fix(storage): CRITICAL - preserve vectors when updating HNSW connections (v4.7.3)

CRITICAL DATA CORRUPTION FIX affecting ALL storage adapters

## Root Cause
When HNSW index updated node connections (adding new neighbors), saveHNSWData()
overwrote the entire node file with ONLY {level, connections}, destroying vector data.

## Impact
- v4.7.2: Broke ALL imports - relate() crashed with "Cannot read properties of undefined"
- Affected ALL storage adapters: FileSystem, GCS, Azure, R2, OPFS, S3Compatible
- VFS imports completely non-functional
- Any multi-entity operation would corrupt existing entity vectors

## The Bug
```typescript
// OLD CODE (v4.7.2) - DESTROYED VECTORS:
async saveHNSWData(id, hnswData) {
  await writeFile(path, JSON.stringify(hnswData))  // Only {level, connections}!
}
```

When entity2 was added to HNSW:
1. HNSW found entity1 as neighbor
2. Updated entity1's connections
3. Called saveHNSWData(entity1.id, {level, connections})
4. Overwrote entity1.json with ONLY {level, connections}
5. **entity1.vector and entity1.id were DESTROYED**

## The Fix
```typescript
// NEW CODE (v4.7.3) - PRESERVES ALL DATA:
async saveHNSWData(id, hnswData) {
  const existing = await readFile(path)
  const updated = {...existing, level: hnswData.level, connections: hnswData.connections}
  await writeFile(path, JSON.stringify(updated))  // Preserves id, vector, etc.
}
```

Now READ existing node, UPDATE only HNSW fields, WRITE complete node.

## Files Changed
- src/storage/adapters/fileSystemStorage.ts (line 2590-2626)
- src/storage/adapters/gcsStorage.ts (line 1863-1911)
- src/storage/adapters/azureBlobStorage.ts (line 1638-1682)
- src/storage/adapters/r2Storage.ts (line 999-1029)
- src/storage/adapters/opfsStorage.ts (line 2012-2051)
- src/storage/adapters/s3CompatibleStorage.ts (line 3903-3961)

## Testing
✅ FileSystemStorage: Verified with test-relate-crash.js
✅ All adapters: Compilation successful
✅ Imports: VFS directory creation and relate() working

## Breaking Changes
NONE - This is a critical bug fix

## Migration
Workshop team: Delete brainy-data and reimport with v4.7.3

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

src/storage/adapters/fileSystemStorage.ts

@@ -2579,13 +2579,36 @@ export class FileSystemStorage extends BaseStorage {
   }): Promise<void> {
     await this.ensureInitialized()
 
-    // Use sharded path for HNSW data
-    const shard = nounId.substring(0, 2).toLowerCase()
-    const hnswDir = path.join(this.rootDir, 'entities', 'nouns', 'hnsw', shard)
-    await this.ensureDirectoryExists(hnswDir)
+    // CRITICAL FIX (v4.7.3): Must preserve existing node data (id, vector) when updating HNSW metadata
+    // Previous implementation overwrote the entire file, destroying vector data
+    // Now we READ the existing node, UPDATE only connections/level, then WRITE back the complete node
 
-    const filePath = path.join(hnswDir, `${nounId}.json`)
-    await fs.promises.writeFile(filePath, JSON.stringify(hnswData, null, 2))
+    const filePath = this.getNodePath(nounId)
+
+    try {
+      // Read existing node data
+      const existingData = await fs.promises.readFile(filePath, 'utf-8')
+      const existingNode = JSON.parse(existingData)
+
+      // Preserve id and vector, update only HNSW graph metadata
+      const updatedNode = {
+        ...existingNode,  // Preserve all existing fields (id, vector, etc.)
+        level: hnswData.level,
+        connections: hnswData.connections
+      }
+
+      // Write back the COMPLETE node with updated HNSW data
+      await fs.promises.writeFile(filePath, JSON.stringify(updatedNode, null, 2))
+    } catch (error: any) {
+      // If node doesn't exist yet, create it with just HNSW data
+      // This should only happen during initial node creation
+      if (error.code === 'ENOENT') {
+        await this.ensureDirectoryExists(path.dirname(filePath))
+        await fs.promises.writeFile(filePath, JSON.stringify(hnswData, null, 2))
+      } else {
+        throw error
+      }
+    }
   }
 
   /**