chore: recovery checkpoint - v3.0 API successfully recovered

CRITICAL CHECKPOINT - DO NOT PUSH TO GITHUB

Recovery Status:
- Successfully recovered brainy.ts from compiled JavaScript
- All core v3.0 API methods functional (add, get, update, delete, relate, find, etc.)
- Neural subsystem intact (562KB embedded patterns, NLP working)
- Augmentation pipeline operational (20+ augmentations)
- HNSW clustering system complete
- Triple Intelligence compiled (needs constructor fix)
- Test suite validates functionality

Changes preserved:
- 898 files with changes from last 3 days
- 144,475 insertions
- All augmentation improvements
- All test coverage enhancements
- Complete v3.0 feature set

This is a LOCAL checkpoint only - contains recovered work after corruption incident.
Created backup in .backups/brainy-full-20250910-151314.tar.gz

Branch: recovery-checkpoint-20250910-151433
Date: Wed Sep 10 03:18:04 PM PDT 2025

.recovery-workspace/dist-backup-20250910-141917/cli/commands/core.d.ts

@@ -0,0 +1,61 @@
+/**
+ * Core CLI Commands - TypeScript Implementation
+ *
+ * Essential database operations: add, search, get, relate, import, export
+ */
+interface CoreOptions {
+    verbose?: boolean;
+    json?: boolean;
+    pretty?: boolean;
+}
+interface AddOptions extends CoreOptions {
+    id?: string;
+    metadata?: string;
+    type?: string;
+}
+interface SearchOptions extends CoreOptions {
+    limit?: string;
+    threshold?: string;
+    metadata?: string;
+}
+interface GetOptions extends CoreOptions {
+    withConnections?: boolean;
+}
+interface RelateOptions extends CoreOptions {
+    weight?: string;
+    metadata?: string;
+}
+interface ImportOptions extends CoreOptions {
+    format?: 'json' | 'csv' | 'jsonl';
+    batchSize?: string;
+}
+interface ExportOptions extends CoreOptions {
+    format?: 'json' | 'csv' | 'jsonl';
+}
+export declare const coreCommands: {
+    /**
+     * Add data to the neural database
+     */
+    add(text: string, options: AddOptions): Promise<void>;
+    /**
+     * Search the neural database
+     */
+    search(query: string, options: SearchOptions): Promise<void>;
+    /**
+     * Get item by ID
+     */
+    get(id: string, options: GetOptions): Promise<void>;
+    /**
+     * Create relationship between items
+     */
+    relate(source: string, verb: string, target: string, options: RelateOptions): Promise<void>;
+    /**
+     * Import data from file
+     */
+    import(file: string, options: ImportOptions): Promise<void>;
+    /**
+     * Export database
+     */
+    export(file: string | undefined, options: ExportOptions): Promise<void>;
+};
+export {};