ~1.5GB)
- Distance calculations: Faster pure JS vs GPU overhead for small vectors
- Cold start performance: Significantly improved

Files Changed:
- Updated package.json: New dependencies, simplified scripts
- Rewrote src/utils/embedding.ts: Complete Transformers.js implementation
- Updated src/utils/distance.ts: Optimized JavaScript distance functions
- Simplified src/setup.ts: Removed TensorFlow-specific patching
- Simplified src/utils/textEncoding.ts: Only Node.js TextEncoder/Decoder patches
- Deleted src/utils/robustModelLoader.ts: TensorFlow-specific loader
- Deleted src/types/tensorflowTypes.ts: TensorFlow type definitions
- Added scripts/download-models.cjs: Docker-compatible model downloader
- Added comprehensive documentation: README.md, OFFLINE_MODELS.md, analysis docs

Testing:
- All 19 tests passing
- Removed test mocking in favor of real implementation testing
- Updated test environment for Transformers.js compatibility
- Performance tests validate improved efficiency

This migration resolves production issues with Docker egress limitations and provides a more robust, performant foundation for vector operations.
2025-08-05 19:29:59 -07:00
bbc77f292b refactor: clean up deprecated functions and unused code
Remove unused files and implement proper version handling:
- Remove unused files: tensorflowUtils.ts, patched-platform-node.ts, test reporters
- Fix 5 TODO items with centralized version management in utils/version.ts
- Clean up duplicate metadata definitions in examples/basicUsage.ts
- Fix rollup config to use @rollup/plugin-terser instead of deprecated package
- Add comprehensive migration plan for deprecated methods (12 methods identified)

This cleanup removes 370 lines of dead code while maintaining full API compatibility.
All tests pass and build system works correctly.
2025-08-05 10:16:05 -07:00
cfaf2f8b83 fix(core): resolve TypeScript compilation errors and test failures
- Add missing 'level' property to HNSWNoun objects in storage adapters
- Fix HNSWVerb type compatibility in CacheManager imports
- Clear statistics cache when clearing storage to prevent stale data
- Update test expectations to match actual HNSW index behavior (includes both nouns and verbs)
- Add StatisticsCollector utility for enhanced metrics tracking
- Improve statistics comparison in tests to handle volatile fields
2025-08-04 20:00:38 -07:00
33afd715a0 feat(pagination): implement cursor-based pagination and enhance search caching
- Added SearchCursor and PaginatedSearchResult interfaces for cursor-based pagination support.
- Introduced SearchCache class to cache search results, improving performance.
- Implemented tests for automatic cache configuration and performance improvements.
- Enhanced existing tests to validate pagination and caching behavior.
2025-08-04 14:25:05 -07:00
26e9c26852 feat(distributed): add distributed mode with multi-instance coordination
Implements Phase 1 and Phase 2 of distributed enhancements for horizontal scaling:

Phase 1 - Zero-Config Distributed Mode:
- Add DistributedConfigManager for shared S3 configuration coordination
- Implement explicit role configuration (reader/writer/hybrid) for safety
- Add instance registration with heartbeat and health monitoring
- Create hash-based partitioner for deterministic data distribution

Phase 2 - Intelligent Data Management:
- Add DomainDetector for automatic data categorization (medical, legal, product, etc.)
- Implement domain-aware search filtering for improved relevance
- Create role-based operational modes with specific optimizations
- Add HealthMonitor for comprehensive metrics tracking

Key Features:
- Multi-writer support with consistent hash partitioning
- Reader instances optimize for 80% cache utilization
- Writer instances optimize for batched writes
- Automatic domain detection and tagging
- Real-time health monitoring across all instances
- Cross-platform crypto utilities for browser compatibility

Safety Improvements:
- Require explicit role configuration (no automatic assignment)
- Validate role compatibility on startup
- Track instance health and performance metrics

Testing:
- Add comprehensive test suite for distributed features
- All 25 distributed tests passing
- Fixed domain filtering in search functionality

Documentation:
- Update README with distributed mode highlights
- Add examples showing reader/writer setup
- Document new capabilities and benefits

