chore: recovery checkpoint - v3.0 API successfully recovered

CRITICAL CHECKPOINT - DO NOT PUSH TO GITHUB

Recovery Status:
- Successfully recovered brainy.ts from compiled JavaScript
- All core v3.0 API methods functional (add, get, update, delete, relate, find, etc.)
- Neural subsystem intact (562KB embedded patterns, NLP working)
- Augmentation pipeline operational (20+ augmentations)
- HNSW clustering system complete
- Triple Intelligence compiled (needs constructor fix)
- Test suite validates functionality

Changes preserved:
- 898 files with changes from last 3 days
- 144,475 insertions
- All augmentation improvements
- All test coverage enhancements
- Complete v3.0 feature set

This is a LOCAL checkpoint only - contains recovered work after corruption incident.
Created backup in .backups/brainy-full-20250910-151314.tar.gz

Branch: recovery-checkpoint-20250910-151433
Date: Wed Sep 10 03:18:04 PM PDT 2025

tests/scripts/migrate-to-v3.sh

@@ -0,0 +1,54 @@
+#!/bin/bash
+
+# Script to migrate tests from old Brainy API to v3.0 API
+# This updates deprecated methods and types
+
+echo "🔄 Migrating tests to Brainy 3.0 API..."
+
+# List of test files to update
+TEST_FILES=(
+  "tests/integration/brainy-core.integration.test.ts"
+  "tests/integration/brainy-complete.integration.test.ts"
+)
+
+for file in "${TEST_FILES[@]}"; do
+  if [ -f "$file" ]; then
+    echo "📝 Updating $file..."
+    
+    # Backup original
+    cp "$file" "$file.backup"
+    
+    # Replace BrainyData with Brainy
+    sed -i 's/BrainyData/Brainy/g' "$file"
+    
+    # Replace addNoun with add (using proper params)
+    sed -i "s/brain\.addNoun(\([^,)]*\))/brain.add({ data: \1, type: 'thing' })/g" "$file"
+    sed -i "s/brain\.addNoun(\([^,]*\), \([^)]*\))/brain.add({ data: \1, type: 'thing', metadata: \2 })/g" "$file"
+    
+    # Replace addVerb with relate
+    sed -i "s/brain\.addVerb(\([^,]*\), \([^,]*\), \([^)]*\))/brain.relate({ from: \1, to: \2, type: \3 })/g" "$file"
+    
+    # Replace getNoun with get
+    sed -i 's/brain\.getNoun/brain.get/g' "$file"
+    
+    # Replace getVerb with getRelations
+    sed -i 's/brain\.getVerb/brain.getRelations/g' "$file"
+    
+    # Replace GraphNoun with Entity
+    sed -i 's/GraphNoun/Entity/g' "$file"
+    
+    # Replace GraphVerb with Relation
+    sed -i 's/GraphVerb/Relation/g' "$file"
+    
+    # Update import statements
+    sed -i "s/import { Brainy } from '..\/..\/dist\/index.js'/import { Brainy } from '..\/..\/src\/brainy'/g" "$file"
+    
+    # Fix forceMemoryStorage to new format
+    sed -i "s/storage: { forceMemoryStorage: true }/storage: { type: 'memory' }/g" "$file"
+    
+    echo "✅ Updated $file"
+  fi
+done
+
+echo "📊 Migration complete! Review the changes and run tests to verify."
+echo "💡 Backup files created with .backup extension"