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8 commits

Author SHA1 Message Date
0951fa1da0 feat(8.0): thread commit generation through the graph-write provider contract
Graph time-travel needs an edge's existence recorded per generation so
db.asOf(g) hops resolve historically correct endpoints. The metadata layer
already threads brainy's commit generation per write; the graph write path did
not, leaving a versioned verb-endpoint store unable to answer "which edges
existed at generation g".

- GraphIndexProvider.addVerb/removeVerb gain a `generation: bigint` parameter
  (the same watermark the storage layer stamps onto the record). A provider with
  a per-generation edge chain stamps the edge at that generation; the JS baseline
  has no such chain and accepts-and-ignores it — graph time-travel is a
  native-provider capability, and the open-core path serves edges as-of-now (the
  one documented graph time-travel limitation).
- The two graph transaction operations resolve the generation via a thunk at
  EXECUTE time: the generation store assigns the batch generation only once the
  commit begins executing, after the operations are planned. The same generation
  is reused for an operation's rollback half.
- All graph-write call sites pass the in-flight generation.

Adds a spy-provider test proving the threading, execute-time resolution, and
forward/rollback generation reuse. The JS index ignores the value, so behaviour
is unchanged: unit 1402/1402, db-mvcc 25/25, bigint-contract relate/unrelate 10/10.
2026-06-16 09:42:35 -07:00
1f7e365a4e chore(8.0): final pre-RC1 sweep — API consistency, named errors, orphans, zero-cast codebase 2026-06-11 14:51:00 -07:00
8f93add705 feat(8.0)!: delete fork/branch/commit/history/versions — superseded by the Db API
The COW version-control surface (fork, branches, checkout, commit,
getHistory/streamHistory, asOfCommit, brain.versions) is gone, along with
its subsystems: src/versioning/, the COW object store (CommitLog,
CommitObject, RefManager, TreeObject), HistoricalStorageAdapter, and the
TypeAwareHNSWIndex path it kept alive. The Db API (now/transact/asOf/
with/persist/restore) is the one versioning model in 8.0.

Survivors and replacements:
- BlobStorage survives (the VFS stores file content through it), relocated
  to src/storage/blobStorage.ts with binaryDataCodec.ts; its adapter
  interface is now BlobStoreAdapter, slimmed to the consumed surface
  (write/read/has/delete/getMetadata + MIME-aware compression policy).
- brain.migrate() backup branches are replaced by persist-before-migrate:
  MigrateOptions.backupTo persists a hard-link snapshot of the current
  generation before any transform runs; MigrationResult.backupPath reports
  it, and brain.restore(path) brings it back wholesale.
- CLI: cow.ts (fork/branch/checkout/history/migrate) is replaced by
  snapshot.ts — snapshot <path>, restore <path>, history (tx-log),
  generation.
- New public read API: brain.transactionLog({limit}) exposes the reified
  tx-log (generation/timestamp/meta, newest first) that backs the CLI
  history command; TxLogEntry is exported.

Tests: superseded suites deleted; fork/commit blocks excised from shared
suites; BlobStorage tests relocated + reworked against the slimmed store;
migration tests now prove the backupTo snapshot/restore round trip; new
transactionLog coverage in db-mvcc.
2026-06-10 15:22:47 -07:00
2427bb7960 feat(8.0): u64 BigInt graph provider contract — punch list a-d,g,h
GraphIndexProvider now speaks BigInt at the boundary (D.2 mirror):
- getNeighbors/getVerbIdsBySource/getVerbIdsByTarget take entity ints and
  return entity/verb ints as bigint[]
- new REQUIRED verbIntsToIds(bigint[]) batch reverse resolver (L.7
  identity-fingerprint design — verb ids are UUIDs by contract, so the
  provider-side interning is losslessly reversible)
- addVerb(verb, sourceInt, targetInt) returns the interned verb int;
  removeVerb(verbId) joins the contract

Coordinator (brainy.ts) owns ALL UUID <-> int conversion: getOrAssign on
writes, getInt on reads (unmapped UUID -> empty result without calling the
provider), getUuid / verbIntsToIds on returns, plus a bounded ~100k-entry
insertion-order warm cache for verb-int -> verb-id pairs fed by addVerb
returns and resolver results. GraphVerb gains derived sourceInt/targetInt
(populated at add time, never persisted). findConnectedSubtype gains a
native fast path that routes single-type single-subtype outgoing BFS
through the provider when available.