🤖 Generated with Claude Code
https://claude.ai/code

Co-Authored-By: Claude <noreply@anthropic.com>
2025-08-04 12:18:58 -07:00
9905a5dc35 feat: refactor verb storage to use HNSWVerb for improved performance
- Updated MemoryStorage and BaseStorage to handle HNSWVerb instead of GraphVerb.
- Introduced methods to save and retrieve verb metadata separately.
- Enhanced getVerb and getAllVerbs methods to convert HNSWVerb to GraphVerb with metadata.
- Improved data handling and filtering in various storage methods.
2025-08-03 10:47:47 -07:00
cc6c75befb **feat(docs): add comprehensive Search and Metadata Guide with metadata handling updates**
- **Documentation Additions**:
  - Introduced `SEARCH_AND_METADATA_GUIDE.md` to provide an in-depth guide on Brainy's search and metadata retrieval system:
    - Detailed explanation of search workflows, metadata structures (`GraphNoun`, `GraphVerb`), and core components like `SearchResult`.
    - Usage examples showcasing search queries, filtering by noun/verb types, and advanced features like multi-modal search.
    - Included performance tips on caching, HNSW indexing, lazy loading, and augmentation pipeline.

- **Storage System Updates**:
  - Enhanced memory and file storage adapters to support dedicated noun and verb metadata handling:
    - Added methods `saveN
2025-08-02 16:41:30 -07:00
672be32bea **feat: add scripts to reproduce and test race conditions, write-only mode, and indexing issues**
- **New Scripts**:
  - Created `reproduce_race_condition.cjs` to demonstrate and debug race condition issues in `Brainy`. This includes:
    - Scenarios where verbs arrive before nouns.
    - Testing indexing delays and streaming simulations.
    - Evaluation of the `autoCreateMissingNouns` feature.
  - Added `reproduce_writeonly_issue.js` to reproduce and verify issues with write-only mode:
    - Ensures add operations succeed while search operations give appropriate errors.
    - Handles placeholder nouns and validates their replacement with real data.
  - Developed `test_race_condition_fixes.cjs` to verify the implemented fixes:
    - Covers scenarios for `writeOnlyMode`, fallback storage lookups, and missing noun auto-creation.

- **Documentation Updates**:
  - Added `
2025-08-02 15:09:14 -07:00
38c28ae038 **feat(models): enhance loader reliability and compatibility**
- **Compatibility Enhancements**:
  - Added support to detect and inject missing `"format"` field in `model.json` files for TensorFlow.js compatibility.
  - Modified model loading logic to handle both `tfjs-graph-model` and `tfjs-layers-model` formats.

- **New Features**:
  - Introduced additional fallback paths for locating models to increase reliability in varying environments.
  - Added support for mock implementations of the Universal Sentence Encoder in test environments.

- **Bug Fixes**:
  - Fixed module loading resolution in `FileSystemStorage` with improved initialization and error handling for Node.js environments.
  - Resolved issues with test assertions to improve validation logic in core tests.

**Purpose**: Improve model loading reliability, expand compatibility with TensorFlow.js models, and enhance test environment support.
2025-08-01 18:31:37 -07:00
d2c1dd14e1 **fix(storage): ensure index clearing and statistics flushing for consistency**
- Updated `brainyData.ts`:
  - Made `this.index.clear()` asynchronous to prevent potential timing issues during storage test.
  - Added conditional `this.storage.flushStatisticsToStorage()` call to ensure statistics are properly flushed, avoiding data inconsistencies.

**Purpose**: Enhance storage consistency by ensuring proper index clearing and statistics flushing during tests.
2025-08-01 16:23:25 -07:00
6ee0881d86 **docs(guides): add service identification guide**
- Created `service-identification.md` in `docs/guides`:
  - Detailed guidelines on how services should identify themselves within Brainy.
  - Documented two identification methods: default service initialization and operation-specific service naming.
  - Included service name conventions and common examples (`github`, `reddit`, `default`).
- Described benefits of proper service identification:
  - Enhanced statistics tracking and JSON field discovery by service.
- Provided best practices for consistent and descriptive service naming.
- Explained internal implementation details, such as `getServiceName` usage and statistic tracking.

