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199 commits

Author SHA1 Message Date
d321cf5f33 fix(8.0): gate native graph analytics on the provider readiness flag
The optional native graph-acceleration provider exposes `isInitialized`,
which is false during its cold-start / rebuild window (engine + cursor not
yet loaded). The accessor cached the resolved provider INSTANCE but never
re-checked readiness, so `brain.graph.*` could dispatch to a not-ready
provider and throw instead of answering.

Resolve and cache the instance once, but check `isInitialized` LIVE on every
call: route to the pure-TS analytics path while the provider is not ready,
and re-engage the native path automatically the moment it flips true. This
gates every native route at once — subgraph, export, rank, communities,
path, and the query→expand fusion. Adds a test asserting the provider is
never called (and the TS fallback returns real answers) while not ready.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-24 15:18:50 -07:00
c9e2169415 feat(8.0): #35 part-3 — supply at-gen candidate vectors for the native exact-rerank
Completes brainy's #35 side. When the at-gen vector gate serves a filtered
semantic read, Brainy now ships the historically-correct candidate vectors so the
native provider reranks against them with zero per-vector FFI crossing — the
provider need not duplicate the per-generation retention Brainy already does.

- New `AtGenerationVectors { ids: BigInt64Array; vectors: Float32Array; dim }` on
  the VectorIndexProvider.search options bag (row-major: vectors[i*dim..] == ids[i];
  invariant vectors.length === ids.length*dim; ids = the candidate set; dim must
  match the index dim). The built-in JS index ignores it.
- buildAtGenerationVectors resolves each universe id's vector AS OF the generation
  (the record before-image, or live getNoun when untouched since the pin — not
  readNounRaw, whose canonical path is empty under lazy-vector eviction), interns
  the id via the shared mapper, and packs row-major. Absent/vectorless/wrong-dim
  ids are dropped (not vector-rankable). Bounded by the filtered universe.

Shape + the four clarifications (row-major, ids-are-the-candidate-set, dim-asserted,
filtered-path-only) confirmed with cor in the handoff #35 thread. Inert until cor's
native at-gen rerank advertises isGenerationVisible (honesty guard).

Tested: the mock versioned provider now asserts it receives atGenerationVectors with
the row-major invariant, correct dim, and ids resolving back to the at-gen universe.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-23 16:50:41 -07:00
1c363e8c4b feat(8.0): asOf at-gen vector defer — provider-served historical semantic search (#35)
A filtered semantic read at a historical generation (db.asOf(g).find({ query, where }))
no longer unconditionally rebuilds an ephemeral JS-HNSW over every at-g vector
(O(n@G), the OOM ceiling the 2026-06-24 scaling audit flagged). When the vector
index is a VersionedIndexProvider that advertises isGenerationVisible(g), Brainy:
  1. resolves the at-g metadata∩graph universe from the record-overlay path (no
     materialization — it's the metadata-only historical find),
  2. routes the vector leg to the provider with { allowedIds, generation }, and
  3. composes the at-g entities ranked by the provider's at-g vector distance.
Without a versioned provider (the JS index, or a native one that refuses the
generation) it falls through to the existing materialization — unchanged.

- Seam (A): VectorIndexProvider.search gains an optional `generation?: bigint`
  ("omitted = now"), the vector mirror of the graph provider's trailing-gen + the
  #46 allowedIds field. JsHnswVectorIndex accepts and ignores it (no per-gen
  segments → refuse/fall-back posture; Brainy never routes a historical read there).
- Gate: Db.find tries the native at-gen vector path before materialize(); host
  exposes canServeVectorAtGeneration + vectorSearchAtGeneration.
- generation is Brainy's u64 commit counter — the same value handed to the graph
  index on writes (graphWriteGeneration), so it maps 1:1 to the native side.

Decided lockstep with the cor team (handoff #35 thread: (A) + vector-only). The
gen-g candidate-vector supply for cor's exact-rerank (part-3) is a separate,
non-blocking seam still being confirmed; the honesty guard keeps this path inactive
(falls through to materialize) until cor's native at-gen rerank is live.

Tested: provider routing + at-gen universe correctness (excludes future-born,
applies the filter) + page window via a mock versioned provider; seam-ignore on the
JS index; 38 db-mvcc/db-temporal historical-read tests green (materialize fallback).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-23 15:52:09 -07:00
450084b6ce perf(8.0): bound find({ where, orderBy }) sort to the page (CTX-BR-FIND-ORDERBY)
A filtered + ordered find() materialized the FULL sorted match set before slicing
the page — passing k = filteredIds.length to the column store's filteredSortTopK.
A broad filter + orderBy returning 20 rows at billion scale produced hundreds of
millions of sorted ids to discard all but the page (O(matches) heap).

Thread the page bound (offset + limit + the hidden-tier over-fetch) into
getSortedIdsForFilter → filteredSortTopK / sortTopK / the sparse-path slice, so
the sort produces only the page. Ordering and pagination are unchanged.

From cor's 2026-06-24 co-release scaling audit (item 1).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-23 15:01:49 -07:00
82dde92077 feat(8.0): brain.graph.subgraph(query) query→expand fusion (#61)
The subgraph seed selector now accepts not just entity id(s) but a find() result
or a FindParams query — brain.graph.subgraph({ where: { team: 'platform' } },
{ depth: 1 }) runs the query and expands the neighborhood of every match in one
call. Existing id-seeded calls are unchanged.

The win is the native query→expand path: for a metadata-only query, the matched
universe is forwarded to traverse() as an OpaqueIdSet (a roaring Buffer) with NO
id materialization in TypeScript — the find() result never leaves the engine's
representation (the O(1)-crossing the cor 3.0 contract is built around). The
pure-JS path (or any query carrying vector/text/proximity criteria) materializes
the matched ids via find() and seeds the traversal from them, capped at a bounded
default when the caller pins no limit.

- New public `SubgraphSelector<T>` union (id | id[] | Result[] | FindParams).
- find()'s metadata filter-builder extracted to a shared `buildMetadataFilter`
  (reused by the opaque universe producer); behavior unchanged.
- graphSubgraphNative generalized to accept `bigint[] | OpaqueIdSet` seeds.

Tested: JS query→expand + Result[] selector + empty-match in graph-subgraph, and
the native opaque pass-through (Buffer reaches traverse unmaterialized) vs the
find()-materialized bigint[] seeds via the mock provider in graph-native-routing.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-23 13:30:30 -07:00
dd325f2f94 feat(8.0): vector allowedIds predicate-pushdown into find() (#46)
Filtered semantic search now keeps its recall. A find({ query, where }) that
pairs vector search with a metadata filter restricts the HNSW beam walk to the
matching candidates INSIDE the traversal (walk-all, collect-allowed) rather than
filtering the top-k afterward — so a query whose nearest vectors are all filtered
out still returns the best matches that DO pass the filter, instead of empty.

- JS HNSW search() honors the 8.0 `allowedIds: OpaqueIdSet | ReadonlySet<string>`
  contract param (ANDs with candidateIds; ignores the opaque Buffer form it can't
  decode — only a native provider consumes that).
- MetadataIndexProvider gains an OPTIONAL `getIdSetForFilter(filter): OpaqueIdSet`
  producer — the native (cor) metadata index returns its roaring filter result as
  a serialized buffer; the JS index does not implement it.
- find() forwards the matched universe to the vector walk: the opaque buffer
  (zero id materialization) when the native producer is present, alongside the
  materialized visibility-precise candidateIds for the JS index. Visibility stays
  correct via the existing post-search hard filter.

Tested: JS recall/restriction/AND/opaque-ignore on the index directly, plus
find() forwarding the opaque universe through to the beam walk via a stubbed
native producer.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-23 13:18:34 -07:00
632d90aac5 feat(8.0): graph analytics — brain.graph.rank / communities / path
Adds three intent-level graph reads to the `brain.graph` namespace, each
native-dispatched to the optional `@soulcraft/cor` 3.0 graph engine when present
and served from pure-TS kernels otherwise (identical public shapes, default
visibility filter respected on both paths):

- `rank(opts?)` → `{ id, score }[]` descending — importance / centrality.
  TS fallback: PageRank power-iteration with dangling-mass redistribution.
- `communities(opts?)` → `{ groups, count }` — connected grouping. TS fallback:
  union-find weakly-connected components, or iterative Tarjan SCC when
  `{ directed: true }`.
- `path(from, to, opts?)` → `{ nodes, relationships, cost } | null` — best route.
  TS fallback: BFS for fewest hops, Dijkstra (min-heap) for least summed edge
  weight (`by: 'weight'`); on-demand frontier expansion so short paths terminate
  early. `direction` / `type` / `maxDepth` filters apply.

These are intent contracts, not algorithm contracts — the question is the
promise, the algorithm is the engine's choice.

Pure kernels live in src/graph/analyticsFallback.ts (PageRank, connected
components, Tarjan SCC, MinHeap) — unit-tested in isolation. The full surface is
tested end-to-end through the TS fallback, and the native dispatch + int↔uuid
hydration paths are covered by a mock provider in graph-native-routing.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-23 12:32:03 -07:00
4d0b64f455 fix(8.0): restore() reloads a native entity-id mapper before graphIndex.rebuild()
A logical snapshot restore could silently lose graph edges on a brain backed by
a native provider: the graph adjacency keys on the shared id-mapper's interned
ints (sourceInt/targetInt), which are derived + never persisted, and restore()
never reloaded the mapper — so a native graph rebuild resolved verb endpoints
against a stale/empty mapper and dropped edges.

restore() now calls entityIdMapper.rebuild() — a new OPTIONAL method on the
EntityIdMapperProvider contract — BEFORE rebuilding the indexes, so a native
mapper reloads its int<->uuid from the restored binary KV first and the graph
resolves endpoints correctly. The JS mapper deliberately has NO rebuild() and
needs none: MetadataIndex.rebuild() re-derives it from the restored entities via
append-only getOrAssign, consistently with the bitmaps it builds — forcing a
reload there would blank a still-referenced mapping and break find() after a
same-instance restore.

Contract: graphIndex.rebuild() resolves sourceId/targetId -> ints through the
shared mapper itself (brainy does not re-feed resolved endpoints); brainy's only
job is to ensure the mapper is reloaded first.

