chore: recovery checkpoint - v3.0 API successfully recovered

CRITICAL CHECKPOINT - DO NOT PUSH TO GITHUB

Recovery Status:
- Successfully recovered brainy.ts from compiled JavaScript
- All core v3.0 API methods functional (add, get, update, delete, relate, find, etc.)
- Neural subsystem intact (562KB embedded patterns, NLP working)
- Augmentation pipeline operational (20+ augmentations)
- HNSW clustering system complete
- Triple Intelligence compiled (needs constructor fix)
- Test suite validates functionality

Changes preserved:
- 898 files with changes from last 3 days
- 144,475 insertions
- All augmentation improvements
- All test coverage enhancements
- Complete v3.0 feature set

This is a LOCAL checkpoint only - contains recovered work after corruption incident.
Created backup in .backups/brainy-full-20250910-151314.tar.gz

Branch: recovery-checkpoint-20250910-151433
Date: Wed Sep 10 03:18:04 PM PDT 2025
This commit is contained in:
David Snelling 2025-09-10 15:18:04 -07:00
parent f65455fb22
commit 8ff382ca3b
895 changed files with 143654 additions and 28268 deletions

View file

@ -0,0 +1,219 @@
/**
* Periodic Cleanup for Soft-Deleted Items
*
* SAFETY-FIRST APPROACH:
* - Maintains durability guarantees (storage-first)
* - Coordinates HNSW and metadata index consistency
* - Isolated from live operations
* - Graceful failure handling
*/
import { prodLog } from './logger.js';
import { isDeleted } from './metadataNamespace.js';
/**
* Coordinates safe cleanup of old soft-deleted items across all indexes
*
* CRITICAL SAFETY FEATURES:
* 1. Storage-first deletion (durability)
* 2. Index consistency coordination
* 3. Batch processing with limits
* 4. Error isolation and recovery
*/
export class PeriodicCleanup {
constructor(storage, hnswIndex, metadataIndex, config = {}) {
this.cleanupTimer = null;
this.running = false;
this.storage = storage;
this.hnswIndex = hnswIndex;
this.metadataIndex = metadataIndex;
// Default: clean up items deleted more than 1 hour ago
this.config = {
maxAge: config.maxAge ?? 60 * 60 * 1000, // 1 hour
batchSize: config.batchSize ?? 100, // 100 items max per batch
cleanupInterval: config.cleanupInterval ?? 15 * 60 * 1000, // Every 15 minutes
enabled: config.enabled ?? true
};
this.stats = {
itemsProcessed: 0,
itemsDeleted: 0,
errors: 0,
lastRun: 0,
nextRun: 0
};
}
/**
* Start periodic cleanup
*/
start() {
if (!this.config.enabled || this.cleanupTimer) {
return;
}
prodLog.info(`Starting periodic cleanup: maxAge=${this.config.maxAge}, batchSize=${this.config.batchSize}, interval=${this.config.cleanupInterval}`);
this.scheduleNext();
}
/**
* Stop periodic cleanup
*/
stop() {
if (this.cleanupTimer) {
clearTimeout(this.cleanupTimer);
this.cleanupTimer = null;
}
prodLog.info('Stopped periodic cleanup');
}
/**
* Run cleanup manually
*/
async runNow() {
if (this.running) {
throw new Error('Cleanup already running');
}
return this.performCleanup();
}
/**
* Get current cleanup statistics
*/
getStats() {
return { ...this.stats };
}
scheduleNext() {
const nextRun = Date.now() + this.config.cleanupInterval;
this.stats.nextRun = nextRun;
this.cleanupTimer = setTimeout(async () => {
await this.performCleanup();
this.scheduleNext();
}, this.config.cleanupInterval);
}
/**
* CRITICAL: Coordinated cleanup across all indexes
*
* SAFETY PROTOCOL:
* 1. Find eligible items (old + soft-deleted)
* 2. Remove from storage FIRST (durability)
* 3. Remove from HNSW (graph consistency)
* 4. Remove from metadata index (search consistency)
* 5. Track stats and errors
*/
async performCleanup() {
if (this.running) {