**Purpose**: Help users properly identify services to enable statistics tracking, field discovery, and improved data management in Brainy.
2025-08-01 10:16:18 -07:00
7e75221ae7 **feat(cache): optimize multi-level cache with dynamic read-only and storage-specific tuning**
- Enhanced `CacheManager` for better handling of large datasets, especially in `S3` or remote storage:
  - Added `REMOTE_API` as a supported storage type.
  - Improved cache sizing and batch tuning:
    - Optimized memory usage based on environment (Browser, Node.js, Worker).
    - Increased cache aggressiveness in read-only mode and for large datasets.
    - Adjusted cache parameters dynamically for S3 or remote storage.
  - Introduced `isReadOnly` and `isRemoteStorage` checks to refine tuning logic.
- Added new `cacheConfig` options:
  - `autoTune`, `autoTuneInterval`, and mode-specific settings for read-only optimizations.
  - Batch sizes, eviction thresholds, and TTLs tailored for operating modes.
- Enhanced documentation:
  - Detailed performance-tuning guides and S3 examples in `README.md`.
  - Included new configuration examples for large datasets in cloud storage.
- Improved extensibility:
  - Unified cache and batch logic under storage type and mode-aware rules.
  - Updated interfaces (`BrainyData`, `StorageFactory`) to include new cache settings.
- Verified enhancements with rigorous testing across multiple configurations.

**Purpose**: Improve caching strategy and query performance in complex cloud and on-premise environments with flexible, dynamic tuning.
2025-08-01 08:50:53 -07:00
f86295eab8 **feat(search): enhance JSON document search with field-level filtering and prioritization**
- Added support for field-specific and prioritized searches in `brainyData`:
  - Introduced `searchField` option to enable targeted field-level searches.
  - Implemented `priorityFields` option for weighted vectorization and query relevance.
- Developed utilities in `jsonProcessing.ts` and `fieldNameTracking.ts`:
  - `extractTextFromJson` for text extraction with customizable depth and field prioritization.
  - `extractFieldFromJson` to target specific fields in JSON documents.
  - `prepareJsonForVectorization` for optimized JSON vectorization.
- Enhanced management of field names and mappings:
  - Integrated `trackFieldNames` to associate fields with their services.
  - Supported cross-service consistency through `standardFieldMappings`.
- Updated documentation:
  - Added detailed guides for JSON search enhancements and HNSW limitations.
  - Extended usage examples in `README.md` and `json-search-test.js`.
- Verified improvements with comprehensive tests:
  - Created unit and integration tests demonstrating search behavior improvements.
  - Addressed previous TypeScript errors related to search parameters.

**Purpose**: Improve search accuracy and usability when working with complex JSON documents by enabling field-specific searches and enhancing contextual relevance.
2025-08-01 08:27:39 -07:00
fa18e73a7f **feat(storage): implement multi-level cache manager with dynamic tuning**
- Added a new `CacheManager` class in `cacheManager.ts` to support three-level caching strategy:
  - **Level 1**: Hot cache in RAM for most accessed nodes.
  - **Level 2**: Warm cache using OPFS, Filesystem, or S3, depending on the environment.
  - **Level 3**: Cold storage for longer-term data storage.
- Integrated features for dynamic tuning:
  - Auto-detection of environment (Browser, Node.js, Worker) and memory availability.
  - Parameter tuning for cache size, eviction thresholds, and TTL based on usage patterns.
- Enhanced support for:
  - LRU-based eviction in hot cache.
  - Batch-based operations with configurable batch sizes.
  - Comprehensive logging and debug outputs for cache operations.
- Ensured robust fallback handling to manage storage in constrained environments.
- Improved extensibility for storage adapters (warm and cold storage detection and initialization).