Test: relationships survive a snapshot round-trip (db-mvcc.test.ts). 84
generation/temporal/visibility tests green; tsc clean.
2026-06-23 12:02:17 -07:00
5c3bb2c864 feat(8.0): Model-B per-write generation-stamping + adaptive retention knob
Every write — transact() AND single-op add/update/remove/relate — is now its
own immutable generation (Model-B), so a now() pin always freezes and
asOf/since/diff/history/transactionLog reflect single-ops exactly like
transacts. Closes the Model-A hole where pins did not freeze against single-op
writes.

Generation-stamping:
- GenerationStore.commitSingleOp: a one-operation commitTransaction with
  deferred durability. Wired into add/update/remove/relate/updateRelation/
  unrelate + removeMany (the *Many and VFS paths delegate to these).
- Async group-commit (flushPendingSingleOps): the live write is acknowledged
  immediately; its before-image is buffered in an in-memory pending tier that
  resolveAt/chains/changedBetween/tx-log read like on-disk generations, so the
  synchronous now() freezes with no forced flush. One fsync per window
  (triggers: size / 50ms timer / flush / close / transact / compactHistory).
- Crash recovery is drop-without-restore for group-commit generations (marked
  groupCommit:true): a crash mid-flush discards the partial generation and
  never restores its before-images, which would otherwise revert the
  already-acknowledged live write.
- Init-time infrastructure (the VFS root) is the un-versioned generation-0
  baseline: a fresh brain reports generation()===0 and an empty
  transactionLog(); the first user write is generation 1.
- Historical find()/related() overlay bound is the full reserved watermark
  (generation()), so un-flushed single-op writes are overlaid too.

Retention knob:
- config `history` -> `retention`: 'all' | 'adaptive' |
  { maxGenerations?, maxAge?, maxBytes?, budgetBytes?, autoCompact? }; unset ->
  adaptive (disk/RAM pressure, zero-config). CompactHistoryOptions floors ->
  caps (retainGenerations->maxGenerations, retainMs->maxAge, +maxBytes):
  reclaim oldest-unpinned while ANY cap is exceeded; pins always exempt.
- brain.setRetentionBudget(bytes) drives the adaptive byte budget at runtime
  (a coordinator's fair-share input). Per-generation bytes recorded in each
  delta enable historyBytes() introspection without a storage size API.

Tests: per-write generation resolution, pin freeze vs add/update/remove,
drop-without-restore corruption-trap (fault injector), clean-reopen replay,
maxBytes/maxAge/no-cap reclamation, retention-then-reopen. 107 db/generation/
temporal tests green, tsc clean. Docs (ADR-001, consistency-model, snapshots
guide, api reference, RELEASES) updated to per-write granularity + retention.
2026-06-22 15:19:58 -07:00
29410bc568 test(8.0): cover the native graph seam + make provider resolution factory-tolerant
The brain.graph.subgraph/export NATIVE routing (graphSubgraphNative /
graphExportNative / hydrateNativeSubgraph + provider resolution) had ZERO brainy
CI coverage — in production it's exercised only cross-layer against cor's engine,
so a columnar return-shape or hydration-alignment drift would pass brainy CI
silently. This registers a faithful MOCK GraphAccelerationProvider returning a
columnar Subgraph built from the brain's REAL ints, locking the seam:
- subgraph() routes native (traverse called) and hydrates node int->id, the
  nodeDepth column aligned to the node column, node type via batchGet, and edge
  verb-int->Relation via verbIntsToIds + getVerbsBatchCached.
- node<->depth alignment is preserved when a node int does NOT resolve
  (deleted/unknown) — the unresolvable int is dropped, not collapsed (which would
  shift every later depth). This is the exact hydration risk the release audit flagged.
- export() routes to the graph cursor, hydrates chunks, and ALWAYS closes the handle.

Also fixes a latent contract bug found writing the test: graphAccelerationProvider()
only accepted a ready instance, so a provider registered as a (storage)=>provider
FACTORY (the convention graphIndex/metadataIndex/vector use) would fail the duck-test
and the native path would silently never engage. Now resolves instance OR factory,
cached. Covered by the factory-registration test.
2026-06-22 09:34:09 -07:00
c2a84c9d1f feat(8.0): brain.graph.export() + noun-walk cursor + noun visibility hydration
brain.graph.export() streams the WHOLE graph in one O(N+E) pass — node chunks
then edge chunks, async-iterable — the right primitive for visualizing all data
(vs. paging per node). Native snapshot-consistent graphCursor when present, else
a TS cursor walk over nouns + verbs. Building it surfaced two latent noun bugs,
both fixed here (each a correctness win beyond export):

- getNounsWithPagination IGNORED its cursor ('offset-based, cursor planned') —
  the noun mirror of the verb bug fixed in the cursor-pagination commit. Latent
  because the only multi-page consumer (aggregate backfill) uses one big page; a
  small chunkSize needed page 2 and, trusting the returned-but-ignored nextCursor,
  re-fetched page 0 forever (infinite loop). Ported the proven verb cursor:
  opaque cn1:<shard>:<id> token, stable within-shard id order, resume-after,
  O(N) at any chunk size. (Generalized verbIdFromVectorPath → idFromVectorPath.)
- hydrateNounWithMetadata DROPPED 'visibility' (noun mirror of the Fix #1 verb
  hydration bug) — so getNouns-fed visibility filters saw nothing and leaked
  system (VFS root) / internal nodes. Now hydrated.

- New: GraphApi.export + GraphExportOptions (chunkSize, includeInternal/System,
  includeNodes/Edges). hydrateNativeSubgraph extracted + shared by subgraph+export.

Test: graph-export.test.ts — full-graph completeness incl. isolated nodes,
default-hides-internal, node/edge include toggles, chunkSize chunking (the
case that exposed the cursor hang). Full gate green.
2026-06-21 10:22:12 -07:00
8c2b57a488 feat(8.0): brain.graph.subgraph() + native-provider routing
Introduces the brain.graph namespace and its first op, subgraph() — bounded
multi-hop neighborhood extraction returning a hydrated GraphView (nodes with hop
depth + type/subtype, edges as Relations, a truncated flag). The one-call answer
to 'show me everything around this node, N hops out' the graph-viz path needs.

- brain.graph.subgraph(seeds, { depth, direction, type, subtype, includeInternal,
  includeSystem, maxNodes, maxEdges, hydrateNodes }). seeds: id or id[].
- Feature-detect routing: when a GraphAccelerationProvider is registered
  (isGraphAccelerationProvider on the 'graphAcceleration' provider) it routes to
  native traverse() and hydrates the columnar Subgraph (node ints↔ids paired with
  depth position-preserving, edge verb ints → Relations); otherwise a pure-TS BFS
  fallback expands each frontier through the O(degree) related() adjacency.
- Both paths produce the identical GraphView, so CI exercises the shape via the
  fallback; the native path is cross-layer-tested against cor's provider.
- New public types: GraphView, GraphNode, SubgraphOptions, GraphApi (the surface
  grows: export/rank/path/communities follow). isGraphAccelerationProvider guard
  added to plugin.ts.

Test: graph-subgraph.test.ts — depth tracking, direction, type filter, default-
hides-internal, node hydration on/off, maxNodes truncation, multi-seed.
2026-06-21 09:23:33 -07:00
d4de48d004 feat(8.0): related({ node }) — one-call both-direction incident edges
related({ from }) / related({ to }) each return one direction; related({ node })
unions both (every edge where the node is source OR target), deduped, in a single
O(degree) call — the indexed equivalent of merging two related() calls by hand.
The 'all edges on a noun' query the graph-viz path needs.

- RelatedParams.node: mutually exclusive with from/to (throws if combined);
  composes with type/subtype/visibility filters; natural-key ids resolved.
- Implemented as a parallel out-edge (sourceId) + in-edge (targetId) fetch through
  the O(degree) graph-index fast paths, merged + deduped by id (a self-loop appears
  once), sorted for a stable page. Full incidence is the intended O(degree) cost;
  deep offset paging of a very-high-degree node is best-effort (use the native
  edgesForNode / a graph cursor for exhaustive paging).
- db.related() parity: node resolved + honored in relationMatchesParams (matches an
  edge incident in either direction) for the historical/overlay paths.

Test: related-node-bidirectional.test.ts — both directions, equals from∪to, self-loop
dedupe, type-filter composition, default-hides-internal, node+from/to throws.
2026-06-21 08:43:55 -07:00
682e786cc3 perf(8.0): cursor pagination for the verb walk — full edge pagination O(N²) → O(N)
getVerbsWithPagination was offset-only: it re-scanned from shard 0 on every page
and early-terminated at offset+limit, so a full edge walk was O(N²) (a consumer
measured ~19k edges → 27s paging at 900/page). It now accepts an opaque resume
token (cv1:<shard>:<verbId>) that resumes the shard walk immediately AFTER the
last returned verb — O(N) total at any page size, no scale cliff.

- Stable within-shard order (sort by verb id); ids come from the path so verbs
  skipped by the cursor are never read.
- Cursor supersedes offset when present; offset path preserved for back-compat,
  and offset callers now get a usable nextCursor so they can switch to cursor
  paging. Foreign/malformed tokens decode to null → offset fallback (no throw).
- The relationships stream generator now uses cursor (was offset → O(N²)).
- Parity with the noun side (getNounsWithPagination already cursored).

Test: tests/unit/storage/verb-cursor-pagination.test.ts — a full cursored walk
visits every edge exactly once (no dup, no skip), matches the offset walk's set,
and a foreign cursor falls back gracefully.
2026-06-20 16:55:02 -07:00
4cc2088aed feat(8.0): upsert + FindParams.includeVectors + removeMany adaptive chunking
Three additive ergonomics from the API-simplification audit (no behavior change
to existing call sites):

- AddParams.upsert: create-or-update in one call. With a custom id, an existing
  entity is MERGED via the update path (merges metadata, re-embeds changed data,
  bumps _rev, PRESERVES createdAt) instead of the destructive full overwrite a
  plain add() does. Mutually exclusive with ifAbsent (throws if both set);
  ignored when no id is supplied. Wired into add(), addMany (per-item flag
  propagation), and the transact add op (routes to planTxUpdate). Kills the
  get()-then-add() round-trip for idempotent writes.
- FindParams.includeVectors: mirror of GetOptions.includeVectors — find() returns
  stored vectors when set; default stays empty (the perf contract is preserved).
  Honored on both the query and metadata-only where paths, and in db.find().
- removeMany adaptive chunking: replaced the hardcoded chunkSize=10 with
  params.chunkSize ?? storageConfig.maxBatchSize, matching addMany/relateMany —
  one storage-adaptive batch policy across all *Many methods (no thrash on
  high-latency backends).

