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8 commits

Author SHA1 Message Date
c0d326b36d feat: verb subtype + updateRelation + requireSubtype enforcement
Brings verbs to first-class parity with nouns. The 7.29.0 subtype primitive
shipped for entities only; this release ships the symmetric verb mirror plus
the enforcement layer for ensuring every entity AND every relationship has
both type AND subtype.

Layer V1 — verb subtype mirror
- HNSWVerbWithMetadata.subtype + STANDARD_VERB_FIELDS set + resolveVerbField()
- Relation<T>.subtype, RelateParams<T>.subtype, UpdateRelationParams<T> extended,
  GetRelationsParams.subtype, GraphConstraints.subtype (for find connected)
- relate() persists subtype on verbMetadata + GraphVerb + transaction ops
- getRelations({ type, subtype }) fast-path filter with set membership
- find({ connected: { via, subtype, depth } }) traversal filter (depth-1 on
  the JS path; explicit error on depth > 1 pointing at Cortex native)
- verbsToRelations + storage destructure sites surface subtype to top-level
- All three graph-index fast-path queries (getVerbsBySource/ByTarget) enrich
  with subtype from metadata

Layer V2 — updateRelation() closes a pre-7.30 gap
- New first-class verb update method (parallel to update() for nouns)
- Changes subtype/type/weight/confidence/data/metadata in place
- Re-indexes in graph adjacency when verb type changes; id preserved
- validateUpdateRelationParams enforces id + at-least-one-field-to-update

Layer V3 — verb subtype storage rollup
- verbSubtypeCountsByType: Map<number, Map<string, number>> on BaseStorage
- verbSubtypeByIdCache for self-heal during update/delete
- incrementVerbSubtypeCount + decrementVerbSubtypeCount maintain state
- loadVerbSubtypeStatistics + saveVerbSubtypeStatistics persist to
  _system/verb-subtype-statistics.json (mirrors noun-side shape)
- rebuildVerbSubtypeCounts for poison recovery / explicit repair
- getVerbSubtypeCountsByType accessor for the public counts API
- Wired into init() / flushCounts() / saveVerbMetadata / deleteVerbMetadata

Layer V4 — verb counts API + relationshipSubtypesOf
- brain.counts.byRelationshipSubtype(verb, subtype?) — O(1) breakdown or point
- brain.counts.topRelationshipSubtypes(verb, n) — top N by count
- brain.relationshipSubtypesOf(verb) — sorted distinct subtypes

Layer V5 — migrateField extended to verbs
- New entityKind?: 'noun' | 'verb' | 'both' option (default 'noun')
- Mirror verb iteration via storage.getVerbs() with same path semantics
- verbToRelationLike + buildRelationMigrationUpdate helpers project the
  storage verb shape onto the Entity<T>-shaped surface readPath understands
- Routes through new updateRelation() for the verb-side rewrite

Enforcement (opt-in in 7.30, default in 8.0)
- brain.requireSubtype(type, options) — unified API for NounType OR VerbType.
  Registers per-type rules with optional values whitelist; composes with the
  brain-wide flag.
- new Brainy({ requireSubtype: true }) — brain-wide strict mode. Every public
  write path validates the pairing guarantee.
- { except: [NounType.Thing, ...] } form for catch-all type exemptions
- Atomic-fail semantics on addMany / relateMany — pre-validate every item
  before any storage write, throw on first failure with item index
- Per-type rules + brain-wide flag both throw with descriptive messages
- VFS infrastructure bypass via metadata.isVFSEntity / isVFS markers so
  brain's own VFS writes don't get rejected when strict mode is on

VFS labeling — concrete subtypes for infrastructure entities
- VFS root: NounType.Collection + subtype: 'vfs-root' (was bare Collection)
- VFS directories: subtype: 'vfs-directory'
- VFS files: subtype: 'vfs-file' (NounType still mime-based)
- VFS containment edges: VerbType.Contains + subtype: 'vfs-contains'
- Lets consumers cleanly enumerate VFS state via find({ subtype: 'vfs-file' })
  and distinguish Brainy's VFS Collections from user-created Collections