**Purpose**: Optimize data access and storage across multiple environments with seamless scalability and dynamic parameter adjustments.
2025-07-31 17:57:14 -07:00
1a502def11 **fix(storage): improve restoration and deletion logic in storage adapter**
- Updated `storage-adapter-coverage.test` to handle different adapter behaviors:
  - Memory adapter: size remains 0 after restoration.
  - FileSystem adapter: size matches restored items.
- Enhanced `delete` method in `brainyData.ts`:
  - Added handling for content text passed instead of ID.
  - Improved logging for better traceability during deletions.
- Modified restoration logic to skip index rebuilding during test scenarios:
  - Clears index explicitly in test environments when performing a backup restoration for storage tests.
- Refined logic in `specialized-scenarios.test`:
  - Validated database size changes after adding and deleting items.
  - Enhanced clarity and debugging
2025-07-31 14:03:51 -07:00
c3c4ca31e1 **feat(storage): add pagination and filtering support for nouns and verbs**
- Introduced `PaginationOptions`, `NounFilterOptions`, and `VerbFilterOptions` types for improved query flexibility in data retrieval operations.
- Added `getNouns` and `getVerbs` methods with pagination and filtering capabilities, replacing existing methods for broader use cases and scalability.
- Marked legacy methods (`getAllNouns`, `getAllVerbs`, `getVerbsBySource`, `getVerbsByTarget`, `getVerbsByType`) as deprecated, directing users to use new methods.
- Updated `coreTypes`, `memoryStorage`, and related modules to support new functionality, including cursor and offset-based pagination handling.
- Updated fallback logic for storage adapters, ensuring compatibility with non-paginated operations when required.

**Purpose**: Enhance scalability and query precision by implementing paginated and filtered retrieval of nouns and verbs, aligning query methods with modern requirements.
2025-07-31 13:13:15 -07:00
5d82db12e2 **feat: add write-only mode support and example usage**
- Introduced `writeOnly` mode in `BrainyData` allowing optimized data ingestion by skipping index loading and disabling search operations.
- Enhanced `BrainyDataConfig` to include `writeOnly` support and validate compatibility with `readOnly` mode.
- Implemented error handling for search attempts during `writeOnly` mode.
- Updated the README with detailed usage examples for database modes, including `writeOnly` and `readOnly`.
- Added `examples/write-only-mode.js` to demonstrate practical applications of the `writeOnly` mode.

**Purpose**: Optimize memory usage and startup time for data ingestion scenarios by enabling write-only mode with comprehensive documentation and examples.
2025-07-30 13:32:30 -07:00
e8127c54a5 **feat: implement robust error-handling and operation utilities for storage adapters**
- Added `BrainyError` class to classify and handle errors with types like `TIMEOUT`, `NETWORK`, `STORAGE`, `NOT_FOUND`, and `RETRY_EXHAUSTED`. Includes static helper methods for error creation and retry determination.
- Introduced `operationUtils` with utility functions for timeout, retry logic, and exponential backoff. Implements features like `withTimeout`, `withRetry`, and a combined `withTimeoutAndRetry`.
- Updated `S3CompatibleStorage` to leverage new operation utilities for timeout and retry handling, including `StorageOperationExecutors` for clean operation execution.
- Enhanced `storageFactory` to pass `OperationConfig` for configurable timeout and retry behavior.
- Extended `BrainyData` to include timeout and retry policy configuration at initialization.

**Purpose**: Improve storage reliability by introducing configurable and reusable error-handling and operation utilities, reducing code duplication and enhancing maintainability.
2025-07-30 11:35:09 -07:00
116d6cea79 **docs: add detailed concurrency analysis and implementation documentation**
- Introduced `CONCURRENCY_ANALYSIS.md` to outline identified concurrency issues, including statistics handling, index synchronization, and storage contention.
- Added `CONCURRENCY_IMPLEMENTATION_SUMMARY.md` to summarize concurrency improvements, such as distributed locking and change log mechanisms.
- Created `STORAGE_CONCURRENCY_ANALYSIS.md` to evaluate concurrency risks and applied solutions for different storage adapters (`S3CompatibleStorage`, `FileSystemStorage`, `OPFSStorage`, and `MemoryStorage`).
- Updated codebase with changes related to concurrency, including distributed locking, atomic updates, event-driven synchronization, and change log support.
- Refactored tests to verify behavior of new concurrency mechanisms, including robust error handling and cleanup functions.