JS GraphAdjacencyIndex satisfies the contract while staying string/u32-keyed
internally: entity ints resolve through the shared entity-id mapper (threaded
in by the coordinator on init/fork/checkout), verb ints come from an
in-process append-only interning map re-derived from storage on
rebuild/cold-start. ColumnStoreProvider widens the same way: addEntity/
removeEntity take bigint, sortTopK/filteredSortTopK return bigint[].

relate() now rejects a caller-supplied id with a teaching error — verb ids
are brainy-generated UUIDs by contract in 8.0 (previously a passed id was
silently ignored). No Roaring64 provider-boundary decode site exists yet;
the JS-internal column store stays Roaring32 and the Treemap decoder lands
with the first consumer of provider-returned filter buffers.

Public brain API unchanged. 1413 tests green (+10 new BigInt contract tests).
2026-06-10 10:45:45 -07:00
f39d420cb4 refactor(8.0): rename HNSWIndex class → JsHnswVectorIndex (scaffold step 3)
Step 3 of the brainy 8.0 rename scaffolding. The class name now matches
its role: the JS HNSW implementation of the VectorIndexProvider contract.
Per planning § 2.3: this is NOT cosmetic — leaving HNSWIndex when the
public contract is VectorIndexProvider creates a confusing read at the
implementation layer.

CHANGES

Repo-wide mechanical rename: HNSWIndex → JsHnswVectorIndex across 52
references in src/ + 5 references in tests/ via sed. Class declaration,
imports, JSDoc, comments, and identifiers all updated.

src/index.ts
- Primary public export: JsHnswVectorIndex (the new name).
- Backwards-compat alias: `export const HNSWIndex = JsHnswVectorIndex`
  with @deprecated note. Removed in the final 8.0 cleanup commit.

NO-OP scope

No behavioural change. The class is exactly the same; only the name
moved. Tests + build green.

VERIFICATION

- npx tsc --noEmit: clean
- npm test: 1468 / 1468 unit
2026-06-09 13:07:56 -07:00
773c5171c3 fix: flush all native providers on shutdown to prevent data loss
Shutdown/close/flush now properly flushes all 4 components in parallel:
metadataIndex, graphIndex, HNSW dirty nodes, and storage counts. Previously
only counts were flushed, causing native provider data loss on restart.

Also:
- Wire roaring, msgpack, entityIdMapper provider consumption from plugins
- Fix allOf filter O(n²) intersection → O(n) Set-based
- Fix ne/exists negation filter to use Set-based exclusion
- Add setMsgpackImplementation() swap in SSTable for native msgpack
- Add setRoaringImplementation() swap for native CRoaring bitmaps
- Add getAllIntIds() to EntityIdMapper for bitmap operations
- Remove TypeAwareHNSWIndex from default index creation path
- Export memory detection utilities from internals
- Clean up 26 permanently-skipped dead tests
2026-02-01 16:23:49 -08:00
35cb674157 perf: optimize init() and rebuild performance
- Remove detectAndRepairCorruption from init() hot path — was loading all
  metadata chunks sequentially on startup. Now available via checkHealth()
  and repairIndex() methods.
- Short-circuit warmCache on empty workspace — skip 4-6 wasted storage reads.
- Parallelize MetadataIndex.init() and getGraphIndex() via Promise.all().
- Defer metadata writes during rebuild to batch boundaries (every 5000
  entities) instead of flushing per-entity.
- Skip pre-reads for new entities in transactions — saves 2 storage
  round-trips per add() on cloud storage.
2026-01-31 09:14:51 -08:00
e40fee39d8 feat: add v5.8.0 features - transactions, pagination, and comprehensive docs
**Transaction System (TIER 1.2)**
- Atomic operations with automatic rollback
- 36 unit tests + 35 integration tests passing
- Full documentation in docs/transactions.md

**Duplicate Check Optimization (TIER 1.4)**
- Optimized from O(n) to O(log n) using GraphAdjacencyIndex
- Uses LSM-tree for efficient lookups
- Tests verify performance improvements

**GraphIndex Pagination (TIER 1.5)**
- Production-scale pagination for high-degree nodes
- Backward compatible API
- 18 pagination tests passing

**Comprehensive Filter Documentation (TIER 1.6)**
- Complete operator reference (15 operators)
- Compound filters (anyOf, allOf, nested logic)
- Common query patterns and troubleshooting guide
- 642 lines of new documentation

**README Updates**
- Added Filter & Query Syntax Guide to Essential Reading
- Added Transactions to Core Concepts section

All changes tested and production-ready for v5.8.0 release.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-14 10:26:23 -08:00