Docs
- docs/guides/subtypes-and-facets.md extended with Layer V (Verbs) section +
  Enforcement section. New full reference at the bottom split into Layer 1
  (nouns), Layer V (verbs), Layer 2 (facets), Layer 3 (migration), Enforcement.
- docs/api/README.md adds updateRelation(), getRelations({ subtype }), the
  three verb-side counts methods, requireSubtype(), and the brain-wide
  constructor option. relate() params include subtype.
- docs/DATA_MODEL.md adds a Subtype-for-VerbType section + STANDARD_VERB_FIELDS
- docs/architecture/finite-type-system.md extends Principle 1a to verbs
- docs/QUERY_OPERATORS.md adds a verb-subtype filter section covering
  getRelations and find({connected, subtype}) traversal
- README.md "Subtypes" section now shows both noun + verb in one example +
  the enforcement APIs
- RELEASES.md v7.30.0 entry with the full noun/verb capability parity matrix

Tests
- tests/integration/verb-subtype-and-enforcement.test.ts — 30 new tests
  covering V1 round-trips, V1 set membership, updateRelation in place,
  updateRelation preservation, V2 counts breakdown + point + topN + distinct,
  V2 decrements on unrelate, V2 re-routes on updateRelation, V3 depth-1
  traversal filter, V3 depth>1 explicit error, V4 verb migration, V4 both
  entity kinds, V4 readBoth preservation, V5 per-type required rejection,
  V5 vocabulary rejection, V5 on-vocab acceptance, V5 verb-side enforcement,
  V5 addMany atomic-fail, V5 relateMany atomic-fail, V5 update enforcement,
  V5 updateRelation enforcement, V5 brain-wide strict mode, V5 except clause.

Verification
- Unit suite: 1468/1468 passing
- Noun subtype integration (7.29 carryover): 26/26 passing
- Verb subtype + enforcement integration: 30/30 passing
- Type-check: clean
- Build: clean
- Public closed-source reference audit: clean

Internal 8.0 spec
- .strategy/BRAINY-8.0-SUBTYPE-CONTRACT.md (gitignored, not in npm artifact)
  documents the contract upgrade Cortex 3.0 implements against: required-by-
  default subtype, SubtypeRegistry typing hook, native simplification,
  multi-hop traversal native fast path, brain.fillSubtypes() migration helper.
  Coordinated via PLATFORM-HANDOFF rows CTX-SUBTYPE-PARITY-V2 (7.30 parallel
  work) and CTX-SUBTYPE-8.0-CONTRACT (8.0 spec).
2026-06-05 11:15:52 -07:00
2cdf70ee0f feat: subtype top-level field + trackField + migrateField
Promotes `subtype?: string` to a top-level standard field on every entity,
alongside `type` / `confidence` / `weight`. Flat string, no hierarchy — the
consumer-chosen vocabulary for sub-classifying entities within a NounType
(Person → employee/customer, Document → invoice/contract, etc.).

Layer 1 — subtype field + rollup
- HNSWNounWithMetadata.subtype + STANDARD_ENTITY_FIELDS entry
- Entity / Result / AddParams / UpdateParams / FindParams threading
- add()/update() persist subtype on storageMetadata + entityForIndexing
- get()/find() route through the standard-field fast path
- subtypeCountsByType (Map<NounTypeIdx, Map<subtype, count>>) on
  BaseStorage, mirrored after nounCountsByType with the same self-heal
  rebuild and persisted to _system/subtype-statistics.json
- brain.counts.bySubtype(type, subtype?) — O(1) point + breakdown
- brain.counts.topSubtypes(type, n) — top-N by count
- brain.subtypesOf(type) — distinct subtypes seen
- find({ type, subtype }) and find({ subtype: ['a','b'] }) on the fast path

Layer 2 — trackField for other facets
- brain.trackField(name, { perType?, values? }) registers a field for
  cardinality + per-NounType breakdown stats. Backed by the aggregation
  engine (auto-defines __fieldCounts__<name>), backfill-on-define applies.
- brain.counts.byField(name, { type? }) returns value frequencies
- Optional vocabulary whitelist rejects off-vocabulary writes at add/update

Layer 3 — generic migrateField
- brain.migrateField({ from, to, readBoth?, batchSize?, onProgress? })
  streams every entity, copies the value from one path to another, and
  (unless readBoth) clears the source. Supports top-level standard fields,
  metadata.X, and data.X paths. Idempotent — safe to re-run.

