chore: recovery checkpoint - v3.0 API successfully recovered

CRITICAL CHECKPOINT - DO NOT PUSH TO GITHUB

Recovery Status:
- Successfully recovered brainy.ts from compiled JavaScript
- All core v3.0 API methods functional (add, get, update, delete, relate, find, etc.)
- Neural subsystem intact (562KB embedded patterns, NLP working)
- Augmentation pipeline operational (20+ augmentations)
- HNSW clustering system complete
- Triple Intelligence compiled (needs constructor fix)
- Test suite validates functionality

Changes preserved:
- 898 files with changes from last 3 days
- 144,475 insertions
- All augmentation improvements
- All test coverage enhancements
- Complete v3.0 feature set

This is a LOCAL checkpoint only - contains recovered work after corruption incident.
Created backup in .backups/brainy-full-20250910-151314.tar.gz

Branch: recovery-checkpoint-20250910-151433
Date: Wed Sep 10 03:18:04 PM PDT 2025

.recovery-workspace/dist-backup-20250910-141917/cortex.d.ts

@@ -0,0 +1,11 @@
+/**
+ * Cortex - The Brain's Central Orchestration System
+ *
+ * 🧠⚛️ The cerebral cortex that coordinates all augmentations
+ *
+ * This is the main export for the Cortex system. It provides the central
+ * coordination for all augmentations, managing their registration, execution,
+ * and pipeline orchestration.
+ */
+export { Cortex, cortex, ExecutionMode, PipelineOptions, AugmentationPipeline, augmentationPipeline } from './augmentationPipeline.js';
+export type { BrainyAugmentations, IAugmentation, ISenseAugmentation, IConduitAugmentation, ICognitionAugmentation, IMemoryAugmentation, IPerceptionAugmentation, IDialogAugmentation, IActivationAugmentation, IWebSocketSupport, AugmentationResponse, AugmentationType } from './types/augmentations.js';