Tests: tests/unit/brainy/upsert.test.ts (insert/merge/createdAt-preserved/
re-embed/ifAbsent-conflict/no-id/addMany/transact), find-include-vectors.test.ts
(true/default/where-path), batch-operations.test.ts (removeMany >10 items).
2026-06-20 16:34:20 -07:00
54c7c39669 feat(8.0): reserved-field enforcement — reservedFieldPolicy defaults to throw
An untyped (JS) caller that smuggles a Brainy-reserved field (confidence,
weight, subtype, visibility, service, createdBy, noun/verb, data, createdAt,
updatedAt, _rev) inside a write-path metadata bag previously got a silent
remap-or-drop — a class of bug where confidence-evolution writes no-oped for
weeks before being caught on read-back. 8.0 closes this with no silent failures.

- New BrainyConfig.reservedFieldPolicy: 'throw' | 'warn' | 'remap' (default 'throw').
  'throw' rejects the write naming every offending key + its correct write path;
  'warn' remaps with a one-shot per-key warning; 'remap' is the legacy silent path.
- Central enforceReservedPolicy gate wired into all four remap methods (add,
  update, relate, updateRelation) so live calls AND their transact()/with()
  mirrors honor it. Single-source reservedWritePath guidance shared by throw+warn.
- 'warn' now warns for EVERY reserved key (closes the gap where only
  system-managed fields warned). Dead warnDropped* helpers removed.
- Import pipeline migrated to route reserved values (confidence/weight/subtype)
  through dedicated params and strip reserved keys from extractor/customMetadata
  bags via the canonical split*MetadataRecord helpers — imports no longer trip
  the default throw.
- Tests: new reservedFieldPolicy matrix (throw/warn/remap across every write
  path + transact); remap-correctness suite reframed as opt-in 'remap'; shared
  test-factory no longer emits reserved keys in custom metadata.
2026-06-20 15:37:21 -07:00
d02e522a3e feat(8.0): id-normalization (#18) + aggregation min/max delete-safety + RC-safe release
- id-normalization (#18): `brain.newId()` (UUID v7) + v7 default ids; non-UUID string ids are
  transparently normalized to a stable UUID v5 on creation AND every lookup — get/update/remove,
  relate(from,to), related, find({connected}), getMany, removeMany, the transact op-handler, and
  db.with() overlays — with the caller's original key preserved under `_originalId`. The engine only
  ever sees a UUID; real UUIDs pass through untouched. universal/uuid.ts gains v5/v7/isUUID +
  BRAINY_ID_NAMESPACE; new utils/idNormalization.ts (coerceNewEntityId / resolveEntityId).
- aggregation min/max delete-safety: `queryAggregate` no longer leaves a stale min/max after
  deleting the current extreme — min/max now track a value multiset and recompute in-memory (no
  entity scan; that scan was the prior delete-then-hang a consumer reported). Other metrics were
  already exact across deletes. Regression test proves resolve-after-delete + correct new min/max.
- release.sh RC-safe: explicit version arg, prerelease detection (npm `--tag rc` + GitHub
  `--prerelease`), full `test:ci` gate (unit + integration), current-branch push, npm-access
  verification after publish.
- native-engine references point at `@soulcraft/cor` (8.0's partner) in user-facing strings/docs.

Unit 1461/0 · integration 599/0 · tsc clean.
2026-06-20 14:46:40 -07:00
606445cd61 feat(8.0): API simplification — remove neural()/Db.search, one storage path key, integration→0
8.0 RC cleanup toward "one place per thing, zero-config, no deprecation":

- Remove the `brain.neural()` clustering namespace (ImprovedNeuralAPI + the dead
  legacy NeuralAPI + the neural CLI + neural-only types). Similarity is `find({vector})`
  / `similar({to})`; attribute grouping is the aggregation `GROUP BY` engine. The separate
  entity-extraction / smart-import feature (NeuralImport, NeuralEntityExtractor, SmartExtractor,
  NaturalLanguageProcessor, `brain.extract()`/`brain.nlp()`) is kept.
- Remove `Db.search()`; `find()` is the one query verb (accepts a bare string or FindParams).
  Fix the bundled MCP client, which called a non-existent `brain.search(query, limit)` →
  now `find({ query, limit })`.
- Storage config: collapse to one canonical top-level `path` key. The pre-8.0 aliases
  (`rootDirectory`, `options.*`, `fileSystemStorage.*`) are removed and now THROW with the
  exact rename instead of silently defaulting to `./brainy-data` on upgrade. A single resolver
  feeds createStorage, the 7.x→8.0 migration probe, and the plugin-factory handoff, so a native
  storage provider resolves the identical root (no split-brain).
- Fix `similar({ threshold })`: the min-similarity filter was silently dropped; it is now
  applied as a post-filter on `result.score` (the documented way to bound semantic results).
- Fix `vfs.rename()` on a directory: child path updates spread the entity vector into `update()`
  and failed dimension validation; they are metadata-only updates now.
- Fix `vfs.move()`: copy+delete orphaned the content-addressed content blob (the destination
  shared the source hash, then unlink removed it). `move()` now delegates to `rename()` — an
  in-place path change that preserves the blob and the entity id, for files and directories.
- Fix streaming import: the bulk fast path never flushed mid-import nor signalled queryability.
  Entity writes are now chunked by a progressive flush interval (100 → 1000 → 5000); each chunk
  flushes and emits `progress.queryable`, so imported data is queryable during the import.
- Sweep all docs, comments, and JSDoc for the removed/changed APIs.

Integration suite: 49 files / 588 passed / 0 failed. Unit: 80 files / 1456 passed, no type errors.
2026-06-20 13:31:11 -07:00
0c4a51c24e feat(8.0): 7.x→8.0 layout migration — fix silent total data loss on first open
7.x stored every object branch-scoped under branches/<branch>/<basePath>; 8.0
stores the IDENTICAL entity structure at the storage ROOT plus the generational
_system/_generations layer. GenerationStore.open tolerates a missing manifest
(opens at gen 0), so a naive 8.0 open of a 7.x directory reported ZERO entities
and SILENTLY LOST ALL DATA. The fix is blocked in the normal init order — cor 3.0's
storage-factory legacy guard fires inside setupStorage(), five steps before the
old migration check — so a new phase runs BEFORE setupStorage().

legacyLayoutMigrationPhase() (init, between loadPlugins and setupStorage):
- Fast-path: returns immediately when there's no top-level branches/ dir (every
  native 8.0 brain + fresh dir pays only one fs.existsSync on the init hot path).
- Runs on a temporary BUILT-IN FileSystemStorage (never the plugin adapter, whose
  guard would throw). Memory/cloud/pre-built-adapter stores are a strict no-op.
- Detect via _system/migration-layout.json marker + branches/<head>/entities/.
- autoMigrate:false on a legacy layout THROWS explicit guidance (no silent loss).
- Acquire the writer lock, then COLLAPSE branches/<head>/entities/* → entities/*
  via the .gz-transparent raw primitives (read→write→delete, idempotent/resume-safe;
  NOT fs.rename — logical paths + memory-adapter incompatibility).
- Rebuild persisted counts (rebuildCounts → totalNounCount/counts.json;
  rebuildTypeCounts/rebuildSubtypeCounts → per-type stats) — the three indexes are
  rebuilt by the normal init's rebuildIndexesIfNeeded afterward.
- Finalize: stamp the flat-v8 marker (re-open no-op), drain the head branch
  (non-head branches = 7.x version history 8.0's MVCC does not import; left as-is).

Tests (tests/integration/migration-7x-to-8x.test.ts): the data-loss LOCK (a
built-in FileSystemStorage on a reshaped 7.x dir reports 0 nouns), a byte-equal
ROUND TRIP (find/related/counts equal the pre-reshape reference), IDEMPOTENCY,
the autoMigrate:false GUARD throw, and the native-flat NO-OP. RELEASES upgrade
checklist rewritten (the old note documented the opposite, lossy behavior).

1477 unit + migration 5 + db-mvcc 25 green; no init-path regression.

Follow-ups (hardening, not correctness for the common case): backupTo config
plumbing (currently a loud warning), a crash-mid-collapse resume test, and a
boundary-safe fake-plugin ordering test.
2026-06-19 13:44:03 -07:00
2c84f86815 feat(8.0): temporal range verbs — diff, history, since(gen|Date), asOf{exclusive}, transactionLog window
asOf() answers "state AT a point"; these answer "what happened BETWEEN two
points" and "one entity's whole history", all on the existing generation records.

- Extract resolveAsOfGeneration() as the shared gen|Date→{generation,timestamp}
  chokepoint (reachability + Date semantics identical everywhere). asOf()'s
  inclusive path is byte-identical — db-mvcc still 25/25.
- asOf(target, { exclusive }) — strict-before (resolved−1, clamped at gen 0,
  never a RangeError).
- db.since(Db | generation | Date) — overload; number/Date resolve via the shared
  resolver (new DbHost.resolveGeneration); EXCLUSIVE lower bound;
  since(db) === since(db.generation). Same-store guard via Db.belongsToStore.
- brain.diff(a, b) → { added, removed, modified } split by nouns/verbs. EARNS its
  name: candidate set is ONLY changedBetween(gLow,gHigh), each classified by
  existence at both endpoints + a key-order-insensitive value compare
  (new src/db/stableEqual.ts) — a touched-but-reverted / born-and-died id is in
  no bucket.
- brain.history(id, { from, to }) → every distinct version oldest→newest, each
  value === asOf(version.generation).get(id); null = removal; kind auto-detected
  (throws on UUID-space collision). New store helper generationsTouching().
- brain.transactionLog({ from, to, limit }) — INCLUSIVE generation/Date window
  (contrast since's exclusive lower bound); limit applied last.
- Compaction policy locked: diff/since THROW GenerationCompactedError below the
  horizon; history TRUNCATES to it.

Types DiffResult/HistoryVersion/EntityHistory exported from the package root.
Tests: tests/integration/db-temporal.test.ts (8 proofs incl. diff-earns-its-name,
history↔asOf cross-check, the composition proof, granularity, compaction contrast)
+ tests/unit/db/stableEqual.test.ts (6). docs/guides/snapshots-and-time-travel.md
+ RELEASES updated. 1477 unit + db-temporal 8 + db-mvcc 25 green.
2026-06-19 13:21:02 -07:00
373a48122d refactor(8.0): rename BackupData → PortableGraph (the type is interchange, not a backup)
The export()/import() document type was named BackupData, but it is not a backup:
it is the portable, versioned, partial-or-whole interchange representation of a
graph (entities + relations + optional vectors/blobs) — the unit Brainy exports
for transport between instances, versions, and products, and the payload other
artifacts embed. The actual backup is persist()/load() (the native whole-brain,
generation-preserving snapshot), so "Backup*" actively collided with that concept.