Docs
- New guide: docs/guides/subtypes-and-facets.md (Layer 1 + 2 + 3)
- README, DATA_MODEL, QUERY_OPERATORS, api/README, finite-type-system,
  quick-start all treat subtype as a core primitive with anonymous example
  vocabularies (employee/customer/invoice/milestone).

Tests
- 26 new integration tests covering write/read/update/delete round-trips,
  counts rollup decrement + re-route on mutation, trackField + byField
  with and without perType, vocabulary whitelist enforcement, and
  migrateField for metadata.X → subtype and data.X → subtype paths
  including readBoth deprecation-window semantics.

Unit suite: 1468/1468 passing. Type-check + build clean.
2026-06-04 17:25:28 -07:00
c2e21b7b3c feat: array-unnest groupBy for aggregates + batch-embed entity extraction
- groupBy now supports { field, unnest: true }: an entity contributes once per
  distinct element of an array field (tag frequency / faceted counts). Duplicate
  elements on one entity count once; an empty/missing array joins no group. The
  incremental add/update/delete paths fan out across the unnested groups.
- extractEntities/extractConcepts batch-embed the unique candidate spans in one
  embedBatch call instead of one embed() per candidate (N sequential model calls);
  falls back to per-candidate embedding if the batch fails. No behavior change.
2026-05-26 14:20:40 -07:00
1a98e4276a feat: queryAggregate() + HAVING, plus aggregate backfill, traversal depth/via, extraction typing (BR-ADV-FEATURES-BUN)
New report APIs:
- brain.queryAggregate(name, params) returns the clean AggregateResult[] shape
  ({ groupKey, metrics, count }) directly, instead of the search-Result wrapper that
  find({ aggregate }) returns.
- HAVING: find({ aggregate, having }) and queryAggregate filter groups by computed
  metric values (e.g. revenue > 1000), complementing where (which filters group keys).
  Evaluated per group: O(groups), independent of entity count.

Fixes (all reproducible on Node; surfaced under Cortex+Bun by Memory):
- Aggregate backfill-on-define: defining an aggregate over a store that already holds
  matching entities returned []. It now backfills from existing entities on first query
  (storage-agnostic via getNouns), so it works under durable backends that reopen
  pre-populated. groupBy:['noun'] resolves to the entity type; find({ aggregate }) rows
  expose groupKey/metrics/count at the top level.
- Multi-hop find({ connected: { depth, via } }) honors depth and via at every hop
  (was 1-hop only, with verb filtering applied to hop 1 only); BFS bounded by limit.
- extractEntities no longer bleeds a neighbour's type indicator across candidates; each
  candidate is typed by its own span. Also fixes the "Dr." title pattern.

Adds real-embedding regression tests; full unit suite green.
2026-05-26 13:55:43 -07:00
0a9d1d9a17 fix: extraction, multi-hop traversal, and aggregate result shape (BR-ADV-FEATURES-BUN)
Three advanced-API correctness fixes, all reproducible on Node (not Bun-specific):

- Entity/concept extraction returned []. SmartExtractor combined agreeing signals
  with a weighted sum compared against an absolute 0.60 gate, so a confident
  low-weight signal lost selection to a mediocre high-weight one that then failed
  the gate, dropping the whole result. Select and gate on a normalized weighted
  average instead. The public `confidence` option now controls the threshold (was
  a dead hardcoded 0.60), and the embedding-signal timeout is raised 100ms -> 2000ms
  so the neural signal is not silently dropped on slower runtimes.