prodLog.warn('Cleanup already running, skipping');
return this.stats;
}
this.running = true;
const startTime = Date.now();
this.stats.lastRun = startTime;
try {
prodLog.debug(`Starting cleanup run: maxAge=${this.config.maxAge}, cutoffTime=${startTime - this.config.maxAge}`);
// Step 1: Find eligible items for cleanup
const eligibleItems = await this.findEligibleItems(startTime);
if (eligibleItems.length === 0) {
prodLog.debug('No items eligible for cleanup');
return this.stats;
}
prodLog.info(`Found ${eligibleItems.length} items eligible for cleanup`);
// Step 2: Process in batches for safety
let processed = 0;
let deleted = 0;
let errors = 0;
for (let i = 0; i < eligibleItems.length; i += this.config.batchSize) {
const batch = eligibleItems.slice(i, i + this.config.batchSize);
const batchResult = await this.processBatch(batch);
processed += batchResult.processed;
deleted += batchResult.deleted;
errors += batchResult.errors;
// Small delay between batches to avoid overwhelming the system
if (i + this.config.batchSize < eligibleItems.length) {
await new Promise(resolve => setTimeout(resolve, 10));
}
}
// Update stats
this.stats.itemsProcessed += processed;
this.stats.itemsDeleted += deleted;
this.stats.errors += errors;
prodLog.info(`Cleanup run completed: processed=${processed}, deleted=${deleted}, errors=${errors}, duration=${Date.now() - startTime}ms`);
}
catch (error) {
prodLog.error(`Cleanup run failed: ${error}`);
this.stats.errors++;
}
finally {
this.running = false;
}
return this.stats;
}
/**
* Find items eligible for cleanup (old + soft-deleted)
*/
async findEligibleItems(currentTime) {
const cutoffTime = currentTime - this.config.maxAge;
const eligibleItems = [];
try {
// Get all nouns from storage (using pagination to avoid memory issues)
const nounsResult = await this.storage.getNouns({
pagination: { limit: 1000 } // Process in chunks
});
for (const noun of nounsResult.items) {
try {
if (!noun.metadata || !isDeleted(noun.metadata)) {
continue; // Not deleted, skip
}
// Check if old enough for cleanup
const deletedTime = noun.metadata._brainy?.updated || 0;
if (deletedTime && (currentTime - deletedTime) > this.config.maxAge) {
eligibleItems.push(noun.id);
}
}
catch (error) {
prodLog.warn(`Failed to check item ${noun.id} for cleanup eligibility: ${error}`);
}
}
}
catch (error) {
prodLog.error(`Failed to find eligible items: ${error}`);
throw error;
}
return eligibleItems;
}
/**
* Process a batch of items for cleanup
*
* CRITICAL: This maintains the durability-first approach:
* Storage HNSW Metadata Index
*/
async processBatch(itemIds) {
let processed = 0;
let deleted = 0;
let errors = 0;
for (const id of itemIds) {
processed++;
try {
// STEP 1: Remove from storage FIRST (durability guarantee)
try {
await this.storage.deleteNoun(id);
}
catch (storageError) {
prodLog.warn(`Failed to delete ${id} from storage: ${storageError}`);
errors++;
continue;
}
// STEP 2: Remove from HNSW index (vector search consistency)
const hnswResult = this.hnswIndex.removeItem(id);
if (!hnswResult) {
prodLog.warn(`Failed to remove ${id} from HNSW index (may not have been indexed)`);
// Not a critical error - item might not have been in vector index
}
// STEP 3: Remove from metadata index (faceted search consistency)
if (this.metadataIndex) {
await this.metadataIndex.removeFromIndex(id);
}
deleted++;
prodLog.debug(`Successfully cleaned up item ${id}`);
}
catch (error) {
errors++;
prodLog.error(`Failed to cleanup item ${id}: ${error}`);
}
}
return { processed, deleted, errors };
}
}
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