Rename every developer-visible symbol, file, doc, JSDoc and comment:
- BackupData→PortableGraph, BackupEntity→PortableGraphEntity,
  BackupRelation→PortableGraphRelation, BackupReader/Writer→PortableGraphReader/Writer,
  BackupValidation→PortableGraphValidation, isBackupData→isPortableGraph,
  validateBackup→validatePortableGraph, BACKUP_FORMAT[_VERSION]→PORTABLE_GRAPH_FORMAT[_VERSION].
- src/db/backup.ts → src/db/portableGraph.ts; test → db-portable-graph.test.ts.
- Guide, api/README, RELEASES updated.

The on-the-wire `format` tag is renamed 'brainy-backup' → 'brainy-portable-graph':
the format was introduced in 7.32.0 and has not been adopted by any consumer, so
there are no stored documents to stay compatible with — a clean rename beats
carrying a legacy tag. No deprecated aliases (nothing to alias). 7.x shipped the
same rename as 7.32.2.

1471 unit green; build clean; db-portable-graph.test.ts 17/17.
2026-06-19 12:37:23 -07:00
1264fec534 feat(8.0): version-coupling guard — a mismatched/failed native plugin fails loud, never silent JS fallback
A wrong or missing accelerator (@soulcraft/cor) used to silently degrade to the
default JS engine — the #1 source of invisible cross-repo drift. Brainy does no
plugin auto-detection (a registered plugin is always explicitly requested via
config.plugins or brain.use()), so any mismatch/failure is now fatal:

- BrainyPlugin gains optional `brainyRange` (semver range of brainy it supports);
  init() throws if the running brainy is outside it. New dep-free, prerelease-safe
  matcher pluginRangeSatisfies() (8.0.0-rc1 satisfies >=8.0.0).
- activateAll(): a plugin that THROWS during activate now re-throws (was swallowed
  to a JS fallback); a graceful decline (activate()→false) stays non-fatal but logs
  a loud warning.
- loadPlugins(): an explicitly-listed package that can't load — or isn't a valid
  plugin — throws (was a silent skip).
- Provider-key cliff: a pre-8.0 plugin that registers a legacy vector key
  ('hnsw'/'diskann') but not the 8.0 'vector' key throws (brainy 8.x reads only
  'vector', so it would otherwise run JS vectors invisibly).

Tests: tests/unit/plugin-version-coupling.test.ts (range matcher incl. rc1; range
mismatch / activate-throw / cliff / missing-package all throw; decline non-fatal).
Updated two plugin.test.ts cases that asserted the old silent-swallow behavior.
Build green; 1464 unit green. cor declares its brainyRange per handoff LV.1 #2.
2026-06-19 10:13:04 -07:00
5eaf579937 fix(8.0): real bugs surfaced by integration hardening — where-intersect, related() offset, relate() updatedAt
Three of the five bugs the rot pass surfaced (correct inputs → wrong output), fixed:

1. where-filter dropped all but the last operator on a field. getIdsForFilter()'s
   per-operator loop overwrote fieldResults each iteration, so
   { year: { greaterThan: 2009, lessThan: 2020 } } kept only lessThan. Now each
   operator's match set is AND-intersected (multi-operator-per-field works).
   (metadataIndex.ts)
2. related({ offset }) ignored the offset — getVerbs() zeroed it and smuggled it via
   an unimplemented cursor, so every page returned items [0, limit). Now the real
   offset is passed through to getVerbsWithPagination (which slices [offset,+limit)).
   (baseStorage.ts) — verified: get-relations-fix pagination test passes.
3. relate() never persisted updatedAt, so reads fabricated a fresh Date.now() each
   call (non-idempotent). Now createdAt and updatedAt share one timestamp at create.
   (brainy.ts) — verified: get-relations-fix equivalence test passes.

Follow-ups (precisely diagnosed, not papered over): exclusive range bounds —
ColumnStore.rangeQuery(field,min,max) is inclusive-only, so getIdsForRange() drops
includeMin/includeMax (metadataIndex.ts:996) and lessThan/greaterThan behave as
lte/gte when the column store is active (the dual-bound test's popularity:95 boundary
stays red); counts not rehydrating after restart; unscoped VFS path-cache.
2026-06-17 13:19:54 -07:00
010ccf816d feat(8.0): portable graph export()/import() (BackupData v1) — Db.export + polymorphic import
Re-adds the portable graph round-trip on 8.0 (deleted with DataAPI), now on the
immutable Db so it composes with the generational model.

- src/db/backup.ts: BackupData v1 engine (identical wire format to the 7.32.0 line).
  exportGraph() reads through a Db at its pinned generation; importGraph() applies the
  whole backup as ONE atomic transact() (a single generation).
- Db.export(selector?, options?) — read at this view's generation, so
  brain.asOf(g).export() is a time-travel export and brain.now().with(ops).export() a
  what-if export.
- brain.export(selector?, options?) — sugar for now().export().
- brain.import() is polymorphic: a BackupData document -> graph round-trip; a
  file/buffer -> existing foreign-file ingestion (dispatched on the 'brainy-backup'
  tag; zero migration for ingestion callers).
- Selectors (ids/collection/connected/vfsPath/predicate/whole) + edge policy
  (induced/incident/none) + includeVectors/includeContent/includeSystem; system
  entities excluded by visibility. onConflict merge/replace/skip, reembed auto/never,
  remapIds. DbHost gains storage (VFS blob bytes).
- Types exported from the package root: BackupData/BackupEntity/BackupRelation/
  ExportSelector/ExportOptions/ImportOptions/ImportResult + isBackupData.

Tests: tests/unit/db/db-backup.test.ts (10, green) — round-trip, selectors, edges,
vectors+re-embed, merge, asOf/with composition, validation. Full unit suite green.

Follow-ups: docs (8.0 guide + RELEASES + api/README), completeness adds
(since(prior).export() delta, exportStream/importStream, validate()), includeContent
filesystem test, ids-at-asOf get() refinement, @soulcraft/formats Zod schema mirror.
2026-06-16 16:38:18 -07:00
f4dea80176 feat(8.0): visibility field (public/internal/system) on nouns + verbs
Adds a reserved, top-level `visibility` field (mirrors the subtype rollout):
'public' (default, surfaced) | 'internal' (developer app-internal — hidden from
default find/count/stats, opt-in via includeInternal) | 'system' (Brainy
plumbing, library-set only).

Fixes a real leak: the VFS root entity counted in getNounCount() and appeared in
find() (a fresh brain reported 1 entity). It is now visibility:'system' →
excluded from every user-facing surface. Developers also get a first-class
hidden-unless-asked tier (e.g. learned internals vs user-exposed data).

- Reserved (RESERVED_ENTITY_FIELDS / RESERVED_RELATION_FIELDS) — spoof-proof from metadata.
- Threaded through add/relate/update/transact; surfaced top-level on reads.
- Default exclusion in counts (baseStorage), find()/related() (hard candidate
  filter via excludeVisibility — keeps topK/limit correct), and stats;
  includeInternal/includeSystem opt-ins.
- VFS root marked 'system'.

Tests: visibility.test.ts 17/17 (fresh-brain getNounCount()===0, internal hidden
+ opt-in, verb symmetry, top-level surfacing, metadata-spoof rejection). Unit
1431 green; count-synchronization integration now passes (off-by-one fixed).
2026-06-16 15:20:26 -07:00
542b52ede9 test(8.0): Tier-1 integration via deterministic embedder (suite runnable again)
The integration suite loaded the real WASM model for every test, so a full run
took ~hours and reliably aborted (vitest reporter timeout) — which is why it was
never gated and silently rotted. Brainy already separates the embedder from all
other logic, so running integration with a deterministic embedder keeps every
code path real (HNSW build+search, graph traversal, metadata filtering,
transactions, storage/sharding, VFS, aggregation, import) while making the suite
complete in ~2 min on ANY machine — no GPU, no 16 GB requirement.

- Add isDeterministicEmbedMode() — a single source of truth for the test-embedder
  switch (BRAINY_DETERMINISTIC_EMBEDDINGS, plus the legacy BRAINY_UNIT_TEST alias),
  used by EmbeddingManager (init/embed/embedBatch) and brainy's eager-init guard.
- setup-integration.ts opts into it: Tier 1 = functional end-to-end. Real-model
  semantic quality + the real embedding pipeline move to a Tier-2 suite.

Full integration now runs 482 passing / 583 in ~2 min (was un-completable). The
remaining failures are pre-existing test rot, fixed next. Unit 1414 green.
2026-06-16 12:44:14 -07:00
0951fa1da0 feat(8.0): thread commit generation through the graph-write provider contract
Graph time-travel needs an edge's existence recorded per generation so
db.asOf(g) hops resolve historically correct endpoints. The metadata layer
already threads brainy's commit generation per write; the graph write path did
not, leaving a versioned verb-endpoint store unable to answer "which edges
existed at generation g".

- GraphIndexProvider.addVerb/removeVerb gain a `generation: bigint` parameter
  (the same watermark the storage layer stamps onto the record). A provider with
  a per-generation edge chain stamps the edge at that generation; the JS baseline
  has no such chain and accepts-and-ignores it — graph time-travel is a
  native-provider capability, and the open-core path serves edges as-of-now (the
  one documented graph time-travel limitation).
- The two graph transaction operations resolve the generation via a thunk at
  EXECUTE time: the generation store assigns the batch generation only once the
  commit begins executing, after the operations are planned. The same generation
  is reused for an operation's rollback half.
- All graph-write call sites pass the in-flight generation.

Adds a spy-provider test proving the threading, execute-time resolution, and
forward/rollback generation reuse. The JS index ignores the value, so behaviour
is unchanged: unit 1402/1402, db-mvcc 25/25, bigint-contract relate/unrelate 10/10.
2026-06-16 09:42:35 -07:00
b26d3d42b3 fix(8.0): drive query-cap off MemAvailable + floor auto-detected caps
The auto-detected query-limit cap was computed from os.freemem() (MemFree),
which excludes reclaimable page cache. On hosts that memory-map large index
files the cache holding those pages dominates RAM, so MemFree collapses to a
sliver and the cap cratered to its floor on perfectly healthy machines,
rejecting legitimate find() calls.

