diff --git a/README.md b/README.md
index 7b8a62e0..126ae679 100644
--- a/README.md
+++ b/README.md
@@ -6,7 +6,7 @@
 [![Node.js](https://img.shields.io/badge/node-%3E%3D24.0.0-brightgreen.svg)](https://nodejs.org/)
 [![TypeScript](https://img.shields.io/badge/TypeScript-5.1.6-blue.svg)](https://www.typescriptlang.org/)
 [![PRs Welcome](https://img.shields.io/badge/PRs-welcome-brightgreen.svg)](CONTRIBUTING.md)
-[![npm](https://img.shields.io/badge/npm-v0.9.12-blue.svg)](https://www.npmjs.com/package/@soulcraft/brainy)
+[![npm](https://img.shields.io/badge/npm-v0.9.13-blue.svg)](https://www.npmjs.com/package/@soulcraft/brainy)
 
 [//]: # ([![Cartographer](https://img.shields.io/badge/Cartographer-Official%20Standard-brightgreen)](https://github.com/sodal-project/cartographer))
 
diff --git a/package.json b/package.json
index 3417f5fc..86670157 100644
--- a/package.json
+++ b/package.json
@@ -31,9 +31,10 @@
     "prebuild": "node scripts/generate-version.js",
     "build": "BUILD_TYPE=unified rollup -c rollup.config.js",
     "build:browser": "BUILD_TYPE=browser rollup -c rollup.config.js",
+    "build:cli": "BUILD_TYPE=cli rollup -c rollup.config.js",
     "start": "node dist/unified.js",
     "demo": "npm run build && npm run build:browser && npx http-server -o /index.html",
-    "cli": "node ./cli-wrapper.js",
+    "cli": "npm run build:cli && node ./cli-wrapper.js",
     "version": "node scripts/generate-version.js",
     "version:patch": "npm version patch",
     "version:minor": "npm version minor",
@@ -84,7 +85,9 @@
     "LICENSE",
     "README.md",
     "cli-wrapper.js",
-    "brainy.png"
+    "brainy.png",
+    "!dist/cli.js",
+    "!dist/cli.js.map"
   ],
   "devDependencies": {
     "@rollup/plugin-commonjs": "^25.0.7",
diff --git a/rollup.config.js b/rollup.config.js
index 66dcae81..b6250221 100644
--- a/rollup.config.js
+++ b/rollup.config.js
@@ -228,5 +228,6 @@ const cliConfig = {
   ]
 }
 
-// Export both configurations
-export default [mainConfig, cliConfig]
+// Export configurations based on build type
+// Only include CLI config when specifically building CLI
+export default buildType === 'cli' ? cliConfig : mainConfig
diff --git a/src/utils/version.ts b/src/utils/version.ts
index 3490dbea..d0858f28 100644
--- a/src/utils/version.ts
+++ b/src/utils/version.ts
@@ -3,4 +3,4 @@
  * Do not modify this file directly.
  */
 
-export const VERSION = '0.9.12';
+export const VERSION = '0.9.13';