- Multi-hop find({ connected }) returned only the 1-hop neighbour. executeGraphSearch
  ignored depth/via; it now delegates to the depth-aware neighbors() BFS.

- find({ aggregate }) hid groupKey/metrics/count under .metadata, so callers
  expecting AggregateResult saw empty rows. Expose those fields at the top level.

Adds real-embedding regression tests in tests/integration/advanced-apis-regression.test.ts.
2026-05-26 11:32:46 -07:00
70263113ad fix: find()/stats() correctness + Cortex compat (BR-FIND-WHERE-ZERO, BR-DEFENSIVE-INTERFACE)
Two production correctness defects fixed together so consumers can land
one upgrade.

BR-FIND-WHERE-ZERO — find() returned [] and stats() reported 0 entities
for any workspace whose data was written after the 7.20.0 column-store
refactor. Root cause: getStats() and the getIds() fallback still read
from the deleted sparse-index path. Separately, BaseStorage.getNounType()
was hardcoded to return 'thing', poisoning type-statistics.json with
every noun attributed to that bucket.

  - MetadataIndex.getStats() reads from ColumnStore + idMapper.
  - MetadataIndex.getIdsFromChunks() throws BrainyError(FIELD_NOT_INDEXED)
    when neither store has the field. getIdsForFilter() catches per
    clause, logs once, returns [].
  - BaseStorage.nounTypeByIdCache populated in saveNounMetadata_internal
    and consumed in saveNoun_internal. flushCounts() now persists the
    Uint32Array counters too, so readers see fresh per-type counts.
  - Self-heal at init: loadTypeStatistics() auto-rebuilds when the
    poisoned signature is detected. rebuildTypeCounts() is now public for
    use from `brainy inspect repair`.
  - Dead state removed: dirtyChunks, dirtySparseIndices,
    flushDirtyMetadata().

BR-DEFENSIVE-INTERFACE — 7.21.0 called supportsMultiProcessLocking()
unconditionally, crashing on older Cortex storage adapters that predate
the method. New hasStorageMethod(name) helper gates every new-method
call site. Older adapter triggers a one-line warning at init pointing
at the recommended plugin version.

Tests:
  - new tests/integration/find-where-zero.test.ts (7 cases)
  - new tests/integration/cortex-compat.test.ts (5 cases)
  - multi-process-safety.test.ts updated to enforce correct counts
  - 1329/1329 unit + 24/24 new integration tests passing
2026-05-15 12:31:28 -07:00
4fcdc0fef3 feat: multi-process safety + read-only inspector mode
Filesystem storage now enforces single-writer, many-reader semantics.
A second writer on the same data directory throws at init time with the
holder's PID, hostname, and heartbeat — replacing the previous silent
stale-reads failure mode.

- New: `Brainy.openReadOnly()` — coexists with a live writer, every
  mutation throws clearly.
- New: writer lock at `<rootDir>/locks/_writer.lock` with 10s heartbeat
  and stale-detection (PID liveness + heartbeat freshness).
- New: cross-process flush-request RPC (filesystem-based, no signals)
  so inspectors can force fresh state on demand.
- New: `brain.stats()`, `brain.explain(findParams)`, `brain.health()`
  for operator-facing introspection.
- New: `brainy inspect` CLI with 13 subcommands (stats, find, get,
  relations, explain, health, sample, fields, dump, watch, backup,
  repair, diff), all read-only by default.
- Same-PID re-opens allowed with a warning (preserves test "simulate
  restart" patterns).
- Storage instances passed directly via `storage: new MemoryStorage()`
  are now honoured instead of silently falling through to the
  filesystem auto-detect path.

Brainy + Cortex compose under this model — the lock covers both because
they share `rootDir`, Cortex segments are immutable mmap files, and
MANIFEST updates use atomic-rename.
2026-05-15 11:25:05 -07:00
a862b78585 docs: add RELEASES.md + cross-project coordination section to CLAUDE.md 2026-02-28 10:07:34 -08:00