- getAvailableMemory() now prefers /proc/meminfo MemAvailable (counts
  reclaimable cache), falling back to os.freemem() off-Linux, then a 2 GB
  constant where no OS module is available.
- Auto-detected caps (container + free-memory tiers) are floored at
  MIN_AUTO_QUERY_LIMIT (10_000); a transient low reading can never throttle
  queries to a near-useless ceiling. Consumer-supplied maxQueryLimit /
  reservedQueryMemory bypass the floor — an explicit caller knows their box.

Also scrubs two stale comments referencing the removed cloud storage
adapters and the retired mmap-vector backend: 8.0's native vector provider
persists its own .dkann file via getBinaryBlobPath, so the old rootDirectory
hook does not apply on this line.

Tests: memoryLimits 26/26 (4 new floor regressions), unit 1398/1398,
find-limits + db-mvcc + api-parameter-validation 37/37.
2026-06-16 09:01:45 -07:00
35b9d7ef43 refactor(8.0)!: remove orphaned zero-config subsystem + dead cloud/progressive-init storage vestige
The old config-generation subsystem (src/config/ + autoConfiguration.ts) was
superseded during the 8.0 rework and never wired into init(): it emitted settings
for a partitioning subsystem that no longer exists and probed deleted cloud env
vars. The live zero-config path is inline — recall preset → HNSW knobs, storage
auto-detect, auto persistMode, container-memory-aware cache sizing.

The storage progressive-init / cloud-detection cluster was equally dead after the
cloud adapters were dropped: isCloudStorage() is permanently false (no overriders),
scheduleBackgroundInit/runBackgroundInit were never called (the latter an empty
body), initMode was never assigned, and Brainy.isFullyInitialized()/
awaitBackgroundInit() were always-trivial with zero callers. scheduleCountPersist()
collapses to its only-ever-taken immediate write-through path.

Removed:
- src/config/{index,zeroConfig,storageAutoConfig,modelAutoConfig,sharedConfigManager}.ts
- src/utils/autoConfiguration.ts + the inert BrainyZeroConfig export
- Brainy.isFullyInitialized()/awaitBackgroundInit() (+ BrainyInterface decls)
- InitMode type, isCloudStorage/detectCloudEnvironment/resolveInitMode,
  scheduleBackgroundInit/runBackgroundInit/ensureValidatedForWrite and their state
- Dead cloud env-var probes (K_SERVICE/K_REVISION/AWS_LAMBDA_FUNCTION_NAME/
  FUNCTIONS_TARGET/AZURE_FUNCTIONS_ENVIRONMENT)

Kept (verified live): production-detection logging (environment.ts), container-
memory cache sizing (memoryDetection/paramValidation), on-disk hash bucketing
(sharding.ts).

Docs: scrubbed deleted-subsystem references (JS quantization knobs, cloud/OPFS
adapters, partitioning, old zero-config API) across 14 files; deleted two wholly-
obsolete feature docs (complete-feature-list, v3-features); rewrote
architecture/zero-config for 8.0.

~3,700 LOC removed. Build clean; 1392 unit + 24 db-mvcc green.
2026-06-15 11:11:21 -07:00
00d3203d68 refactor(8.0)!: remove distributed clustering subsystem — inert/orphaned, scale is single-process + native provider
The distributed-clustering subsystem never ran in production: it was inert,
orphaned dead code (faked consensus, stub replication, no live wiring, and it
did not interoperate with the 8.0 Db API). Brainy 8.0 is a single-process
library. Scale is single-process + the optional native provider
(@soulcraft/cortex, on-disk DiskANN to 10B+ vectors) + per-tenant pools +
horizontal read scaling (many reader processes, one writer).

Removed:
- src/distributed/ entirely (coordinator, shardManager, cacheSync,
  readWriteSeparation, queryPlanner, healthMonitor, configManager,
  hashPartitioner, shardMigration, domainDetector, storageDiscovery, http/network
  transports). ReaderMode/HybridMode relocated to src/storage/operationalModes.ts
  (slimmed to the live surface).
- src/types/distributedTypes.ts; config.distributed field + JSDoc;
  coreTypes distributedConfig; memoryStorage distributedConfig persistence.
- DistributedRole enum + src/config/distributedPresets.ts and the orphaned
  src/config/extensibleConfig.ts (config/augmentation registry built on removed
  cloud adapters + distributed presets), plus their src/index.ts re-exports.
- 13 BRAINY_* cluster env vars; the storage setDistributedComponents hook;
  enableDistributedSearch (dead config flag); the metadata partition field;
  the distributed_ reserved key prefix.
- Orphaned src/storage/readOnlyOptimizations.ts (zero importers).
- Tests targeting the subsystem: distributed-demo, distributed-cluster helper,
  distributed-transactions, sharding-transactions.
- Docs: EXTENDING_STORAGE.md (deleted); scrubbed distributed/cluster/Raft/
  shard-manager/multi-node prose from v3-features, enterprise-for-everyone,
  augmentations-actual, complete-feature-list, vfs/README, vfs/ROADMAP,
  vfs/VFS_CORE, capacity-planning, transactions, MIGRATION-V3-TO-V4,
  storage-architecture; reframed scale prose to the 8.0 model.

Kept: src/storage/sharding.ts (local-disk 256-bucket directory sharding via
getShardIdFromUuid — used live by baseStorage, unrelated to clustering);
the multi-process mode: 'reader' | 'writer' roles; semantic/HNSW clustering.

RELEASES.md: added a removed-surfaces row documenting the cut and the 8.0
scale model.
2026-06-15 10:37:39 -07:00
f8e0079d3f feat(8.0): zero-config finalize + cut JS quantization (config.vector = recall + persistMode) 2026-06-15 10:08:51 -07:00
1f7e365a4e chore(8.0): final pre-RC1 sweep — API consistency, named errors, orphans, zero-cast codebase 2026-06-11 14:51:00 -07:00
970e08c466 feat(8.0): reserved-field contract — one canonical location, typed prevention, unified read/write
Brainy-owned field names (noun/verb, subtype, createdAt, updatedAt,
confidence, weight, service, data, createdBy, _rev) now have exactly one
home — top level — enforced by three layers driven from a single source of
truth, src/types/reservedFields.ts (RESERVED_ENTITY_FIELDS /
RESERVED_RELATION_FIELDS, exported):

1. Compile time — AddParams/UpdateParams/RelateParams/UpdateRelationParams
   metadata (and the transact() ops that extend them) reject a literal
   reserved key as a TypeScript error while keeping generic T ergonomics
   (typed bags, untyped brains, index-signature shapes, and a documented
   exemption for T-declared reserved keys). Pinned by @ts-expect-error
   type tests run under vitest typecheck mode on every unit run.

2. Write time — the 7.x update() remap is ported to 8.0 and extended to
   every write path: add/update/relate/updateRelation, their transact()
   mirrors, and db.with() overlays. User-settable fields lift to their
   dedicated param (top-level wins when both are supplied — closes the 7.x
   trap where update({metadata:{confidence}}) silently no-oped), and
   system-managed fields drop with a one-shot warning naming the right
   path. A remapped subtype satisfies subtype-pairing enforcement exactly
   like a top-level one.

3. Read time — every storage combine goes through one canonical hydration
   helper (hydrateNounWithMetadata / hydrateVerbWithMetadata over
   splitNoun/VerbMetadataRecord), so reserved fields surface ONLY top-level
   and entity/relation.metadata carry ONLY custom fields on live reads,
   batch reads, paginated listings, getRelations by source/target, streamed
   verbs, and historical asOf() materialization alike.

Read-path echoes found and fixed (previously the full stored record —
including the verb type key — leaked inside metadata): noun pagination,
verb pagination, getVerbsBySource/ByTarget (adjacency + shard fallback),
getVerbsBySourceBatch (which also dropped subtype/data), and the
filesystem verb stream. getRelations() results now surface
confidence/updatedAt top-level via verbsToRelations, updateRelation() no
longer erases service/createdBy, relate() persists its top-level
confidence/service params, and the dead convertHNSWVerbToGraphVerb echo
path is deleted. Import paths (CLI extract, deduplicator, coordinators,
neural import) write confidence through the dedicated param instead of the
bag. UpdateRelationParams is now exported from the package root.

Documented for consumers in docs/concepts/consistency-model.md ("Reserved
fields") and RELEASES.md. Regression tests ported from the 7.x fix and
extended to the full 8.0 contract (17 runtime tests + 41 type-level
assertions); full unit suite 1427/1427, db-mvcc integration 24/24.
2026-06-11 13:13:09 -07:00
c44678390e feat(8.0): brain.fillSubtypes migration helper + pre-RC1 gap closure
- brain.fillSubtypes(rules): idempotent subtype back-fill for pre-8.0 data.
  One rule per NounType/VerbType (literal default or per-entry function);
  fills only entries still missing a subtype through the public update()/
  updateRelation() paths; returns { scanned, filled, skipped, errors, byType }.
  Full unit suite in tests/unit/brainy/fill-subtypes.test.ts.
- Fix getNouns/getVerbs pagination hasMore (peek one past the window) —
  was permanently false, silently truncating every multi-page walk.
- find({ near }) without near.id now throws a teaching error instead of an
  opaque storage sharding failure; CLI --threshold without --near applies a
  plain score floor.
- CLI init/close audit: every one-shot command init()s, close()s, and exits
  explicitly; delete the unmaintained interactive REPL; replace the cloud-era
  storage subcommands with status/batch-delete; new types/validate commands.
- requireSubtype JSDoc now documents the 8.0 default-on contract; audit()
  recommendation points at fillSubtypes.
- Docs: data-storage-architecture rewritten to the real 8.0 on-disk layout;
  README storage section reflects filesystem+memory and snapshots; eli5 and
  SEMANTIC_VFS /as-of/ semantics corrected; internal tracker IDs and
  .strategy references scrubbed from published files.
2026-06-11 10:53:55 -07:00
478fa176f2 refactor(8.0): delete DataAPI — superseded by Db persist/restore + import API + stats
The legacy backup/import/export/stats facade (src/api/DataAPI.ts) drifted
from the modern entity shape and every job it did now has a first-class
surface. Delete it and brain.data(), and rewire the CLI:

- data-stats → brain.stats() (full BrainyStats report: per-type breakdowns,
  indexed fields, index health, storage backend, writer lock, version)
- clean → brain.clear()
- export → alias of snapshot; a db.persist() snapshot is the full-fidelity
  export format (open with Brainy.load, load wholesale with brainy restore);
  external data ingestion remains brainy import (UniversalImportAPI)

Rewiring clean onto brain.clear() exposed two real bugs, both fixed:

- clear() left this.graphIndex undefined forever — any graph-touching call
  afterwards (relate, getNeighbors, stats) crashed. clear() now re-resolves
  the graph index exactly as init() does and re-wires the shared UUID↔int
  resolver, and re-resolves the metadata index with the same provider
  fallback as init().
- storage.clear() reset the legacy totals but not the per-type/subtype
  count rollups or id→type caches, so stats() reported phantom counts for
  deleted entities. Both adapters now delegate derived-state reset to
  reloadDerivedState(), the same path restore-from-snapshot uses.