**Purpose**: Provides comprehensive documentation and implementation details to ensure robust concurrency handling in multi-instance, high-throughput environments.
2025-07-30 11:01:24 -07:00
524be5010b No commit message can be generated for the provided diff as it appears to be incomplete. Please provide a more descriptive or complete diff to enable me to generate a relevant commit message for you. 2025-07-28 16:25:11 -07:00
94c88e128c **docs: remove outdated statistics-related documentation and add standards**
- **Removed Files**:
  - Deleted outdated statistics documentation files (`statistics.md`, `statistics-flush-solution.md`, `statistics-summary.md`) to clean up the repository and avoid confusion.

- **Added Standards**:
  - Introduced `DOCUMENTATION_STANDARDS.md` to outline naming conventions and troubleshooting practices for more consistent and maintainable project documentation.

- **Tests**:
  - Added a new test file `edge-cases.test.ts` to verify handling of edge cases, ensuring robust behavior against boundary values and invalid inputs.

**Purpose**: Cleans up deprecated documentation while introducing concrete standards for maintaining and updating documentation. Enhances test coverage for unusual or boundary inputs, improving overall system resilience.
2025-07-28 16:00:05 -07:00
86fb1220b6 **feat(core, migration, docs): introduce dimension mismatch resolution tools and migration guide**
- **Core**:
  - Added `check-database.js` to verify database status and validate search functionality.
  - Created `fix-dimension-mismatch.js` to handle re-embedding of existing data to resolve dimension mismatch from 3 to 512.
  - Improved test cases by updating vector operations to support 512 dimensions, replacing previously hardcoded dimensions.

- **Migration**:
  - Developed `DIMENSION_MISMATCH_SUMMARY.md`, detailing the root cause, solution, and preventive strategies for dimension mismatch issues.
  - Added `production-migration-guide.md` for structured production migration with detailed steps on re-embedding strategies, batching, and error handling.

- **Tests**:
  - Enhanced test coverage with 512-dimensional vector validation.
  - Introduced helper functions for consistent vector testing behavior and streamlined search test cases.

- **Documentation**:
  - Updated project documentation to highlight the resolution process for dimension mismatches, emphasizing preventive mechanisms such as auto-migration and version tracking.

**Purpose**: Address critical dimension mismatch issues caused by embedding changes, restore functionality, and provide a roadmap for robust prevention strategies and migration processes.
2025-07-25 13:38:56 -07:00
b81129276c **feat(examples, core, docs): add flushStatistics example, implementation, and documentation**
- **Examples**: Added a new `flush-statistics-example.js` script to demonstrate the usage of the `flushStatistics` method for ensuring updated statistics after data insertion.
- **Core**:
  - Implemented `flushStatistics` in the `BrainyData` class to allow immediate flushing of statistics to storage.
  - Updated `BaseStorageAdapter` with `flushStatisticsToStorage` to support flushing cached statistics.
  - Modified the `shutDown` method to ensure statistics are flushed before database shutdown.
- **Documentation**: Added `statistics-flush-solution.md` to explain the batch update mechanism, the issue with delayed statistics updates, and how to manually flush statistics in storage.

**Purpose**: Provide users with the ability to manually flush statistics for real-time accuracy, particularly useful for systems relying on immediate updates. Improved documentation and examples to guide developers in implementing and using this functionality effectively.
2025-07-25 10:55:37 -07:00
501244398e **feat(core, storage, tests): enhance verb construction with timestamps and metadata**
- **Core**: Improved verb creation logic by adding `createdAt`, `updatedAt`, and `createdBy` attributes. These fields include timestamped metadata (`seconds`, `nanoseconds`) and source augmentation/service information for better tracking.
- **Storage**: Refactored `BaseStorage` methods to utilize internal variants (e.g., `saveVerb_internal`, `getNoun_internal`). Added support for new verb attributes while maintaining backward compatibility with existing data structures.
- **Tests**:
  - Updated `s3-storage.test.ts` and `opfs-storage.test.ts` to validate changes in verb attributes such as timestamps and augmentation metadata.
  - Added assertions for `createdAt`, `updatedAt`, and `createdBy` fields in test cases.
- **Cleanup**: Replaced ambiguous type aliases like `Edge` and `HNSWNode` with clearer equivalents (`Verb` and `HNSWNoun_internal`) for consistency across storage adapters.

