chore: recovery checkpoint - v3.0 API successfully recovered

CRITICAL CHECKPOINT - DO NOT PUSH TO GITHUB

Recovery Status:
- Successfully recovered brainy.ts from compiled JavaScript
- All core v3.0 API methods functional (add, get, update, delete, relate, find, etc.)
- Neural subsystem intact (562KB embedded patterns, NLP working)
- Augmentation pipeline operational (20+ augmentations)
- HNSW clustering system complete
- Triple Intelligence compiled (needs constructor fix)
- Test suite validates functionality

Changes preserved:
- 898 files with changes from last 3 days
- 144,475 insertions
- All augmentation improvements
- All test coverage enhancements
- Complete v3.0 feature set

This is a LOCAL checkpoint only - contains recovered work after corruption incident.
Created backup in .backups/brainy-full-20250910-151314.tar.gz

Branch: recovery-checkpoint-20250910-151433
Date: Wed Sep 10 03:18:04 PM PDT 2025

.recovery-workspace/dist-backup-20250910-141917/shared/default-augmentations.js

@@ -0,0 +1,112 @@
+/**
+ * Default Augmentation Registry
+ *
+ * 🧠⚛️ Pre-installed augmentations that come with every Brainy installation
+ * These are the core "sensory organs" of the atomic age brain-in-jar system
+ */
+/**
+ * Default augmentations that ship with Brainy
+ * These are automatically registered on startup
+ */
+export class DefaultAugmentationRegistry {
+    constructor(brainy) {
+        this.brainy = brainy;
+    }
+    /**
+     * Initialize all default augmentations
+     * Called during Brainy startup to register core functionality
+     */
+    async initializeDefaults() {
+        console.log('🧠⚛️ Initializing default augmentations...');
+        // Register Neural Import as default SENSE augmentation
+        await this.registerNeuralImport();
+        console.log('🧠⚛️ Default augmentations initialized');
+    }
+    /**
+     * Neural Import - Default SENSE Augmentation
+     * AI-powered data understanding and entity extraction (always free)
+     */
+    async registerNeuralImport() {
+        try {
+            // Import the Neural Import augmentation
+            const { NeuralImportAugmentation } = await import('../augmentations/neuralImport.js');
+            // Note: The actual registration is commented out since Brainy doesn't have addAugmentation method yet
+            // This would create instance with default configuration
+            /*
+            const neuralImport = new NeuralImportAugmentation(this.brainy as any, {
+              confidenceThreshold: 0.7,
+              enableWeights: true,
+              skipDuplicates: true
+            })
+      
+            // Add as SENSE augmentation to Brainy (when method is available)
+            if (this.brainy.addAugmentation) {
+              await this.brainy.addAugmentation('SENSE', cortex, {
+                position: 1, // First in the SENSE pipeline
+                name: 'cortex',
+                autoStart: true
+              })
+            }
+            */
+            console.log('🧠⚛️ Cortex module loaded (awaiting Brainy augmentation support)');
+        }
+        catch (error) {
+            console.error('❌ Failed to register Cortex:', error instanceof Error ? error.message : String(error));
+            // Don't throw - Brainy should still work without Neural Import
+        }
+    }
+    /**
+     * Check if Cortex is available and working
+     */
+    async checkCortexHealth() {
+        try {
+            // Check if Cortex is registered as an augmentation
+            // Note: hasAugmentation method doesn't exist yet in Brainy
+            const hasCortex = false; // this.brainy.hasAugmentation && this.brainy.hasAugmentation('SENSE', 'cortex')
+            return {
+                available: hasCortex || false,
+                status: hasCortex ? 'active' : 'not registered (awaiting Brainy support)',
+                version: '1.0.0'
+            };
+        }
+        catch (error) {
+            return {
+                available: false,
+                status: `Error: ${error instanceof Error ? error.message : String(error)}`
+            };
+        }
+    }
+    /**
+     * Reinstall Cortex if it's missing or corrupted
+     */
+    async reinstallCortex() {
+        try {
+            // Remove existing if present
+            // Note: removeAugmentation method doesn't exist yet in Brainy
+            /*
+            if (this.brainy.removeAugmentation) {
+              try {
+                await this.brainy.removeAugmentation('SENSE', 'cortex')
+              } catch (error) {
+                // Ignore errors if augmentation doesn't exist
+              }
+            }
+            */
+            // Re-register (method exists on base class)
+            // await this.registerCortex()
+            console.log('🧠⚛️ Cortex reinstalled successfully');
+        }
+        catch (error) {
+            throw new Error(`Failed to reinstall Cortex: ${error instanceof Error ? error.message : String(error)}`);
+        }
+    }
+}
+/**
+ * Helper function to initialize default augmentations for any Brainy instance
+ */
+export async function initializeDefaultAugmentations(brainy) {
+    const registry = new DefaultAugmentationRegistry(brainy);
+    await registry.initializeDefaults();
+    return registry;
+}
+//# sourceMappingURL=default-augmentations.js.map