One-shot CLI commands (data-stats, clean, snapshot/export, restore,
history, generation) now close the brain and exit explicitly — global
cache timers otherwise keep the process alive holding the writer lock.

Verified: build clean, 1383/1383 unit tests, 24/24 db-mvcc integration,
plus an end-to-end CLI smoke (add → data-stats → export → clean →
data-stats).
2026-06-11 09:05:12 -07:00
cc8037db10 docs(8.0): consistency-model concept + snapshots guide — Db API replaces branching docs 2026-06-11 08:37:26 -07:00
e5feae4104 feat(8.0): full query surface at historical generations via ephemeral index materialization
Historical Db values (now()/asOf() pins that history has moved past) now
serve the COMPLETE query surface - vector/hybrid search, graph traversal,
cursor pagination, and aggregation - by materializing ephemeral in-memory
indexes over the exact at-generation record set. The historical-query
throw is gone; NotYetSupportedAtHistoricalGenerationError is deleted.

Materializer (Brainy.materializeAtGeneration):
- Copies the at-G record set (live bytes for ids untouched since the pin,
  immutable before-images otherwise) into a fresh MemoryStorage; a final
  reconciliation pass under the commit mutex makes the copy exact even
  when transactions commit mid-build.
- Opens a read-only Brainy over the copy: init rebuilds the metadata and
  graph-adjacency indexes from the records; the vector index is built by
  inserting every at-G vector (the at-G HNSW graph never existed on disk,
  so there is nothing to restore). Host embedder and aggregate definitions
  are shared - no second model load, aggregates backfill at-G values.
- Cost is the documented contract: O(n at G) time and memory, ONCE per Db
  (handle cached; freed by release(), with a FinalizationRegistry backstop
  that also closes leaked readers). A native VersionedIndexProvider serves
  the same reads from retained segments with no rebuild.

Db routing (src/db/db.ts): metadata-level find()/related() keep the free
record path; index-only dimensions (query/vector/near/connected/cursor/
aggregate/includeRelations/non-metadata modes) route to the cached
materialization; unsupported where-operators on the record path re-route
there too instead of erroring. Speculative with() overlays keep the one
honest boundary - SpeculativeOverlayError (overlay entities carry no
embeddings, so index reads over them would be silently incomplete);
metadata find()/get()/filter related() work on overlays.

UpdateParams.vector contract now honored: an explicit pre-computed vector
applies directly (with dimension validation) in update() and transact
update ops, re-indexing HNSW - previously it was silently ignored unless
data also changed.

GraphAdjacencyIndex: adjacency now derives from the two verb-id LSM trees
filtered through the live-verb tombstone set (entity->entity edge trees
deleted - they carried no verb ids, so removeVerb could never tombstone
them and traversal served stale neighbors forever). Neighbor reads batch-
load live verbs via the unified cache; addVerb seeds the cache.

Proofs (tests/integration/db-mvcc.test.ts, 24 green): historical vector
search finds old vector placement including since-deleted entities;
historical graph traversal walks the old wiring after a rewire; historical
aggregation computes at-G group values; asOf() pins get the same surface;
the materialization builds once per Db and release() closes the ephemeral
reader (it refuses reads afterwards); overlays throw the documented error.
ADR-001 updated to the no-throws historical model.
2026-06-11 08:12:11 -07:00
8f93add705 feat(8.0)!: delete fork/branch/commit/history/versions — superseded by the Db API
The COW version-control surface (fork, branches, checkout, commit,
getHistory/streamHistory, asOfCommit, brain.versions) is gone, along with
its subsystems: src/versioning/, the COW object store (CommitLog,
CommitObject, RefManager, TreeObject), HistoricalStorageAdapter, and the
TypeAwareHNSWIndex path it kept alive. The Db API (now/transact/asOf/
with/persist/restore) is the one versioning model in 8.0.

Survivors and replacements:
- BlobStorage survives (the VFS stores file content through it), relocated
  to src/storage/blobStorage.ts with binaryDataCodec.ts; its adapter
  interface is now BlobStoreAdapter, slimmed to the consumed surface
  (write/read/has/delete/getMetadata + MIME-aware compression policy).
- brain.migrate() backup branches are replaced by persist-before-migrate:
  MigrateOptions.backupTo persists a hard-link snapshot of the current
  generation before any transform runs; MigrationResult.backupPath reports
  it, and brain.restore(path) brings it back wholesale.
- CLI: cow.ts (fork/branch/checkout/history/migrate) is replaced by
  snapshot.ts — snapshot <path>, restore <path>, history (tx-log),
  generation.
- New public read API: brain.transactionLog({limit}) exposes the reified
  tx-log (generation/timestamp/meta, newest first) that backs the CLI
  history command; TxLogEntry is exported.

Tests: superseded suites deleted; fork/commit blocks excised from shared
suites; BlobStorage tests relocated + reworked against the slimmed store;
migration tests now prove the backupTo snapshot/restore round trip; new
transactionLog coverage in db-mvcc.
2026-06-10 15:22:47 -07:00
431cd64406 feat(8.0): generational MVCC storage + Datomic-style Db API (now/transact/asOf/with/persist)
One mechanism replaces the COW and versioning subsystems: immutable
generation-stamped records behind a Datomic-style database value.

Record layer (src/db/generationStore.ts):
- Monotonic generation counter in _system/generation.json; bumped once per
  transact() commit and once per single-operation write (storage hook), so
  brain.generation() is always a meaningful watermark.
- Commit protocol: stage before-images + tx.json delta -> fsync -> execute
  batch via TransactionManager -> atomic tmp+rename of _system/manifest.json
  (the rename IS the commit point) -> append _system/tx-log.jsonl.
- Crash recovery on open rolls uncommitted generations back byte-identically
  and forces an index rebuild; refcounted pins gate compactHistory(), which
  records a horizon (asOf below it throws GenerationCompactedError).

Db API:
- Db: get/find/search/related pinned at a generation, with() speculative
  overlays, since() diffs, persist() hard-link-farm snapshots, timestamp,
  generation, release() + FinalizationRegistry backstop.
- Brainy: now() O(1) pin, transact(ops, {meta, ifAtGeneration}) atomic batch
  (GenerationConflictError CAS), asOf(generation|Date|path), restore(path,
  {confirm}), compactHistory(), generation(), static open() + load().
- get()/metadata find()/related() are fully correct at any reachable pinned
  generation; index-accelerated queries at historical generations throw
  NotYetSupportedAtHistoricalGenerationError - never silently-wrong results.
- VersionedIndexProvider (generation/isGenerationVisible/pin/release) in
  plugin.ts: feature-detected, balanced pin/release in lockstep with Db
  lifecycle, post-commit applier + replay-gap model documented.

Storage primitives (BaseStorage + filesystem/memory adapters): raw-object
read/write/list/remove, fsync barrier, noun/verb raw before-image capture,
tx-log append, snapshotToDirectory (hard-link farm; byte-copy fallback and
append-in-place exceptions), restoreFromDirectory + derived-state reload.

Proof suite (tests/integration/db-mvcc.test.ts + tests/unit/db/): isolation
across 200 mutations, batch atomicity under injected execution failure,
ifAtGeneration CAS, snapshot immunity to source mutation, compaction safety
under pins, with() overlay isolation, generation monotonicity across
reopen, crash consistency through the real recovery path, and versioned
provider pin/release balance. Design record in
docs/ADR-001-generational-mvcc.md.
2026-06-10 14:14:07 -07:00
49e49483d1 fix(8.0): createIndex resolves the canonical 'vector' provider key — drop diskann/hnsw key lookups + legacy migration APIs
createIndex() still resolved the retired 'diskann' and 'hnsw' provider
keys and never looked up 'vector', so an 8.0-era plugin registering its
vector engine under the canonical 'vector' key silently never engaged
and Brainy always fell back to the built-in JS HNSW index. createIndex()
now resolves only getProvider('vector') (same factory call shape as the
old hnsw path) and falls back to setupIndex().

The brainy-side mode/migration machinery is obsolete in the 8.0 provider
world — the registered engine adapts internally (in-memory / hybrid /
on-disk selection is the provider's job, not Brainy's):

- delete migrateToDiskAnn() / migrateToHnsw() and the ADR-002
  index-engine migration block
- delete diskAnnAutoEngageConditionsMet() / instantiateDiskAnn()
- narrow HNSWConfig.type to 'vector' and drop the diskann tuning block
  (coreTypes.ts)
- well-known provider key lists + diagnostics now report 'vector'
  instead of the never-registered 'hnsw' key
- plugin.ts docs: 'vector' is the only vector-index key consulted; the
  pre-8.0 'hnsw'/'diskann' keys are retired

The schema-migration machinery (migrate(), checkMigrations(),
MigrationRunner, autoMigrate) serves data migrations and is untouched.
2026-06-10 11:29:05 -07:00
2427bb7960 feat(8.0): u64 BigInt graph provider contract — punch list a-d,g,h
GraphIndexProvider now speaks BigInt at the boundary (D.2 mirror):
- getNeighbors/getVerbIdsBySource/getVerbIdsByTarget take entity ints and
  return entity/verb ints as bigint[]
- new REQUIRED verbIntsToIds(bigint[]) batch reverse resolver (L.7
  identity-fingerprint design — verb ids are UUIDs by contract, so the
  provider-side interning is losslessly reversible)
- addVerb(verb, sourceInt, targetInt) returns the interned verb int;
  removeVerb(verbId) joins the contract

Coordinator (brainy.ts) owns ALL UUID <-> int conversion: getOrAssign on
writes, getInt on reads (unmapped UUID -> empty result without calling the
provider), getUuid / verbIntsToIds on returns, plus a bounded ~100k-entry
insertion-order warm cache for verb-int -> verb-id pairs fed by addVerb
returns and resolver results. GraphVerb gains derived sourceInt/targetInt
(populated at add time, never persisted). findConnectedSubtype gains a
native fast path that routes single-type single-subtype outgoing BFS
through the provider when available.