**Purpose**: Enhance metadata tracking and standardize attribute handling across storage and core modules to ensure accurate and consistent data throughout the system.
2025-07-25 09:44:10 -07:00
ae3560aad3 **refactor(core): remove redundant whitespace and format code**
- **Code Cleanup**: Removed unnecessary trailing whitespaces across `src/brainyData.ts`. Adjusted formatting for inline object spreads to maintain a consistent coding style.
- **Purpose**: Enhance code readability and ensure adherence to formatting standards without altering functionality.
2025-07-24 17:01:04 -07:00
bc480770b5 **feat(core, statistics, storage): enhance service-level statistics tracking and result filtering**
- **Core**: Introduced a `getCurrentAugmentation` method for detecting active augmentation names. Updated metadata handling to include `createdBy`, `createdAt`, and `updatedAt` attributes for improved tracking.
- **Storage**: Added support for service-based statistics tracking with new methods such as `incrementStatistic`, `decrementStatistic`, and `updateHnswIndexSize`. Implemented persistence for statistics in storage adapters.
- **Statistics**: Enhanced `getStatistics` functionality to provide service-specific breakdowns and support filtering by services. Improved noun, verb, and metadata tracking mechanisms.
- **Search**: Added `service` option to filter results during searches for nouns, verbs, and metadata, ensuring accurate service-based query results.
- **Refactor**: Simplified search logic by integrating HNSW index filtering for better performance when retrieving service-specific results.
- **Tests**: Added comprehensive test coverage for service-level statistics and filtering by service.

**Purpose**: Improve service-level data tracking and analytics while enhancing functionality for filtering and maintaining metadata accuracy to support detailed insights for diverse use cases.
2025-07-24 12:07:47 -07:00
2322b53a0c feat(core, tests): add standalone getStatistics function and improve storage configuration
- **Core**: Introduced a new `getStatistics` utility function in `statistics.ts` for fetching database statistics at the root level of the library. Enhanced `BrainyData` methods to ensure metadata includes `id` field and refined statistics calculations, excluding verbs from the noun count.
- **Tests**: Added comprehensive test coverage in `statistics.test.ts` for the new utility function, validating proper error handling, statistics accuracy, and consistent results between instance methods and standalone function.
- **Storage Config**: Enabled dynamic support for AWS S3, Cloudflare R2, and Google Cloud Storage in web service configuration, utilizing environment variables for adapter setup. Addressed a race condition in `FileSystemStorage` initialization by deferring path module imports.

**Purpose**: Enhance database analytics by introducing a reusable `getStatistics` function, improve flexibility in storage configuration, and ensure robust testing for reliability and accuracy.
2025-07-23 16:26:59 -07:00
b8f10ba39a Merge remote-tracking branch 'origin/main' 2025-07-23 12:39:19 -07:00
b348fcc438 **feat(core): add getStatistics method to BrainyData for detailed DB insights**
- **New Method**:
  - Introduced a new `getStatistics` method in `brainyData.ts` to retrieve key database metrics:
    - Counts for nouns, verbs, metadata entries, and HNSW index size.

- **Error Handling**:
  - Added try-catch blocks to ensure robust error management when fetching metadata or logging failures.

- **Purpose**:
  - Enhances observability of the database state, providing valuable insights for diagnostics and monitoring.
2025-07-23 12:39:17 -07:00
97db2daa50 feat(core): enhance addVerb functionality with auto-creation of missing nouns
- Added `autoCreateMissingNouns` and `missingNounMetadata` options to the `addVerb` method in `brainyData.ts`, enabling automatic creation of missing source or target nouns.
- Improved error handling and logging for auto-creation failures, ensuring better feedback during runtime.
- Reformatted existing code for storage options validation to improve readability and maintain consistency.

**Purpose**: Simplify the addition of relationships by automating the process for non-existing nouns and enhance developer experience with better error handling and logging.
2025-07-22 16:01:48 -07:00