refactor: remove deprecated Cortex class (replaced by brain.augmentations API)

src/augmentationManager.ts

@@ -4,7 +4,7 @@
  */
 
 import { IAugmentation, AugmentationType } from './types/augmentations.js'
-import { augmentationPipeline } from './augmentationPipeline.js'
+import { augmentationPipeline } from './pipeline.js'
 
 export interface AugmentationInfo {
   name: string

src/augmentationPipeline.ts

@@ -1,67 +0,0 @@
-/**
- * Augmentation Pipeline (Compatibility Layer)
- * 
- * @deprecated This file provides backward compatibility for code that imports
- * from augmentationPipeline. All new code should use AugmentationRegistry directly.
- * 
- * This minimal implementation redirects to the new AugmentationRegistry system.
- */
-
-import { BrainyAugmentation } from './types/augmentations.js'
-
-/**
- * Execution mode for pipeline operations
- */
-export enum ExecutionMode {
-  SEQUENTIAL = 'sequential',
-  PARALLEL = 'parallel',
-  FIRST_SUCCESS = 'firstSuccess',
-  FIRST_RESULT = 'firstResult',
-  THREADED = 'threaded'
-}
-
-/**
- * Options for pipeline execution
- */
-export interface PipelineOptions {
-  mode?: ExecutionMode
-  timeout?: number
-  retries?: number
-  throwOnError?: boolean
-}
-
-/**
- * Minimal Cortex class for backward compatibility
- * Redirects all operations to the new AugmentationRegistry system
- */
-export class Cortex {
-  private static instance?: Cortex
-
-  constructor() {
-    if (Cortex.instance) {
-      return Cortex.instance
-    }
-    Cortex.instance = this
-  }
-
-  // Deprecated methods have been removed.
-  // Use brain.augmentations API instead for all augmentation operations.
-
-  // Additional deprecated methods removed.
-  // All augmentation management should use brain.augmentations API.
-
-  // All remaining deprecated methods removed.
-
-  // Final deprecated methods removed.
-  // This class now serves as a minimal compatibility layer.
-}
-
-// Create and export a default instance of the cortex
-export const cortex = new Cortex()
-
-// Backward compatibility exports
-export const AugmentationPipeline = Cortex
-export const augmentationPipeline = cortex
-
-// Export types for compatibility (avoid duplicate export)
-// PipelineOptions already exported above

src/cortex.ts

@@ -1,36 +0,0 @@
-/**
- * Cortex - The Brain's Central Orchestration System
- * 
- * 🧠⚛️ The cerebral cortex that coordinates all augmentations
- * 
- * This is the main export for the Cortex system. It provides the central
- * coordination for all augmentations, managing their registration, execution,
- * and pipeline orchestration.
- */
-
-// Re-export from augmentationPipeline (which contains the Cortex class)
-export { 
-  Cortex,
-  cortex,
-  ExecutionMode,
-  PipelineOptions,
-  // Backward compatibility
-  AugmentationPipeline,
-  augmentationPipeline
-} from './augmentationPipeline.js'
-
-// Re-export augmentation types for convenience
-export type {
-  BrainyAugmentations,
-  IAugmentation,
-  ISenseAugmentation,
-  IConduitAugmentation,
-  ICognitionAugmentation,
-  IMemoryAugmentation,
-  IPerceptionAugmentation,
-  IDialogAugmentation,
-  IActivationAugmentation,
-  IWebSocketSupport,
-  AugmentationResponse,
-  AugmentationType
-} from './types/augmentations.js'

src/index.ts

@@ -54,11 +54,20 @@ export {
   getPresetDescription
 } from './config/index.js'
 
-// Export Cortex (the orchestrator)
-export { 
-  Cortex, 
-  cortex
-} from './cortex.js'
+// Export augmentation types
+export type {
+  BrainyAugmentations,
+  IAugmentation,
+  ISenseAugmentation,
+  IConduitAugmentation,
+  ICognitionAugmentation,
+  IMemoryAugmentation,
+  IPerceptionAugmentation,
+  IDialogAugmentation,
+  IActivationAugmentation,
+  IWebSocketSupport,
+  AugmentationType
+} from './types/augmentations.js'
 
 // Export Neural Import (AI data understanding)
 export { NeuralImport } from './cortex/neuralImport.js'

src/mcp/mcpAugmentationToolset.ts

@@ -15,7 +15,7 @@ import {
 import { AugmentationType } from '../types/augmentations.js'
 
 // Import the augmentation pipeline
-import { augmentationPipeline } from '../augmentationPipeline.js'
+import { augmentationPipeline } from '../pipeline.js'
 
 export class MCPAugmentationToolset {
   /**

src/pipeline.ts

@@ -1,36 +1,59 @@
 /**
- * Pipeline - Clean Re-export of Cortex
+ * Pipeline - Augmentation execution pipeline
  *
- * After the Great Cleanup: Pipeline IS Cortex. No delegation, no complexity.
- * ONE way to do everything.
+ * Provides Pipeline class, execution modes, and factory functions.
+ * All augmentation management should use brain.augmentations API.
  */
 
-// Export the ONE consolidated Cortex class as Pipeline for those who prefer the name
-export { 
-  Cortex as Pipeline,
-  cortex as pipeline,
-  ExecutionMode,
-  PipelineOptions
-} from './augmentationPipeline.js'
-
-// Re-export for backward compatibility in imports
-export { 
-  cortex as augmentationPipeline,
-  Cortex
-} from './augmentationPipeline.js'
-
-// Simple factory functions
-export const createPipeline = async () => {
-  const { Cortex } = await import('./augmentationPipeline.js')
-  return new Cortex()
-}
-export const createStreamingPipeline = async () => {
-  const { Cortex } = await import('./augmentationPipeline.js')
-  return new Cortex()
+/**
+ * Execution mode for pipeline operations
+ */
+export enum ExecutionMode {
+  SEQUENTIAL = 'sequential',
+  PARALLEL = 'parallel',
+  FIRST_SUCCESS = 'firstSuccess',
+  FIRST_RESULT = 'firstResult',
+  THREADED = 'threaded'
 }
 
-// Type aliases for consistency
-export type { PipelineOptions as StreamlinedPipelineOptions } from './augmentationPipeline.js'
+/**
+ * Options for pipeline execution
+ */
+export interface PipelineOptions {
+  mode?: ExecutionMode
+  timeout?: number
+  retries?: number
+  throwOnError?: boolean
+}
+
+/**
+ * Minimal Pipeline class for backward compatibility.
+ * All augmentation management should use brain.augmentations API.
+ */
+export class Pipeline {
+  private static instance?: Pipeline
+
+  constructor() {
+    if (Pipeline.instance) {
+      return Pipeline.instance
+    }
+    Pipeline.instance = this
+  }
+}
+
+// Default singleton instance
+export const pipeline = new Pipeline()
+
+// Backward compatibility aliases
+export const AugmentationPipeline = Pipeline
+export const augmentationPipeline = pipeline
+
+// Factory functions
+export const createPipeline = async () => new Pipeline()
+export const createStreamingPipeline = async () => new Pipeline()
+
+// Type aliases
+export type StreamlinedPipelineOptions = PipelineOptions
 export type PipelineResult<T> = { success: boolean; data: T; error?: string }
 export type StreamlinedPipelineResult<T> = PipelineResult<T>