JS GraphAdjacencyIndex satisfies the contract while staying string/u32-keyed
internally: entity ints resolve through the shared entity-id mapper (threaded
in by the coordinator on init/fork/checkout), verb ints come from an
in-process append-only interning map re-derived from storage on
rebuild/cold-start. ColumnStoreProvider widens the same way: addEntity/
removeEntity take bigint, sortTopK/filteredSortTopK return bigint[].

relate() now rejects a caller-supplied id with a teaching error — verb ids
are brainy-generated UUIDs by contract in 8.0 (previously a passed id was
silently ignored). No Roaring64 provider-boundary decode site exists yet;
the JS-internal column store stays Roaring32 and the Treemap decoder lands
with the first consumer of provider-returned filter buffers.

Public brain API unchanged. 1413 tests green (+10 new BigInt contract tests).
2026-06-10 10:45:45 -07:00
62f6472fa0 chore(8.0): delete vectorStore:mmap wiring — dead in the 8.0 provider world
The mmap-vector backend was a 2.x-era accelerator for the JS HNSW read path:
a native provider registered under 'vectorStore:mmap' supplied a single-file
mmap'd vector store, and JsHnswVectorIndex tried it before per-entity storage
reads with lazy write-back migration.

In the 8.0 provider world nothing registers that key — the native plugin's
3.0 line replaces the entire vector index under the 'vector' provider key
(vectors live inside its own index file), and the open-core path never had
an mmap provider. The wiring is unreachable; per the no-unwired-code rule
it goes away:

- src/hnsw/mmapVectorBackend.ts deleted (175 LOC)
- wireMmapVectorBackend() + its init call site removed from brainy.ts
- VectorStoreMmapProvider + VectorStoreMmapInstance contracts removed
  from plugin.ts
- JsHnswVectorIndex loses the vectorBackend field, setVectorBackend(),
  and the mmap-first branches in getVectorSafe/preloadVectors — the
  storage + UnifiedCache path is now the single read path
- tests/unit/hnsw/mmap-vector-backend.test.ts deleted

The 7.x line keeps the wiring and got the capacity-NaN bugfix as 7.31.3
(see the platform handoff mmap thread). EntityIdMapperProvider stays — the
connections codec and the id mapper still implement it.

1403/1403 tests, build clean.
2026-06-10 09:40:38 -07:00
42159f2bd7 chore(8.0): collapse dead defensive guards + redundant polyfills
Follow-up to the browser/cloud/threading sweep — everything that was guarding
against unreachable runtimes is now dead.

cacheManager.ts: Environment enum + this.environment field removed (only NODE
was reachable). StorageType narrowed to MEMORY + FILESYSTEM. navigator.deviceMemory
and performance.memory paths in detectOptimalCacheSize + detectAvailableMemory
deleted; node:os is the sole source. environmentConfig keeps the index signature
for future per-runtime tuning but only the node slot is wired.

Dead 'typeof window === undefined' guards (the check is always true on 8.0):
paramValidation, structuredLogger, mutex, brainy.ts stats block, and
networkTransport ws-dynamic-import all collapsed. IntegrationLoader's inverse
guard ('!== undefined' returning 'browser') deleted. mutex's createMutex default
type simplified from "(typeof window === 'undefined' ? 'file' : 'memory')" to
plain 'file'.

Redundant TextEncoder/TextDecoder polyfills: Node 22+ ships both as globals.
src/utils/textEncoding.ts deleted (applyTensorFlowPatch was named for a defunct
dep and only re-assigned globals already present). setup.ts collapsed to an
empty stable import target. unified.ts loses its applyTensorFlowPatch re-export.

modelAutoConfig.getModelPath() loses the unreachable trailing fallback now
that isNode() is effectively the only branch the function ever takes.

jsonProcessing.ts left unchanged — its 'typeof document' checks are value-shape
guards on the parsed JSON, not environment detection.
2026-06-09 16:46:16 -07:00
cb16a39a0c chore(8.0): Phase A + B — purge all @deprecated APIs + cacheManager dead branches
PHASE A — every @deprecated marker resolved (~25 removed)

src/coreTypes.ts
- GraphVerb: dropped the "@deprecated Will be replaced by HNSWVerbWithMetadata"
  note. GraphVerb IS the canonical contract — every public API path speaks
  it. Removed the `source` and `target` legacy alias fields (renamed `from`
  / `to` callers years ago; no consumers remain).
- StorageAdapter: dropped the "@deprecated Use getNouns() with filter" notes
  from `getNounsByNounType`, `getVerbsBySource`, `getVerbsByTarget`,
  `getVerbsByType`. They were never deprecated in spirit — they're useful
  non-paginated convenience wrappers over the paginated `getNouns()` /
  `getVerbs()` surface. Refreshed JSDoc to explain the role.

src/types/graphTypes.ts
- Mirrored the GraphVerb cleanup: dropped `source` + `target` legacy aliases.
  sourceId + targetId are the canonical fields.

src/import/ImportCoordinator.ts
- Deleted the entire DeprecatedImportOptions interface block (130 LOC). It
  was a v3 → v4 migration tool using the `?: never` trick to force
  compile errors on dropped options. Five major versions in, the
  forced-error gate is no longer pulling its weight.

src/triple/TripleIntelligence.ts
- Deleted `TripleIntelligenceEngine = any` alias. No consumers; superseded
  by `TripleIntelligenceSystem`.

src/storage/cow/binaryDataCodec.ts
- Deleted `wrapBinaryData()`. The COW dispatch layer in `baseStorage.ts`
  routes by key-prefix convention; the old guess-by-JSON-parse codec was
  fragile (compressed bytes can accidentally parse as JSON) and unused.

src/storage/baseStorage.ts
- Refreshed JSDoc on `convertHNSWVerbToGraphVerb()` — the method is alive
  and used internally; the deprecation note was stale.

src/embeddings/wasm/AssetLoader.ts → DELETED
- File was @deprecated since model weights moved into the Candle WASM
  bundle. No consumers. Removed from `embeddings/wasm/index.ts` exports.

src/embeddings/wasm/types.ts
- Dropped @deprecated tags on `TokenizerConfig` + `TokenizedInput` — still
  used by `WordPieceTokenizer` (auxiliary tokenization). Deleted
  `InferenceConfig` (truly dead). Updated `embeddings/wasm/index.ts`
  exports.

src/utils/metadataIndex.ts
- Deleted `getIdsForCriteria()` — pure alias for `getIdsForFilter()`, no
  consumers.

src/interfaces/IIndex.ts
- Removed RebuildOptions.lazy (deprecated and unused; lazy mode is auto-
  selected by available-memory detection).

src/hnsw/hnswIndex.ts
- Removed `getNouns()` (returned a full Map; deprecated in favor of
  pagination years ago and no consumers in src/ or tests/).

PHASE B — cacheManager dead StorageType branches

src/storage/cacheManager.ts
- Collapsed the `isRemoteStorage` flag and its 15 dead conditional branches
  spanning calculateOptimalCacheSize() and calculateOptimalBatchSize().
  After dropping cloud adapters in step 7, `coldStorageType` is never S3
  or REMOTE_API; the branches were dead. Cache sizing and batch sizing now
  honor the filesystem-only reality with simpler heuristics.
- Collapsed `detectWarmStorageType()` + `detectColdStorageType()` from
  ~40 LOC of environment-+-availability branching to 2-line returns of
  `StorageType.FILESYSTEM`. Brainy 8.0 ships filesystem + memory only.

NOT YET — Phases C-G in follow-up commits

C: storageAutoConfig.ts + zeroConfig + extensibleConfig + sharedConfigManager
D: TODO/FIXME sweep across src/
E: skipped tests + the parallel-test race condition
F: docs deep clean (BATCHING, augmentations, READMEs)
G: browser support drop (the last 2 @deprecated)

VERIFICATION

- npx tsc --noEmit: clean
- npm test: 1408 / 1409 (same pre-existing race-condition outstanding)
2026-06-09 15:33:56 -07:00
780fb6444b feat(8.0)!: flip requireSubtype default to true (BRAINY-8.0-SUBTYPE-CONTRACT § C-1)
Brainy 8.0 makes subtype required by default on every public write path
(`add`, `addMany`, `update`, `relate`, `relateMany`, `updateRelation`,
import). Per the locked C-1 contract, every entity and relation gets a
non-empty subtype string by the time the storage layer sees it.

OPT-OUT REMAINS FULLY SUPPORTED

The runtime flag is still consumer-controlled. Three opt-out paths
cover migration / legacy fixtures / typed escape:

- `new Brainy({ requireSubtype: false })` — last-resort: turn off the
  contract entirely. Recommended only for migration windows or test
  fixtures that legitimately can't supply a subtype.
- `new Brainy({ requireSubtype: { except: [NounType.Thing, ...] } })` —
  per-type allowlist: strict everywhere except the listed types.
- `brain.requireSubtype(type, options)` — per-type registration with
  optional vocabulary. Composes with the brain-wide flag.

Default is now `true`. Opt-out is explicit and documented; nothing
silently degrades.

TEST SWEEP

Bulk-applied `requireSubtype: false` to every `new Brainy({...})` call
site across 120 test files. Three sed patterns covered the shapes:
  - `new Brainy({` → `new Brainy({ requireSubtype: false,`
  - `new Brainy<T>({` → `new Brainy<T>({ requireSubtype: false,`
  - `new Brainy()` → `new Brainy({ requireSubtype: false })`

tests/helpers/test-factory.ts → createTestConfig() defaults
`requireSubtype: false` so test files using the helper inherit the
opt-out without per-site edits.

The test sites that DO exercise subtype semantics (the
subtype-and-facets suite, the strict-mode-self-test suite, the verb-
subtype-and-enforcement suite, etc.) already pass real subtypes — they
were the 7.30.x acceptance tests for this contract. Those tests
continue to pass unchanged.

CHANGES

src/brainy.ts
- normalizeConfig() — `requireSubtype` default `false` → `true`.
  Comment refreshed to document the three opt-out paths.

tests/* (120 files)
- Bulk-edited brain construction sites. No functional test changes; the
  opt-out preserves the test author's original intent.

tests/helpers/test-factory.ts
- createTestConfig() base config gains `requireSubtype: false`.

NO-OP for consumers who were already passing subtype on every write.

For consumers who weren't, the upgrade path is one of the three opt-out
forms above. Migration recipe documented in 8.0 release notes (next
commit).

VERIFICATION

- npx tsc --noEmit: clean
- npm test: 1408 / 1409 (same pre-existing race-condition outstanding;
  no other regressions from the flip)
2026-06-09 14:58:25 -07:00
221fc45889 fix(8.0): implement multi-hop subtype BFS in pure JS (open-core works standalone)
Previous (post-step-12) state shipped a regression: removing the
`depth > 1 + subtype` throw left the open-core JS path silently
returning wrong results — the verbType walk reached depth N, but the
subtype intersection only filtered at depth 1. Multi-hop subtype
queries on a brainy without cortex returned all reachable entities,
ignoring the subtype filter at hops 2+.

That violated the open-core boundary in two ways:
- Brainy MIT users got a silent-wrong-answers bug on a public API.
- The "fix" of the day before suggested routing through cortex's
  native `findConnectedSubtype` — which would have gated a legitimate
  brainy API behind a paid product. That's bait-and-switch; the
  platform principle is that brainy MIT works standalone.

THE FIX

Implement multi-hop subtype-aware BFS in pure JS. Per-hop predicate
checks both verbType (when supplied) and subtype at every edge
crossing. Cycle guard via `visited`. Stops at `depth` or when the
frontier empties.

Complexity scales with branching factor × depth, not total graph size.
At a typical branching factor of ~50 outgoing edges per node, depth=3
visits ~125 K edges — well under a second on the open-core JS path.
That's fast enough for any reasonable production workload.

If a registered graph-index provider exposes a faster native
`findConnectedSubtype` (cortex's D.3 native BFS is the obvious
example), brainy can detect and route through it via the existing
provider-detection pattern. That's an OPTIMIZATION, not a correctness
requirement. The JS path is the contract; native is a drop-in
replacement.

CHANGES

src/brainy.ts (executeGraphSearch)
- Deleted the post-throw assumption that subtype filtering only worked
  at depth=1. Replaced with a real BFS.
- New inner function `bfsWithSubtype(anchor, walk)`:
  - Direction handling: 'in' walks incoming edges, 'out' outgoing,
    'both' unions both at every hop.
  - Per-hop: getRelations({ from|to: node, type: via, subtype })
    — pulls edges already filtered by verbType + subtype. Defensive
    re-check on edge.subtype in case a future getRelations impl
    widens its filter.
  - Cycle guard: visited set seeded with the anchor. Never re-enters
    the anchor; never revisits a node.
- Subtype-absent path unchanged — still calls `neighbors()` for the
  fast verbType-only BFS.

NO-OP for the subtype-absent case. Multi-hop + subtype now works
correctly on the open-core JS path at any depth.

VERIFICATION

- npx tsc --noEmit: clean
- npm test: 1408 / 1409 (same pre-existing race-condition outstanding;
  no other regressions)
2026-06-09 14:54:31 -07:00
ed75f250ec refactor(8.0): SubtypeRegistry hook + drop multi-hop subtype throw (scaffold steps 11-12)
Two small additions per BRAINY-8.0-SUBTYPE-CONTRACT § C-3 + § C-4.

STEP 11 — SubtypeRegistry declaration-merging hook (§ C-3)

src/types/brainy.types.ts
- New empty `SubtypeRegistry` interface. Consumers extend via TypeScript
  module augmentation to declare per-`(NounType, subtype)` metadata
  shapes. Brainy ships no entries; every entry is a consumer concern.
- Usage pattern documented inline:
    declare module '@soulcraft/brainy' {
      interface SubtypeRegistry {
        'person:employee': { employeeId: string; department: string }
        'document:invoice': { invoiceNumber: string; amount: number }
      }
    }
- Consumers with no entries see no type-level change (metadata stays T = any).

src/index.ts
- Public export of `SubtypeRegistry` as a type so consumers can declare-merge it.

The typed `add<NounType.Person, 'employee'>()` overloads + `brain.fillSubtypes()`
migration helper are NOT in this commit — they require the C-1 runtime
flip to land first (per step 10 deferral). The interface stub ships now
so external consumers can start the declare-merging pattern in their own
code immediately.

STEP 12 — drop the multi-hop subtype throw (§ C-4)

src/brainy.ts
- Deleted the `find({ connected: { subtype, depth > 1 } })` throw that
  7.30.x emitted ("Use depth: 1, or wait for Cortex native traversal").
- Replaced the throw block with an explanatory comment: cortex's D.3
  `findConnectedSubtype` handles the multi-hop case natively;
  open-core JS falls back to per-hop edge enumeration (correct but slow
  past ~10 K reachable edges per source).

Per BRAINY-8.0-RENAME-COORDINATION § G.3.b (cortex-confirmed): the native
graph index is ready for unbounded `depth` from brainy with no rebuild
required, and BFS-with-cycle-guard semantics hold at any depth.

VERIFICATION

- npx tsc --noEmit: clean
- npm test: 1408 / 1409 (same pre-existing race-condition outstanding)
2026-06-09 14:29:09 -07:00
1eb0ffc341 docs(8.0): document subtype required-by-default deferral (scaffold step 10)
Per BRAINY-8.0-SUBTYPE-CONTRACT § C-1, brainy 8.0 should flip the
runtime `requireSubtype` default from `false` to `true`. Tried that here
and it broke 235 tests — every test that does
`brain.add({ type, data })` without supplying a subtype now throws.

That's the right contract direction but the wrong commit to ship it in.
Each of those 235 sites needs to either:
- Start passing `subtype: 'test'` (or a real subtype value), or
- Set `requireSubtype: false` on the test brain config.

Either path is a sweep that deserves its own focused commit with proper
review. Mixing it into the scaffolding stream would muddy the diff and
make bisecting any real regression hard.

CHANGES

src/brainy.ts
- normalizeConfig() — left the runtime default at `false` for now (7.x
  behaviour preserved). Added a comment explaining that the 8.0 § C-1
  flip is staged as a separate focused commit.

The per-type rules (`brain.requireSubtype(type, options)`) and the
per-brain strict flag (`new Brainy({ requireSubtype: true })`) remain
fully functional — every consumer that wants the 8.0 contract today can
opt in explicitly. The flip is just about which default ships.

VERIFICATION

- npx tsc --noEmit: clean
- npm test: 1408 / 1409 (back to the pre-step-10 baseline; the parallel-test
  race condition outstanding from step 7 is unrelated)
2026-06-09 14:26:31 -07:00
694a31f499 refactor(8.0): drop strictConfig — surface too small to justify the option (scaffold step 9)
Per user direction: after the step-8 simplification reduced
`config.vector` to three knobs (`recall`, `quantization`, `persistMode`),
the `strictConfig` field's only remaining job was warning about
`quantization.bits` being silently ignored on the cortex DiskANN path —
one mismatch case across the entire public surface.

That's not enough surface to justify a declared-but-undelivered config
field. Cleaner to drop it now; if 8.x or 9.0 adds enough provider-knob
mismatch cases to warrant a general-purpose strictness flag, we can add
it back then.

CHANGES

src/types/brainy.types.ts
- Removed BrainyConfig.strictConfig field + its JSDoc block.
- Removed the `strictConfig: 'warn' flags this at init time` reference
  from quantization JSDoc; replaced with a plain "silently ignored on
  DiskANN" note (cortex's B.4 contract still applies).

src/brainy.ts
- normalizeConfig() no longer emits a strictConfig field.

NO-OP scope

Field was declared but had no enforcement logic. Removing it is a pure
type-surface change. No behaviour change.

VERIFICATION

- npx tsc --noEmit: clean
- npm test: 1408 / 1409 (same pre-existing race-condition outstanding)
2026-06-09 14:23:03 -07:00
8e767408d9 refactor(8.0): simplify config.vector to 3 knobs + fold persistMode (scaffold step 8)
Per user direction and BRAINY-8.0-RENAME-COORDINATION § G.2: the
`config.vector.advanced.{hnsw, diskann}` escape-hatch surface was
over-engineered. The 8.0 config surface collapses to **three knobs**:

```
config.vector = {
  recall?: 'fast' | 'balanced' | 'accurate'
  quantization?: { enabled?, bits?: 8 | 4 }
  persistMode?: 'immediate' | 'deferred'
}
```

The algorithm-internal HNSW knobs (`M`, `efConstruction`, `efSearch`,
`ml`) and DiskANN knobs (`pqM`, `searchListSize`, `alpha`, …) are no
longer exposed at the public surface. The `recall` preset covers the
legitimate quality/latency tradeoff; algorithm-internal tuning is
intentionally hidden. If users need it later, we can add it back —
shipping with too few knobs is easier to evolve than shipping with too
many.

CHANGES

src/types/brainy.types.ts
- BrainyConfig.hnswPersistMode (7.x top-level) → BrainyConfig.vector.persistMode.
- BrainyConfig.vector — dropped `advanced.{hnsw, diskann}` sub-block.
- BrainyConfig.vector.quantization — dropped `rerankMultiplier` (hardcoded to 3).
- BrainyConfig.vector — dropped `vectorStorage: 'memory' | 'lazy'`. Brainy
  always keeps vectors resident in 8.0; the lazy-eviction path was a
  cloud-storage optimisation that's no longer needed (cloud adapters are gone).
- JSDoc tightened to reflect the closed-form contract.

src/utils/recallPreset.ts
- resolveJsHnswConfig() signature narrowed: accepts `{ recall? }` only
  (no more `advanced` parameter).

src/brainy.ts
- normalizeConfig() — no longer carries `hnswPersistMode` on the resolved
  config. Dropped the deprecated 'gcs-native' warning, the gcsStorage
  HMAC-key warning, and the lenient storage-pairing block (dead code now
  that cloud adapters are gone).
- resolveHNSWPersistMode() — collapsed to a one-liner:
  `return this.config.vector?.persistMode ?? 'immediate'`. The cloud-vs-local
  smart-default branching is no longer relevant (filesystem is the only
  persistent backend in 8.0).
- setupIndex() — reads quantization fields from config.vector directly;
  rerankMultiplier hardcoded to 3.

NO-OP scope

The recall preset's 'balanced' = brainy 7.x DEFAULT_CONFIG byte-for-byte,
so users who don't set recall get the same behavior. Users who set
config.hnsw.* in 7.x will need to migrate to config.vector.* per the
8.0 release notes; pure 7.x defaults users see no change.

VERIFICATION

- npx tsc --noEmit: clean
- npm test: 1408 / 1409 (same pre-existing test-isolation race condition
  from step 7, not related to step 8)
2026-06-09 14:20:57 -07:00